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Conserved domains on  [gi|2431514022|ref|YP_010614916|]
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hypothetical chloroplast RF19 (chloroplast) [Barleria lupulina]

Protein Classification

TIC214/Ycf1 family protein( domain architecture ID 11414143)

TIC214/ycf1 family protein is a component of the chloroplast inner membrane protein translocon and forms a 1-MD complex together with Tic100, Tic56, and Tic20-I

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1797 0e+00

Ycf1; Provisional


:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2474.55  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022    8 LGNLVSLCMKIINSVVVVGLYYGFLTTLSIGPSYLFLLRAEVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022   85 GRPHTITVLALPYLLFHFFWNNHKHFLNYGPATRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMLARLVNISMFRCNNKM 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  165 LFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKYLVSELRNSMAQIFSILLFITCVYYFGRIPSPILTK 244
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  245 KLKETSKTEEM----------------------------EEDP-PSF--PKNIDPKKIDEREpvskesylinlnENHDNS 293
Cdd:CHL00204   241 KLKETSETEERveseeetdveietasetkgtkqeqegstEEDPsPSLfsEEREDPDKIDETE------------EIRVNG 308

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  294 RLKIfdkkfeDKDPFRFDKPLVTLLFDSKRWNRPFRYIKNNKFDKAVRNEMSQYFFYICQSDGNERISFTYPPSLSTFLE 373
Cdd:CHL00204   309 KEKI------KKDLFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWE 382

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  374 IIKRKISSPILEKSSSNELYNPWVFTNKQKGKNLNKEFLNRIEALDKESISLNIFETRTQLCNDDSTKEYLSKRYDPFLN 453
Cdd:CHL00204   383 MIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLN 462

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  454 GSYRRRIYKSVSPSILKK---QNFPEKFGINRIHVILLPDTDS---DRKTNGFSKKSVSREIVDFFTFSIQFVREPGSiN 527
Cdd:CHL00204   463 GPYRGRIKKLFSPSIINEtsiKNNIEGVWINKIHGILLNNTDYqefEQKIDTFNKKSLSTEINESLTLINKFGAEPKS-S 541

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  528 LTRRSPSLFSE----------GRRYFQYLLTKIVTDPNV-----KAIRIKEISKKVPRWSYNLITELEQQSGEHEEDVPI 592
Cdd:CHL00204   542 LNLKGLSLFSEpeqekinseeEIKIFKFLFDAVITDPNDqtiikKSIGIKEISKKVPRWSYKLIDELEQLEGENEENVPS 621

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  593 DHQIRSRKAKRVVIFTTNKEDTDPNTTDTNTTDQ--TNEVALIRYSQQPDFRRGLIKGSMRAQRRKIVIGELSQANVHSP 670
Cdd:CHL00204   622 DHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSdqKDEVALIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQANVHSP 701

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  671 LFLDRIEKSPLFSFDIFGLIKPIFRNWVGKEEAFKILKYIEEQTKRKEKN-----EKKIKKEKAQTEIAESWDTIPFAQV 745
Cdd:CHL00204   702 LFLDRIDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKekkkeEEYKREEKARIEIAEAWDSILFAQV 781

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  746 IRGCMLLTQSIFRKYILLPSLIISKNIGRILLLQFPEWSEDFKEWNREIHVKCTYNGVPLSETEFPQNWLTDGIQIKIFF 825
Cdd:CHL00204   782 IRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKILF 861

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  826 PFCLKPWHKSKQESSPKDLMKKKKEK-NDFSFLTILGMEAELPFGSPRKRPSFFKPILKEFEKKIGKLKKKSFRVffraL 904
Cdd:CHL00204   862 PFYLKPWHRSKLRSSHKDRMKKKKKKkNDFCFLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIRKFKKKYFLV----L 937

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  905 IVFKGKTKLFRKTLKETKEWVIKSVIFLKRIIKEffkFLKGNLIRLFRLRevEIYESSEIREEKDSRINKKIIDESSSQI 984
Cdd:CHL00204   938 KILKERTKLFLKVSKETKKWIIKSFLFLKRIIKE---LSKRNPILLFGLR--EIYELNETKKEKDSIISNQMIHESSVQI 1012

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  985 VSPSWKNSLLTEKKMKDRTHRTSTLRDQIERITKEKEKVTPRMnNLSPNKTSSSAKRFE----KWKILKRSNARFISKSP 1060
Cdd:CHL00204  1013 RSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITNTI-NISPNKTSYDSKIIEsskkIWQILKRRNTRLIRKSY 1091

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1061 LFGKFFIERIYTDLFLSIINIARINTEFFVESTKKIRDKSIFNNERKQGR---KKKNTIPFISTIKKPLDNIS--KRNSH 1135
Cdd:CHL00204  1092 YFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKEKinkKKQNTIHFISTIKKSLYNISnkNKNSK 1171

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1136 SFYDLSYVSQAYVLYRFSELQVNESSKLRSVLQYQGIPFFLKPEIKHSFERQGVLDSKLKDKQLPSYEMNQWKNWLRRHY 1215
Cdd:CHL00204  1172 IFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYFEAQGIFHSKLKHKNLLNSGMNQWKNWLRSHY 1251

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1216 QYDLSQIIWSRLIPEKWRNTVHHHRIAKAKkeNVSKQHSYEKNQFINSKKQKelkvDLKVDLKINQKENFSKYYRYDLLS 1295
Cdd:CHL00204  1252 QYDLSQIRWSRLVPQKWRNRVNQDRMVQNK--DLNKWDSYEKDRLIHYKKQN----DFEANSLLNQKDNFKKDYRYDLLS 1325

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1296 SKFLNYENKTecffygslFEGNKNQEIY--YNTPKRTFFDPLKNILITNYLGKVHslYIDMEKTADRKYLDWKILNFDLR 1373
Cdd:CHL00204  1326 YKSINYEDKK--------FQVNKNQEISynYNTRKVNLFDMPEGIAINNYLGKGD--ILDIEKNPDRKYLDWRILNFSLR 1395

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1374 QKADIQAWMTMDINRNQNTQIHPNNSQLIHKKDlfyLMIPEINSSKSPKGFLDWMGMNEKMLKRP--NLELWFFSELVSI 1451
Cdd:CHL00204  1396 KKVDIESWVDTDSKSKKNTKTGVNNYQIIDKID---HQDFENNQANKKKNFFDWMGMNEEILNRPisNLEFWFFPEFVLL 1472

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1452 YTAYKMKPWFIPSKFLFLNLNRNQksseKKKLNKKEKRNFLIASNK------EHPNQEERELTSRGDLGS---------- 1515
Cdd:CHL00204  1473 YNTYKIKPWIIPIKLLLLNLNGNE----NVNKKINQKKKGFIPSNEkksieiENRNQEEKEPAGQGELESdkekkgnles 1548

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1516 -ILPQQKDIDENSTRSDTKKEKKKQYK-SDTEAKLDFFLKRYLLFQLKWDDTLNQRMINNIKVYCLLLRLIDPRKITISS 1593
Cdd:CHL00204  1549 vLSNQEKNIEEDYAESDIKKRKNKKQYkSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINPREIAISS 1628

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1594 IQKREMSLDIMLIRDNFTPTELMKKGILIIEPIRLSGKKDGQFIMYQTVGISLVHKSKHQANKKYQEKRYLSKKKLDEAI 1673
Cdd:CHL00204  1629 IQRGEMSLDIMMIQKNLTLTELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFDESI 1708

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1674 SPHQRITGKRKKNHFDLLVPENILSFRRGRKLRILISFNSKNRNDVDRNPVFCNEKNVKNISQVSHDNNYLDRDQKKLMK 1753
Cdd:CHL00204  1709 TKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNSKNKNAVDRNSVFCNEKNVKNCGQVLDKKKDLDKDKNKLIK 1788

                         1850      1860      1870      1880
                   ....*....|....*....|....*....|....*....|....
gi 2431514022 1754 LKLFLWPNYRLEDLACLSRYWFDTNNGSRFSMLRIHLYPQLKIR 1797
Cdd:CHL00204  1789 LKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1797 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2474.55  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022    8 LGNLVSLCMKIINSVVVVGLYYGFLTTLSIGPSYLFLLRAEVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022   85 GRPHTITVLALPYLLFHFFWNNHKHFLNYGPATRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMLARLVNISMFRCNNKM 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  165 LFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKYLVSELRNSMAQIFSILLFITCVYYFGRIPSPILTK 244
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  245 KLKETSKTEEM----------------------------EEDP-PSF--PKNIDPKKIDEREpvskesylinlnENHDNS 293
Cdd:CHL00204   241 KLKETSETEERveseeetdveietasetkgtkqeqegstEEDPsPSLfsEEREDPDKIDETE------------EIRVNG 308

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  294 RLKIfdkkfeDKDPFRFDKPLVTLLFDSKRWNRPFRYIKNNKFDKAVRNEMSQYFFYICQSDGNERISFTYPPSLSTFLE 373
Cdd:CHL00204   309 KEKI------KKDLFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWE 382

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  374 IIKRKISSPILEKSSSNELYNPWVFTNKQKGKNLNKEFLNRIEALDKESISLNIFETRTQLCNDDSTKEYLSKRYDPFLN 453
Cdd:CHL00204   383 MIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLN 462

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  454 GSYRRRIYKSVSPSILKK---QNFPEKFGINRIHVILLPDTDS---DRKTNGFSKKSVSREIVDFFTFSIQFVREPGSiN 527
Cdd:CHL00204   463 GPYRGRIKKLFSPSIINEtsiKNNIEGVWINKIHGILLNNTDYqefEQKIDTFNKKSLSTEINESLTLINKFGAEPKS-S 541

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  528 LTRRSPSLFSE----------GRRYFQYLLTKIVTDPNV-----KAIRIKEISKKVPRWSYNLITELEQQSGEHEEDVPI 592
Cdd:CHL00204   542 LNLKGLSLFSEpeqekinseeEIKIFKFLFDAVITDPNDqtiikKSIGIKEISKKVPRWSYKLIDELEQLEGENEENVPS 621

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  593 DHQIRSRKAKRVVIFTTNKEDTDPNTTDTNTTDQ--TNEVALIRYSQQPDFRRGLIKGSMRAQRRKIVIGELSQANVHSP 670
Cdd:CHL00204   622 DHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSdqKDEVALIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQANVHSP 701

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  671 LFLDRIEKSPLFSFDIFGLIKPIFRNWVGKEEAFKILKYIEEQTKRKEKN-----EKKIKKEKAQTEIAESWDTIPFAQV 745
Cdd:CHL00204   702 LFLDRIDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKekkkeEEYKREEKARIEIAEAWDSILFAQV 781

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  746 IRGCMLLTQSIFRKYILLPSLIISKNIGRILLLQFPEWSEDFKEWNREIHVKCTYNGVPLSETEFPQNWLTDGIQIKIFF 825
Cdd:CHL00204   782 IRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKILF 861

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  826 PFCLKPWHKSKQESSPKDLMKKKKEK-NDFSFLTILGMEAELPFGSPRKRPSFFKPILKEFEKKIGKLKKKSFRVffraL 904
Cdd:CHL00204   862 PFYLKPWHRSKLRSSHKDRMKKKKKKkNDFCFLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIRKFKKKYFLV----L 937

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  905 IVFKGKTKLFRKTLKETKEWVIKSVIFLKRIIKEffkFLKGNLIRLFRLRevEIYESSEIREEKDSRINKKIIDESSSQI 984
Cdd:CHL00204   938 KILKERTKLFLKVSKETKKWIIKSFLFLKRIIKE---LSKRNPILLFGLR--EIYELNETKKEKDSIISNQMIHESSVQI 1012

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  985 VSPSWKNSLLTEKKMKDRTHRTSTLRDQIERITKEKEKVTPRMnNLSPNKTSSSAKRFE----KWKILKRSNARFISKSP 1060
Cdd:CHL00204  1013 RSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITNTI-NISPNKTSYDSKIIEsskkIWQILKRRNTRLIRKSY 1091

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1061 LFGKFFIERIYTDLFLSIINIARINTEFFVESTKKIRDKSIFNNERKQGR---KKKNTIPFISTIKKPLDNIS--KRNSH 1135
Cdd:CHL00204  1092 YFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKEKinkKKQNTIHFISTIKKSLYNISnkNKNSK 1171

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1136 SFYDLSYVSQAYVLYRFSELQVNESSKLRSVLQYQGIPFFLKPEIKHSFERQGVLDSKLKDKQLPSYEMNQWKNWLRRHY 1215
Cdd:CHL00204  1172 IFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYFEAQGIFHSKLKHKNLLNSGMNQWKNWLRSHY 1251

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1216 QYDLSQIIWSRLIPEKWRNTVHHHRIAKAKkeNVSKQHSYEKNQFINSKKQKelkvDLKVDLKINQKENFSKYYRYDLLS 1295
Cdd:CHL00204  1252 QYDLSQIRWSRLVPQKWRNRVNQDRMVQNK--DLNKWDSYEKDRLIHYKKQN----DFEANSLLNQKDNFKKDYRYDLLS 1325

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1296 SKFLNYENKTecffygslFEGNKNQEIY--YNTPKRTFFDPLKNILITNYLGKVHslYIDMEKTADRKYLDWKILNFDLR 1373
Cdd:CHL00204  1326 YKSINYEDKK--------FQVNKNQEISynYNTRKVNLFDMPEGIAINNYLGKGD--ILDIEKNPDRKYLDWRILNFSLR 1395

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1374 QKADIQAWMTMDINRNQNTQIHPNNSQLIHKKDlfyLMIPEINSSKSPKGFLDWMGMNEKMLKRP--NLELWFFSELVSI 1451
Cdd:CHL00204  1396 KKVDIESWVDTDSKSKKNTKTGVNNYQIIDKID---HQDFENNQANKKKNFFDWMGMNEEILNRPisNLEFWFFPEFVLL 1472

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1452 YTAYKMKPWFIPSKFLFLNLNRNQksseKKKLNKKEKRNFLIASNK------EHPNQEERELTSRGDLGS---------- 1515
Cdd:CHL00204  1473 YNTYKIKPWIIPIKLLLLNLNGNE----NVNKKINQKKKGFIPSNEkksieiENRNQEEKEPAGQGELESdkekkgnles 1548

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1516 -ILPQQKDIDENSTRSDTKKEKKKQYK-SDTEAKLDFFLKRYLLFQLKWDDTLNQRMINNIKVYCLLLRLIDPRKITISS 1593
Cdd:CHL00204  1549 vLSNQEKNIEEDYAESDIKKRKNKKQYkSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINPREIAISS 1628

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1594 IQKREMSLDIMLIRDNFTPTELMKKGILIIEPIRLSGKKDGQFIMYQTVGISLVHKSKHQANKKYQEKRYLSKKKLDEAI 1673
Cdd:CHL00204  1629 IQRGEMSLDIMMIQKNLTLTELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFDESI 1708

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1674 SPHQRITGKRKKNHFDLLVPENILSFRRGRKLRILISFNSKNRNDVDRNPVFCNEKNVKNISQVSHDNNYLDRDQKKLMK 1753
Cdd:CHL00204  1709 TKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNSKNKNAVDRNSVFCNEKNVKNCGQVLDKKKDLDKDKNKLIK 1788

                         1850      1860      1870      1880
                   ....*....|....*....|....*....|....*....|....
gi 2431514022 1754 LKLFLWPNYRLEDLACLSRYWFDTNNGSRFSMLRIHLYPQLKIR 1797
Cdd:CHL00204  1789 LKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-882 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1248.26  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022   22 VVVVGLYYGFLTTLSIGPSYLFLLRAEVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 98
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022   99 LFHFFWNNHKHFLNYGPATRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMLARLVNISMFRCNNKMLFVTSSFVGWLIGH 178
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  179 ILFMKWLGLVLVWIRQNHSIRSNKYIRSNKYLVSELRNSMAQIFSILLFITCVYYFGRIPSPILTKKLKETSKTEEM--- 255
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKETSETEERyes 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  256 -------------------------EEDP-PS-FPKN-IDPKKIDERE--------------------------PVSKES 281
Cdd:pfam05758  241 eeetdveiettsetkgtkqeqerstEEDPsPSlFSEEgEDLDKIDETEeirvngkdkikdefhfhfretcyknsPIYETS 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  282 YLinlNENHDNSRLKIFDKKFEDKDPFRFDKPLVTLLFDSKRWNRPFRYIKNNKFDKAVRNEMSQYFFYICQSDGNERIS 361
Cdd:pfam05758  321 YL---DGNQENSKLEILKEKKKNKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERIS 397

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  362 FTYPPSLSTFLEIIKRKISSPILEKSSSNELYNPWVFTNKQKGKNLNKEFLNRIEALDKESISLNIFETRTQLCNDDSTK 441
Cdd:pfam05758  398 FTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKK 477

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  442 EYLSKRYDPFLNGSYRRRIYKSVSPSILKK---QNFPEKFGINRIHVILLPDT--DSDRKTNGFSKKSVSREIVDFFTFS 516
Cdd:pfam05758  478 EYLPKIYDPFLNGPYRGRIKKVFSPSIINKtsrKNSLEGVWINKIHGILLSSNypEFEQKINIFDRKSLSTEIDYFLNLI 557

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  517 IQFVREPGSiNLTRRSPSLFSEGR----------RYFQYLLTKIVTDPN-----VKAIRIKEISKKVPRWSYNLITELEQ 581
Cdd:pfam05758  558 NEFSKKSVS-SLNFKGLSLFPEQEqvkinseeekKILKFLFDAVRTDSNektirKKSIGIKEINKKVPRWSYKLIDELEQ 636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  582 QSGEHEEDVPIDHQIRSRKAKRVVIFTTNKEDTDPNTTD--TNTTDQTNEVALIRYSQQPDFRRGLIKGSMRAQRRKIVI 659
Cdd:pfam05758  637 LEGENEENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTkdTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVI 716

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  660 GELSQANVHSPLFLDRIEKSPLFSFDIFGLIKPIFRNWVGKEEAFKILKYIEEQTKRKEKNEKKIKKE-----KAQTEIA 734
Cdd:pfam05758  717 WELFQANVHSPLFLDRIDKPLFFSFDIFGLIKIIFKNWMRKKEEFKISSYTEEKTKESSKKEEDKKEDnkreeRARIEIA 796

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  735 ESWDTIPFAQVIRGCMLLTQSIFRKYILLPSLIISKNIGRILLLQFPEWSEDFKEWNREIHVKCTYNGVPLSETEFPQNW 814
Cdd:pfam05758  797 EAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPKNW 876

                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431514022  815 LTDGIQIKIFFPFCLKPWHKSKQESSPKDLMKKKKEKNDFSFLTILGMEAELPFGSPRKRPSFFKPIL 882
Cdd:pfam05758  877 LTDGIQIKILFPFRLKPWHKSKLRSSEKDLMKKKVQKNDFCFLTVWGMETELPFGSPRKRPSFFEPIF 944
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1797 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2474.55  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022    8 LGNLVSLCMKIINSVVVVGLYYGFLTTLSIGPSYLFLLRAEVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022   85 GRPHTITVLALPYLLFHFFWNNHKHFLNYGPATRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMLARLVNISMFRCNNKM 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  165 LFVTSSFVGWLIGHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKYLVSELRNSMAQIFSILLFITCVYYFGRIPSPILTK 244
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  245 KLKETSKTEEM----------------------------EEDP-PSF--PKNIDPKKIDEREpvskesylinlnENHDNS 293
Cdd:CHL00204   241 KLKETSETEERveseeetdveietasetkgtkqeqegstEEDPsPSLfsEEREDPDKIDETE------------EIRVNG 308

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  294 RLKIfdkkfeDKDPFRFDKPLVTLLFDSKRWNRPFRYIKNNKFDKAVRNEMSQYFFYICQSDGNERISFTYPPSLSTFLE 373
Cdd:CHL00204   309 KEKI------KKDLFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWE 382

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  374 IIKRKISSPILEKSSSNELYNPWVFTNKQKGKNLNKEFLNRIEALDKESISLNIFETRTQLCNDDSTKEYLSKRYDPFLN 453
Cdd:CHL00204   383 MIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLN 462

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  454 GSYRRRIYKSVSPSILKK---QNFPEKFGINRIHVILLPDTDS---DRKTNGFSKKSVSREIVDFFTFSIQFVREPGSiN 527
Cdd:CHL00204   463 GPYRGRIKKLFSPSIINEtsiKNNIEGVWINKIHGILLNNTDYqefEQKIDTFNKKSLSTEINESLTLINKFGAEPKS-S 541

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  528 LTRRSPSLFSE----------GRRYFQYLLTKIVTDPNV-----KAIRIKEISKKVPRWSYNLITELEQQSGEHEEDVPI 592
Cdd:CHL00204   542 LNLKGLSLFSEpeqekinseeEIKIFKFLFDAVITDPNDqtiikKSIGIKEISKKVPRWSYKLIDELEQLEGENEENVPS 621

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  593 DHQIRSRKAKRVVIFTTNKEDTDPNTTDTNTTDQ--TNEVALIRYSQQPDFRRGLIKGSMRAQRRKIVIGELSQANVHSP 670
Cdd:CHL00204   622 DHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSdqKDEVALIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQANVHSP 701

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  671 LFLDRIEKSPLFSFDIFGLIKPIFRNWVGKEEAFKILKYIEEQTKRKEKN-----EKKIKKEKAQTEIAESWDTIPFAQV 745
Cdd:CHL00204   702 LFLDRIDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKekkkeEEYKREEKARIEIAEAWDSILFAQV 781

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  746 IRGCMLLTQSIFRKYILLPSLIISKNIGRILLLQFPEWSEDFKEWNREIHVKCTYNGVPLSETEFPQNWLTDGIQIKIFF 825
Cdd:CHL00204   782 IRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKILF 861

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  826 PFCLKPWHKSKQESSPKDLMKKKKEK-NDFSFLTILGMEAELPFGSPRKRPSFFKPILKEFEKKIGKLKKKSFRVffraL 904
Cdd:CHL00204   862 PFYLKPWHRSKLRSSHKDRMKKKKKKkNDFCFLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIRKFKKKYFLV----L 937

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  905 IVFKGKTKLFRKTLKETKEWVIKSVIFLKRIIKEffkFLKGNLIRLFRLRevEIYESSEIREEKDSRINKKIIDESSSQI 984
Cdd:CHL00204   938 KILKERTKLFLKVSKETKKWIIKSFLFLKRIIKE---LSKRNPILLFGLR--EIYELNETKKEKDSIISNQMIHESSVQI 1012

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  985 VSPSWKNSLLTEKKMKDRTHRTSTLRDQIERITKEKEKVTPRMnNLSPNKTSSSAKRFE----KWKILKRSNARFISKSP 1060
Cdd:CHL00204  1013 RSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITNTI-NISPNKTSYDSKIIEsskkIWQILKRRNTRLIRKSY 1091

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1061 LFGKFFIERIYTDLFLSIINIARINTEFFVESTKKIRDKSIFNNERKQGR---KKKNTIPFISTIKKPLDNIS--KRNSH 1135
Cdd:CHL00204  1092 YFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKEKinkKKQNTIHFISTIKKSLYNISnkNKNSK 1171

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1136 SFYDLSYVSQAYVLYRFSELQVNESSKLRSVLQYQGIPFFLKPEIKHSFERQGVLDSKLKDKQLPSYEMNQWKNWLRRHY 1215
Cdd:CHL00204  1172 IFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYFEAQGIFHSKLKHKNLLNSGMNQWKNWLRSHY 1251

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1216 QYDLSQIIWSRLIPEKWRNTVHHHRIAKAKkeNVSKQHSYEKNQFINSKKQKelkvDLKVDLKINQKENFSKYYRYDLLS 1295
Cdd:CHL00204  1252 QYDLSQIRWSRLVPQKWRNRVNQDRMVQNK--DLNKWDSYEKDRLIHYKKQN----DFEANSLLNQKDNFKKDYRYDLLS 1325

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1296 SKFLNYENKTecffygslFEGNKNQEIY--YNTPKRTFFDPLKNILITNYLGKVHslYIDMEKTADRKYLDWKILNFDLR 1373
Cdd:CHL00204  1326 YKSINYEDKK--------FQVNKNQEISynYNTRKVNLFDMPEGIAINNYLGKGD--ILDIEKNPDRKYLDWRILNFSLR 1395

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1374 QKADIQAWMTMDINRNQNTQIHPNNSQLIHKKDlfyLMIPEINSSKSPKGFLDWMGMNEKMLKRP--NLELWFFSELVSI 1451
Cdd:CHL00204  1396 KKVDIESWVDTDSKSKKNTKTGVNNYQIIDKID---HQDFENNQANKKKNFFDWMGMNEEILNRPisNLEFWFFPEFVLL 1472

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1452 YTAYKMKPWFIPSKFLFLNLNRNQksseKKKLNKKEKRNFLIASNK------EHPNQEERELTSRGDLGS---------- 1515
Cdd:CHL00204  1473 YNTYKIKPWIIPIKLLLLNLNGNE----NVNKKINQKKKGFIPSNEkksieiENRNQEEKEPAGQGELESdkekkgnles 1548

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1516 -ILPQQKDIDENSTRSDTKKEKKKQYK-SDTEAKLDFFLKRYLLFQLKWDDTLNQRMINNIKVYCLLLRLIDPRKITISS 1593
Cdd:CHL00204  1549 vLSNQEKNIEEDYAESDIKKRKNKKQYkSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINPREIAISS 1628

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1594 IQKREMSLDIMLIRDNFTPTELMKKGILIIEPIRLSGKKDGQFIMYQTVGISLVHKSKHQANKKYQEKRYLSKKKLDEAI 1673
Cdd:CHL00204  1629 IQRGEMSLDIMMIQKNLTLTELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFDESI 1708

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022 1674 SPHQRITGKRKKNHFDLLVPENILSFRRGRKLRILISFNSKNRNDVDRNPVFCNEKNVKNISQVSHDNNYLDRDQKKLMK 1753
Cdd:CHL00204  1709 TKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNSKNKNAVDRNSVFCNEKNVKNCGQVLDKKKDLDKDKNKLIK 1788

                         1850      1860      1870      1880
                   ....*....|....*....|....*....|....*....|....
gi 2431514022 1754 LKLFLWPNYRLEDLACLSRYWFDTNNGSRFSMLRIHLYPQLKIR 1797
Cdd:CHL00204  1789 LKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-882 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1248.26  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022   22 VVVVGLYYGFLTTLSIGPSYLFLLRAEVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 98
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022   99 LFHFFWNNHKHFLNYGPATRNSMRNFSIQCVFLNNLIFQLFNHFILPSSMLARLVNISMFRCNNKMLFVTSSFVGWLIGH 178
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  179 ILFMKWLGLVLVWIRQNHSIRSNKYIRSNKYLVSELRNSMAQIFSILLFITCVYYFGRIPSPILTKKLKETSKTEEM--- 255
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKETSETEERyes 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  256 -------------------------EEDP-PS-FPKN-IDPKKIDERE--------------------------PVSKES 281
Cdd:pfam05758  241 eeetdveiettsetkgtkqeqerstEEDPsPSlFSEEgEDLDKIDETEeirvngkdkikdefhfhfretcyknsPIYETS 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  282 YLinlNENHDNSRLKIFDKKFEDKDPFRFDKPLVTLLFDSKRWNRPFRYIKNNKFDKAVRNEMSQYFFYICQSDGNERIS 361
Cdd:pfam05758  321 YL---DGNQENSKLEILKEKKKNKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERIS 397

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  362 FTYPPSLSTFLEIIKRKISSPILEKSSSNELYNPWVFTNKQKGKNLNKEFLNRIEALDKESISLNIFETRTQLCNDDSTK 441
Cdd:pfam05758  398 FTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKK 477

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  442 EYLSKRYDPFLNGSYRRRIYKSVSPSILKK---QNFPEKFGINRIHVILLPDT--DSDRKTNGFSKKSVSREIVDFFTFS 516
Cdd:pfam05758  478 EYLPKIYDPFLNGPYRGRIKKVFSPSIINKtsrKNSLEGVWINKIHGILLSSNypEFEQKINIFDRKSLSTEIDYFLNLI 557

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  517 IQFVREPGSiNLTRRSPSLFSEGR----------RYFQYLLTKIVTDPN-----VKAIRIKEISKKVPRWSYNLITELEQ 581
Cdd:pfam05758  558 NEFSKKSVS-SLNFKGLSLFPEQEqvkinseeekKILKFLFDAVRTDSNektirKKSIGIKEINKKVPRWSYKLIDELEQ 636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  582 QSGEHEEDVPIDHQIRSRKAKRVVIFTTNKEDTDPNTTD--TNTTDQTNEVALIRYSQQPDFRRGLIKGSMRAQRRKIVI 659
Cdd:pfam05758  637 LEGENEENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTkdTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVI 716

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  660 GELSQANVHSPLFLDRIEKSPLFSFDIFGLIKPIFRNWVGKEEAFKILKYIEEQTKRKEKNEKKIKKE-----KAQTEIA 734
Cdd:pfam05758  717 WELFQANVHSPLFLDRIDKPLFFSFDIFGLIKIIFKNWMRKKEEFKISSYTEEKTKESSKKEEDKKEDnkreeRARIEIA 796

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431514022  735 ESWDTIPFAQVIRGCMLLTQSIFRKYILLPSLIISKNIGRILLLQFPEWSEDFKEWNREIHVKCTYNGVPLSETEFPQNW 814
Cdd:pfam05758  797 EAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPKNW 876

                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431514022  815 LTDGIQIKIFFPFCLKPWHKSKQESSPKDLMKKKKEKNDFSFLTILGMEAELPFGSPRKRPSFFKPIL 882
Cdd:pfam05758  877 LTDGIQIKILFPFRLKPWHKSKLRSSEKDLMKKKVQKNDFCFLTVWGMETELPFGSPRKRPSFFEPIF 944
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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