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Conserved domains on  [gi|2459375792|ref|YP_010715735|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Hermya beelzebul]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-172 5.10e-41

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 135.32  E-value: 5.10e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792   3 QFILMMTMIIFNFMFMNMKHPLAMGLMLLIQTTLVSMMSGLINKSFWFSYMLFLVFLGGMLVLFIYVTSLASNEMFSFSI 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792  83 KLMLISYIFMMISIFILFMLDKNYLIQYKNlemksifnlesYIMENSLSLNKLYNFPTNFLTILLMIYLLITLIAVVKIT 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNF-----------NFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|
gi 2459375792 163 KFFKGPLRSM 172
Cdd:MTH00166  150 NIFKGPLRSK 159
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-172 5.10e-41

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 135.32  E-value: 5.10e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792   3 QFILMMTMIIFNFMFMNMKHPLAMGLMLLIQTTLVSMMSGLINKSFWFSYMLFLVFLGGMLVLFIYVTSLASNEMFSFSI 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792  83 KLMLISYIFMMISIFILFMLDKNYLIQYKNlemksifnlesYIMENSLSLNKLYNFPTNFLTILLMIYLLITLIAVVKIT 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNF-----------NFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|
gi 2459375792 163 KFFKGPLRSM 172
Cdd:MTH00166  150 NIFKGPLRSK 159
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-172 5.10e-41

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 135.32  E-value: 5.10e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792   3 QFILMMTMIIFNFMFMNMKHPLAMGLMLLIQTTLVSMMSGLINKSFWFSYMLFLVFLGGMLVLFIYVTSLASNEMFSFSI 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792  83 KLMLISYIFMMISIFILFMLDKNYLIQYKNlemksifnlesYIMENSLSLNKLYNFPTNFLTILLMIYLLITLIAVVKIT 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNF-----------NFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|
gi 2459375792 163 KFFKGPLRSM 172
Cdd:MTH00166  150 NIFKGPLRSK 159
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 6.74e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 67.99  E-value: 6.74e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792   1 MIQFILMMTMIIFNFMFMNMKHPLAMGLMLLIQTTLVSMMSGLINkSFWFSYMLFLVFLGGMLVLFIYVTSLASNEMFSF 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792  81 SIKLMlisYIFMMISIFILFMLDKNYLIQYKNLEMKSIFNLESYIMENSLSLNKLYNFptnFLTILLMIYLLITLIAVVK 160
Cdd:MTH00152   80 NFKFV---FFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGW---SIFVFLAVLLLIVMVSVVK 153

                         170
                  ....*....|
gi 2459375792 161 ITKFFKGPLR 170
Cdd:MTH00152  154 ICYYEEGSLR 163
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-170 1.35e-12

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 61.95  E-value: 1.35e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792   1 MIQFILMMTMIIFNFMFMNMKHPLAMGLMLLIQTTLVSMMSGLINkSFWFSYMLFLVFLGGMLVLFIYVTSLASNEMFSF 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMES-NSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459375792  81 SIKLMLISYIFMMISIFILFMLDKNYLIQYKNlemksifnlesyIMENSLSLNKLYNFPTNFLTILLMIYLLITLIAVVK 160
Cdd:MTH00212   80 KKYFKGFGMILISLNLYLLLMTLGSSNFSPML------------NLKLELNVSKILSNNNIPILLFLGLILLIALLMVVK 147

                         170
                  ....*....|
gi 2459375792 161 ITKFFKGPLR 170
Cdd:MTH00212  148 ICQYYKGPLR 157
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 51-100 5.87e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 35.59  E-value: 5.87e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2459375792  51 SYMLFLVFLGGMLVLFIYVTSLASnEMF-----SFSIKLMLISYIFMMISIFILF 100
Cdd:MTH00065   52 SLVLFLIYLGGMLVVFAYSAALAA-EPYpeawgSWSVLVYVLFYLLLLIVGYILF 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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