NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|53686577|ref|YP_097080|]
View 

ATP synthase F0 subunit 8 (mitochondrion) [Rhyacotriton variegatus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ATP8 super family cl03008
ATP synthase F0 subunit 8; Provisional
 1-53 3.82e-11

ATP synthase F0 subunit 8; Provisional


The actual alignment was detected with superfamily member MTH00133:

Pssm-ID: 470718  Cd Length: 55  Bit Score: 51.41  E-value: 3.82e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 53686577   1 MPQLNPNPWLTIFMVAWLMYLFLLMFK-MNLKMTNELMLQNINKFNNKSWYWPW 53
Cdd:MTH00133  1 MPQLNPAPWFAILVFSWLVFLTIIPPKvLAHTFPNEPTPQSTEKPKTEPWNWPW 54
 
Name Accession Description Interval E-value
ATP8 MTH00133
ATP synthase F0 subunit 8; Provisional
 1-53 3.82e-11

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 177191  Cd Length: 55  Bit Score: 51.41  E-value: 3.82e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 53686577   1 MPQLNPNPWLTIFMVAWLMYLFLLMFK-MNLKMTNELMLQNINKFNNKSWYWPW 53
Cdd:MTH00133  1 MPQLNPAPWFAILVFSWLVFLTIIPPKvLAHTFPNEPTPQSTEKPKTEPWNWPW 54
ATP-synt_8 pfam00895
ATP synthase protein 8;
1-53 2.78e-03

ATP synthase protein 8;


Pssm-ID: 459986  Cd Length: 54  Bit Score: 31.54  E-value: 2.78e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 53686577    1 MPQLNPNPWLTIFMVAWLMYLFLLMFKMNLKMTNELML-QNINKFNNKSWYWPW 53
Cdd:pfam00895  1 MPQLNTSTWFTTILLMWLTLFILFQLKLSSHTPTNPPPkSLKTTKHPNPWEWKW 54
 
Name Accession Description Interval E-value
ATP8 MTH00133
ATP synthase F0 subunit 8; Provisional
 1-53 3.82e-11

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 177191  Cd Length: 55  Bit Score: 51.41  E-value: 3.82e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 53686577   1 MPQLNPNPWLTIFMVAWLMYLFLLMFK-MNLKMTNELMLQNINKFNNKSWYWPW 53
Cdd:MTH00133  1 MPQLNPAPWFAILVFSWLVFLTIIPPKvLAHTFPNEPTPQSTEKPKTEPWNWPW 54
ATP8 MTH00072
ATP synthase F0 subunit 8; Provisional
 1-54 1.99e-09

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 164642  Cd Length: 54  Bit Score: 47.28  E-value: 1.99e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 53686577   1 MPQLNPNPWLTIFMVAWLMYLFLLMFK-MNLKMTNELMLQNiNKFNNKSWYWPWT 54
Cdd:MTH00072  1 MPQLNPGPWFAIFLMSWLIFLLILPFKiSNHKNLNEPTSQN-KKNKPESWNWPWT 54
ATP8 MTH00123
ATP synthase F0 subunit 8; Provisional
 1-54 4.87e-08

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 214426  Cd Length: 54  Bit Score: 43.72  E-value: 4.87e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 53686577   1 MPQLNPNPWLTIFMVAWLMYLFLLMFKMNLKMTNELMLQNINKFNNKSWYWPWT 54
Cdd:MTH00123  1 MPQLNPAPWFLIMLLTWLTLILIIQPKILSFTPTNNPTKTNTTTNTTPWTWPWT 54
ATP8 MTH00171
ATP synthase F0 subunit 8; Provisional
 1-53 1.69e-07

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 177225  Cd Length: 54  Bit Score: 42.35  E-value: 1.69e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 53686577   1 MPQLNPNPWLTIFMVAWLMYLFLLMFK-MNLKMTNELMLQNINKFNNKSWYWPW 53
Cdd:MTH00171  1 MPQLNPIPWFFIFLFSWLIFLTLLPNKiTKHIFTNKPSPNQTEKPKPNEWNWPW 54
ATP-synt_8 pfam00895
ATP synthase protein 8;
1-53 2.78e-03

ATP synthase protein 8;


Pssm-ID: 459986  Cd Length: 54  Bit Score: 31.54  E-value: 2.78e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 53686577    1 MPQLNPNPWLTIFMVAWLMYLFLLMFKMNLKMTNELML-QNINKFNNKSWYWPW 53
Cdd:pfam00895  1 MPQLNTSTWFTTILLMWLTLFILFQLKLSSHTPTNPPPkSLKTTKHPNPWEWKW 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH