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Conserved domains on  [gi|2216743485|ref|YP_010327916|]
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ribosomal protein L32 (chloroplast) [Sonchus fruticosus]

Protein Classification

50S ribosomal protein L32( domain architecture ID 10000120)

50S ribosomal protein L32

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpl32 CHL00152
ribosomal protein L32; Validated
 1-53 6.61e-20

ribosomal protein L32; Validated


:

Pssm-ID: 214377  Cd Length: 53  Bit Score: 73.52  E-value: 6.61e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2216743485  1 MAVPKKRTSISKKRIRKNIWKRKGYWAALKALSLGKSLSTGNSKSFFVRQTNK 53
Cdd:CHL00152   1 MAVPKKRTSKSKKRIRKNIWKRKAYKAALKAFSLAKSLSTGKSKSFFYQQTNK 53
 
Name Accession Description Interval E-value
rpl32 CHL00152
ribosomal protein L32; Validated
 1-53 6.61e-20

ribosomal protein L32; Validated


Pssm-ID: 214377  Cd Length: 53  Bit Score: 73.52  E-value: 6.61e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2216743485  1 MAVPKKRTSISKKRIRKNIWKRKGYWAALKALSLGKSLSTGNSKSFFVRQTNK 53
Cdd:CHL00152   1 MAVPKKRTSKSKKRIRKNIWKRKAYKAALKAFSLAKSLSTGKSKSFFYQQTNK 53
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
2-23 8.43e-03

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 30.26  E-value: 8.43e-03
                         10        20
                 ....*....|....*....|..
gi 2216743485  2 AVPKKRTSISKKRIRKNIWKRK 23
Cdd:pfam01783  1 AVPKRKTSKSRRRKRRAHWKLK 22
 
Name Accession Description Interval E-value
rpl32 CHL00152
ribosomal protein L32; Validated
 1-53 6.61e-20

ribosomal protein L32; Validated


Pssm-ID: 214377  Cd Length: 53  Bit Score: 73.52  E-value: 6.61e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2216743485  1 MAVPKKRTSISKKRIRKNIWKRKGYWAALKALSLGKSLSTGNSKSFFVRQTNK 53
Cdd:CHL00152   1 MAVPKKRTSKSKKRIRKNIWKRKAYKAALKAFSLAKSLSTGKSKSFFYQQTNK 53
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
2-23 8.43e-03

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 30.26  E-value: 8.43e-03
                         10        20
                 ....*....|....*....|..
gi 2216743485  2 AVPKKRTSISKKRIRKNIWKRK 23
Cdd:pfam01783  1 AVPKRKTSKSRRRKRRAHWKLK 22
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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