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Conserved domains on  [gi|2206971173|ref|YP_010290254|]
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cytochrome b (mitochondrion) [Bunaea alcinoe]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 15-370 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 621.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  15 IKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFF 94
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  95 FICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFTI 174
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 175 DNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLTLINPYLL 254
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 255 SDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQILFWFFLI 334
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2206971173 335 LFILLTWIGAHPIENPYIFISQMLTMFYFNYFIINP 370
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 15-370 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 621.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  15 IKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFF 94
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  95 FICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFTI 174
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 175 DNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLTLINPYLL 254
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 255 SDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQILFWFFLI 334
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2206971173 335 LFILLTWIGAHPIENPYIFISQMLTMFYFNYFIINP 370
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-368 2.72e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 346.01  E-value: 2.72e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  15 IKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFF 94
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  95 FICIYFHIGRGIYYESFNFKH--TWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSF 172
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 173 TIDNATLTRFYTFH-FLLPFIILMLTMIHLLFLHQTGSNNPLG----LSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLT 247
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 248 LINPYLlsDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLN 325
Cdd:COG1290   260 FFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2206971173 326 QILFWFFLILFILLTWIGAHPIenPYIFISQMLTMFYFNYFII 368
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 13-210 1.67e-80

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 244.97  E-value: 1.67e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  13 PMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGAS 92
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  93 FFFICIYFHIGRGIYYESFNFKH--TWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWG 170
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2206971173 171 SFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSN 210
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
22-208 4.59e-72

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 223.03  E-value: 4.59e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  22 LINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFFFICIYFH 101
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 102 IGRGIYYESFNFKH--TWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFTIDNATL 179
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2206971173 180 TRFYTFHFLLPFIILMLTMIHLLFLHQTG 208
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 262-348 2.77e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 2.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 262 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFS-KKFQGMQFYPLNQILFWFFLILFILLT 340
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVALWLG 144


                  ....*...
gi 2206971173 341 WIGAHPIE 348
Cdd:TIGR01156 145 IGATLPID 152
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 15-370 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 621.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  15 IKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFF 94
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  95 FICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFTI 174
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 175 DNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLTLINPYLL 254
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 255 SDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQILFWFFLI 334
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2206971173 335 LFILLTWIGAHPIENPYIFISQMLTMFYFNYFIINP 370
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 6-381 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 581.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   6 SPIQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRT 85
Cdd:MTH00145    3 SPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  86 LHANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLT 165
Cdd:MTH00145   83 LHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLV 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 166 NWIWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTL 245
Cdd:MTH00145  163 EWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVF 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 246 LTLINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLN 325
Cdd:MTH00145  243 LVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLN 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2206971173 326 QILFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYFIINPLTSMFWDNLLF 381
Cdd:MTH00145  323 QVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILD 378
CYTB MTH00119
cytochrome b; Provisional
 8-380 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 571.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   8 IQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLH 87
Cdd:MTH00119    5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  88 ANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNW 167
Cdd:MTH00119   85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 168 IWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLT 247
Cdd:MTH00119  165 IWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLA 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 248 LINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQI 327
Cdd:MTH00119  245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2206971173 328 LFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFN-YFIINPLTSMFWDNLL 380
Cdd:MTH00119  325 LFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTiLLILFPLLGALENKML 378
CYTB MTH00016
cytochrome b; Validated
 5-381 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 556.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   5 YSPIQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIR 84
Cdd:MTH00016    2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  85 TLHANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNML 164
Cdd:MTH00016   82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 165 TNWIWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLT 244
Cdd:MTH00016  162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 245 LLTLINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPL 324
Cdd:MTH00016  242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2206971173 325 NQILFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYFIINPLTSMFWDNLLF 381
Cdd:MTH00016  322 NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00131
cytochrome b; Provisional
 8-373 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 556.19  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   8 IQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLH 87
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  88 ANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNW 167
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 168 IWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLT 247
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 248 LINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQI 327
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 2206971173 328 LFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYF-IINPLTS 373
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFlVLMPLAG 370
CYTB MTH00191
cytochrome b; Provisional
 8-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 548.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   8 IQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLH 87
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  88 ANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNW 167
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 168 IWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLT 247
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 248 LINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQI 327
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2206971173 328 LFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYFII 368
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00074
cytochrome b; Provisional
 7-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 546.20  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   7 PIQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTL 86
Cdd:MTH00074    4 PIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  87 HANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTN 166
Cdd:MTH00074   84 HANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQ 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 167 WIWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLL 246
Cdd:MTH00074  164 WIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 247 TLINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQ 326
Cdd:MTH00074  244 SLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQ 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2206971173 327 ILFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYFIINPLTSMFWDNLL 380
Cdd:MTH00074  324 ILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00100
cytochrome b; Provisional
 6-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 543.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   6 SPIQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRT 85
Cdd:MTH00100    2 TNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  86 LHANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLT 165
Cdd:MTH00100   82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 166 NWIWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTL 245
Cdd:MTH00100  162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLML 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 246 LTLINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLN 325
Cdd:MTH00100  242 LVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLS 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2206971173 326 QILFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYFII-NPLTSMFWDNLL 380
Cdd:MTH00100  322 QCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILIlMPIASLIENNLL 377
CYTB MTH00034
cytochrome b; Validated
 5-381 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 513.87  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   5 YSPIQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIR 84
Cdd:MTH00034    1 TGPLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  85 TLHANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNML 164
Cdd:MTH00034   81 NIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 165 TNWIWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLT 244
Cdd:MTH00034  161 VQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 245 LLTLINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPL 324
Cdd:MTH00034  241 SLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2206971173 325 NQILFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYFII-NPLTSMFWDNLLF 381
Cdd:MTH00034  321 SQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFfFPLISYLENKLIF 378
CYTB MTH00224
cytochrome b; Provisional
 5-380 2.72e-166

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 470.17  E-value: 2.72e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   5 YSPIQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIR 84
Cdd:MTH00224    2 FKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  85 TLHANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNML 164
Cdd:MTH00224   82 SIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 165 TNWIWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLT 244
Cdd:MTH00224  162 VEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLS 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 245 LLTLINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPL 324
Cdd:MTH00224  242 LMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2206971173 325 NQILFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYFIINPLTSMFWDNLL 380
Cdd:MTH00224  322 NQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00022
cytochrome b; Validated
 7-381 1.48e-161

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 458.01  E-value: 1.48e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   7 PIQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTL 86
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  87 HANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTN 166
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 167 WIWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLL 246
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 247 TLINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQ 326
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2206971173 327 ILFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYF-IINPLTSMFWDNLLF 381
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFlVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 8-368 9.82e-158

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 448.39  E-value: 9.82e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173   8 IQKTHPMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLH 87
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  88 ANGASFFFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNW 167
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 168 IWGSFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLT 247
Cdd:MTH00053  165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 248 LINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQI 327
Cdd:MTH00053  245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2206971173 328 LFWFFLILFILLTWIGAHPIENPYIFISQMLTMFYFNYFII 368
Cdd:MTH00053  325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
 20-368 2.69e-124

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 363.49  E-value: 2.69e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  20 NSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFFFICIY 99
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 100 FHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFTIDNATL 179
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 180 TRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVIlLMLLTLLTLINPY---LLSD 256
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLI-LFGVFVIIGIEPRietLLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 257 PDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQILFWFFLILF 336
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                         330       340       350
                  ....*....|....*....|....*....|...
gi 2206971173 337 ILLTWIGAHPI-ENPYIFISQMLTMFYFNYFII 368
Cdd:MTH00033  332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-368 2.72e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 346.01  E-value: 2.72e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  15 IKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFF 94
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  95 FICIYFHIGRGIYYESFNFKH--TWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSF 172
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 173 TIDNATLTRFYTFH-FLLPFIILMLTMIHLLFLHQTGSNNPLG----LSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLT 247
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 248 LINPYLlsDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLN 325
Cdd:COG1290   260 FFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2206971173 326 QILFWFFLILFILLTWIGAHPIenPYIFISQMLTMFYFNYFII 368
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLI 378
CYTB MTH00086
cytochrome b; Provisional
 16-368 8.05e-117

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 343.46  E-value: 8.05e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  16 KIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFFF 95
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  96 ICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFTID 175
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 176 NATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVIlLMLLTLLTLINPYLLS 255
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIF-WLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 256 DPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTfskKFQGMQFYPLNQILFWFFLIL 335
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|...
gi 2206971173 336 FILLTWIGAHPIENPYIFISQMLTMFYFNYFII 368
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
CYTB MTH00046
cytochrome b; Validated
 14-361 3.87e-82

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 254.91  E-value: 3.87e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  14 MIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASF 93
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  94 FFICIYFHIGRGIYYESFNFKHTWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFT 173
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 174 IDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSNNPLGLSNNM-DKIPFHPFFTYKDLMGFVILLMLLTLLTLINPY 252
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 253 LLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVialfmsILILIILPFTFSKKFQGMQFYPL-NQILFWF 331
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGL------VLVLSFLFFLWVPTFNGSSVYSVwRQVNFWL 314

                         330       340       350
                  ....*....|....*....|....*....|
gi 2206971173 332 FLILFILLTWIGAHPIENPYIFISQMLTMF 361
Cdd:MTH00046  315 IVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 13-210 1.67e-80

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 244.97  E-value: 1.67e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  13 PMIKIINNSLINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGAS 92
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  93 FFFICIYFHIGRGIYYESFNFKH--TWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWG 170
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2206971173 171 SFTIDNATLTRFYTFHFLLPFIILMLTMIHLLFLHQTGSN 210
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
22-208 4.59e-72

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 223.03  E-value: 4.59e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  22 LINLPSPSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFFFICIYFH 101
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 102 IGRGIYYESFNFKH--TWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFTIDNATL 179
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2206971173 180 TRFYTFHFLLPFIILMLTMIHLLFLHQTG 208
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 211-357 2.73e-42

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 144.71  E-value: 2.73e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 211 NPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLTLINPYLLSDPDNFTPANPLVTPIHIQPEWYFLFAYAILRSIPN 290
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2206971173 291 KLGGVIALFMSILILIILPFTFSKKFQGmQFYPLNQILFWFFLILFILLTWIGAHPIENPYIFISQM 357
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
262-362 1.77e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 136.07  E-value: 1.77e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 262 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFSKKFQGMQFYPLNQILFWFFLILFILLTW 341
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2206971173 342 IGAHPIENPYIFISQMLTMFY 362
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
92-257 3.11e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 137.76  E-value: 3.11e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  92 SFFFICIYFHIGRGIYYESFNFKH--TWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIW 169
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 170 GSFTIDNATLTRFYTFHF-LLPFIILMLTMIHLLFLHQTGSNNPLGLSNNMDKIPFHPFFTYKDLMGFVILLMLLTLLTL 248
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2206971173 249 INPYLLSDP 257
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 37-213 4.99e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 128.29  E-value: 4.99e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  37 FGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFFFICIYFHIGRGIYYESFNFKH- 115
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 116 -TWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFTIDNATLTRFYTFH-FLLPFII 193
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 2206971173 194 LMLTMIHLLFLHQTGSNNPL 213
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 28-213 8.17e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 114.05  E-value: 8.17e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173  28 PSNISSWWNFGSLLALCLIIQILTGIFLTMYYTANIELAFFSVNYICRNVNYGWLIRTLHANGASFFFICIYFHIGRgiY 107
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--V 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 108 YESFNFKH----TWFIGMIILFMLLMTAFMGYVLPWGQMSFWGATVITNLFSAIPYLGNMLTNWIWGSFTIDNATLTRFY 183
Cdd:CHL00070  105 YLTGGFKKprelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFY 184

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2206971173 184 TFH-FLLPFIILMLTMIHLLFLHQTGSNNPL 213
Cdd:CHL00070  185 SLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 262-348 1.43e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.42  E-value: 1.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 262 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFS-KKFQGMQFYPLNQILFWFFLILFILLT 340
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAVFLFGTLVTLWLG 145


                  ....*...
gi 2206971173 341 WIGAHPIE 348
Cdd:COG5679   146 IGAALPID 153
petD CHL00058
cytochrome b6/f complex subunit IV
 262-343 2.10e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 58.86  E-value: 2.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 262 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFS-KKFQGMQFYPLNQILfwfFLILFILLT 340
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPVATTV---FLIGTAVAL 141


                  ...
gi 2206971173 341 WIG 343
Cdd:CHL00058  142 WLG 144
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 262-348 2.77e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 2.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2206971173 262 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSILILIILPFTFS-KKFQGMQFYPLNQILFWFFLILFILLT 340
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVALWLG 144


                  ....*...
gi 2206971173 341 WIGAHPIE 348
Cdd:TIGR01156 145 IGATLPID 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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