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Conserved domains on  [gi|2192921030|ref|YP_010258298|]
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Ycf2 (chloroplast) [Camelina neglecta]

Protein Classification

Ycf2( domain architecture ID 11414145)

Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2289 0e+00

Ycf2; Provisional


:

Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4154.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSCNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  161 WVLPITQKCIMPESNWSSRWWRNWIGKKRDFSCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNNIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPEES 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  561 LGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRH--ESEERFQEMADLFTLSITEPDLVYHKGFAFSI 638
Cdd:CHL00206   561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHdfESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  639 DSYGLDQRQFLKEVFNFRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDP--KRVVFASNNIMEAVNQYR 716
Cdd:CHL00206   641 DSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPkpKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  717 LIRNMIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 796
Cdd:CHL00206   721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  797 SQTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDQLCINQYSIDWSEVIDKKDLSKSLRFFLSKllrff 876
Cdd:CHL00206   799 SRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSK----- 873

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  877 lskLLLFLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 956
Cdd:CHL00206   874 ---LLLFLSKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  957 KFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1036
Cdd:CHL00206   951 KFLINGGTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1037 HHFCFYCNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1116
Cdd:CHL00206  1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1117 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTP 1196
Cdd:CHL00206  1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1197 CSEKYL---QRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSS 1273
Cdd:CHL00206  1189 CSEKYLpseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSS 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1274 QKFVSIFHDIMHGLDISWRILQKKL--CLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISTHLRSPNVREVLYSILF 1351
Cdd:CHL00206  1269 QKFVSIFHDIMHGSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYSILF 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1352 LLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRGS 1431
Cdd:CHL00206  1349 LLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGS 1428

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1432 GGNMLWGGDPAYGVKSIRSKKKDLKKNFidiIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWIDDKI 1511
Cdd:CHL00206  1429 GGNMLLGGGPAYGVKSIRSKKKYLNINL---IDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKI 1505

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1512 ESWVANSDSIDDKEREFLVQFSTLRSEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTS 1591
Cdd:CHL00206  1506 ESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTS 1585

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1592 CLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1671
Cdd:CHL00206  1586 CLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1665

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1672 FLDNKPKGFFIDDIDIDDSDDIDASNDIDRELDTerELLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHD 1751
Cdd:CHL00206  1666 FLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT--ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHD 1743

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1752 LDVNESSYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH 1831
Cdd:CHL00206  1744 LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH 1823

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1832 LEKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVA 1911
Cdd:CHL00206  1824 LEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVA 1903

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1912 QNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPVPDEKNRITSYGFIE 1991
Cdd:CHL00206  1904 QNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVE 1983

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1992 NDSDLVHGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLYEKYESEFEEGE--GVLD 2069
Cdd:CHL00206  1984 NDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEseGALD 2063

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 2070 PQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYLAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDRSSK 2149
Cdd:CHL00206  2064 PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSK 2143

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 2150 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQRQRW 2229
Cdd:CHL00206  2144 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQRW 2223

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 2230 LRTNSSLskSNGFFRSNTRSESYQYLSNLFLSNGTLLDRMTKTLLKKRWLFSDEMKTGFM 2289
Cdd:CHL00206  2224 LRTNSSL--SNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2289 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4154.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSCNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  161 WVLPITQKCIMPESNWSSRWWRNWIGKKRDFSCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNNIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPEES 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  561 LGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRH--ESEERFQEMADLFTLSITEPDLVYHKGFAFSI 638
Cdd:CHL00206   561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHdfESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  639 DSYGLDQRQFLKEVFNFRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDP--KRVVFASNNIMEAVNQYR 716
Cdd:CHL00206   641 DSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPkpKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  717 LIRNMIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 796
Cdd:CHL00206   721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  797 SQTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDQLCINQYSIDWSEVIDKKDLSKSLRFFLSKllrff 876
Cdd:CHL00206   799 SRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSK----- 873

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  877 lskLLLFLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 956
Cdd:CHL00206   874 ---LLLFLSKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  957 KFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1036
Cdd:CHL00206   951 KFLINGGTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1037 HHFCFYCNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1116
Cdd:CHL00206  1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1117 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTP 1196
Cdd:CHL00206  1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1197 CSEKYL---QRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSS 1273
Cdd:CHL00206  1189 CSEKYLpseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSS 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1274 QKFVSIFHDIMHGLDISWRILQKKL--CLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISTHLRSPNVREVLYSILF 1351
Cdd:CHL00206  1269 QKFVSIFHDIMHGSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYSILF 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1352 LLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRGS 1431
Cdd:CHL00206  1349 LLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGS 1428

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1432 GGNMLWGGDPAYGVKSIRSKKKDLKKNFidiIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWIDDKI 1511
Cdd:CHL00206  1429 GGNMLLGGGPAYGVKSIRSKKKYLNINL---IDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKI 1505

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1512 ESWVANSDSIDDKEREFLVQFSTLRSEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTS 1591
Cdd:CHL00206  1506 ESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTS 1585

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1592 CLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1671
Cdd:CHL00206  1586 CLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1665

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1672 FLDNKPKGFFIDDIDIDDSDDIDASNDIDRELDTerELLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHD 1751
Cdd:CHL00206  1666 FLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT--ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHD 1743

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1752 LDVNESSYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH 1831
Cdd:CHL00206  1744 LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH 1823

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1832 LEKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVA 1911
Cdd:CHL00206  1824 LEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVA 1903

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1912 QNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPVPDEKNRITSYGFIE 1991
Cdd:CHL00206  1904 QNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVE 1983

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1992 NDSDLVHGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLYEKYESEFEEGE--GVLD 2069
Cdd:CHL00206  1984 NDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEseGALD 2063

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 2070 PQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYLAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDRSSK 2149
Cdd:CHL00206  2064 PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSK 2143

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 2150 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQRQRW 2229
Cdd:CHL00206  2144 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQRW 2223

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 2230 LRTNSSLskSNGFFRSNTRSESYQYLSNLFLSNGTLLDRMTKTLLKKRWLFSDEMKTGFM 2289
Cdd:CHL00206  2224 LRTNSSL--SNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1489 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2748.76  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSCNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  161 WVLPITQKCIMPESNWSSRWWRNWIGKKRDFSCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNNIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPEES 480
Cdd:pfam05695  401 RDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:pfam05695  481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  561 LGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRH--ESEERFQEMADLFTLSITEPDLVYHKGFAFSI 638
Cdd:pfam05695  561 PGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHdfESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  639 DSYGLDQRQFLKEVFNFRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLED--PKRVVFASNNIMEAVNQYR 716
Cdd:pfam05695  641 DSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDpkPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  717 LIRNMIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 796
Cdd:pfam05695  721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  797 SQTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDQLCINQYSIDWSEVIDKKDLSKSLRFFLSKllrff 876
Cdd:pfam05695  799 SRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSK----- 873

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  877 lskLLLFLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 956
Cdd:pfam05695  874 ---SLLFLSKFLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  957 KFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1036
Cdd:pfam05695  951 KFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1037 HHFCFYCNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1116
Cdd:pfam05695 1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1117 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTP 1196
Cdd:pfam05695 1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1197 CSEKYL---QRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSS 1273
Cdd:pfam05695 1189 CSEKYLpseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSS 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1274 QKFVSIFHDIMHGLDISWRILQKKLCLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISTHLRSPNVREVLYSILFLL 1353
Cdd:pfam05695 1269 QKFVSIFHDIMHGSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPLISTHLRSPNVREFFYSILFLL 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1354 LVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRG--S 1431
Cdd:pfam05695 1349 LVAGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGsaS 1428

                         1450      1460      1470      1480      1490
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2192921030 1432 GGNMLWGGDPAYGVKSIRSKKKDLKKNFIDIIDLISIIPNPINRITFSRNTRHLSHTS 1489
Cdd:pfam05695 1429 GGNMLLGGGPAYGVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1625-1809 2.14e-78

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 256.15  E-value: 2.14e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1625 KPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIddsddidasndidreld 1704
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDG----------------- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1705 terelltmmnaltmDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN-------ESSYLALGLLVNSLSRDCERCS 1777
Cdd:cd19505     64 --------------MLILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSS 129

                          170       180       190
                   ....*....|....*....|....*....|..
gi 2192921030 1778 TRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1809
Cdd:cd19505    130 TRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1630-1884 9.73e-09

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 59.25  E-value: 9.73e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1630 RLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITV----FLNKFLdnkpkGffiddididdsddidasndidrelDT 1705
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgseLVSKYI-----G------------------------EG 156

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1706 ERELltmmnaltmdmmSEIdrfyitlqFELAKAMSPCIIWIPNI--------HDLDVNESSYLalgllVNSL-------- 1769
Cdd:COG1222    157 ARNV------------REV--------FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT-----VNQLlaeldgfe 211

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1770 SRDcercstrNILVIASTHIPQKVDPALIAPNKLNtcikiRRLLIP----QQRKHFFTLsYTRGFHLEKKMFhtngFESI 1845
Cdd:COG1222    212 SRG-------DVLIIAATNRPDLLDPALLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLADDVD----LDKL 274

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 2192921030 1846 ---TMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1884
Cdd:COG1222    275 aklTEGFSGADLKAIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2289 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4154.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSCNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  161 WVLPITQKCIMPESNWSSRWWRNWIGKKRDFSCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNNIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPEES 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  561 LGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRH--ESEERFQEMADLFTLSITEPDLVYHKGFAFSI 638
Cdd:CHL00206   561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHdfESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  639 DSYGLDQRQFLKEVFNFRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDP--KRVVFASNNIMEAVNQYR 716
Cdd:CHL00206   641 DSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPkpKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  717 LIRNMIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 796
Cdd:CHL00206   721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  797 SQTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDQLCINQYSIDWSEVIDKKDLSKSLRFFLSKllrff 876
Cdd:CHL00206   799 SRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSK----- 873

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  877 lskLLLFLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 956
Cdd:CHL00206   874 ---LLLFLSKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  957 KFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1036
Cdd:CHL00206   951 KFLINGGTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1037 HHFCFYCNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1116
Cdd:CHL00206  1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1117 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTP 1196
Cdd:CHL00206  1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1197 CSEKYL---QRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSS 1273
Cdd:CHL00206  1189 CSEKYLpseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSS 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1274 QKFVSIFHDIMHGLDISWRILQKKL--CLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISTHLRSPNVREVLYSILF 1351
Cdd:CHL00206  1269 QKFVSIFHDIMHGSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYSILF 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1352 LLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRGS 1431
Cdd:CHL00206  1349 LLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGS 1428

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1432 GGNMLWGGDPAYGVKSIRSKKKDLKKNFidiIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWIDDKI 1511
Cdd:CHL00206  1429 GGNMLLGGGPAYGVKSIRSKKKYLNINL---IDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKI 1505

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1512 ESWVANSDSIDDKEREFLVQFSTLRSEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTS 1591
Cdd:CHL00206  1506 ESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTS 1585

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1592 CLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1671
Cdd:CHL00206  1586 CLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1665

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1672 FLDNKPKGFFIDDIDIDDSDDIDASNDIDRELDTerELLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHD 1751
Cdd:CHL00206  1666 FLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT--ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHD 1743

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1752 LDVNESSYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH 1831
Cdd:CHL00206  1744 LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH 1823

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1832 LEKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVA 1911
Cdd:CHL00206  1824 LEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVA 1903

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1912 QNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPVPDEKNRITSYGFIE 1991
Cdd:CHL00206  1904 QNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVE 1983

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1992 NDSDLVHGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLYEKYESEFEEGE--GVLD 2069
Cdd:CHL00206  1984 NDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGEseGALD 2063

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 2070 PQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYLAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDRSSK 2149
Cdd:CHL00206  2064 PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSK 2143

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 2150 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQRQRW 2229
Cdd:CHL00206  2144 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQRW 2223

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 2230 LRTNSSLskSNGFFRSNTRSESYQYLSNLFLSNGTLLDRMTKTLLKKRWLFSDEMKTGFM 2289
Cdd:CHL00206  2224 LRTNSSL--SNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1489 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2748.76  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSCNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  161 WVLPITQKCIMPESNWSSRWWRNWIGKKRDFSCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNNIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPEES 480
Cdd:pfam05695  401 RDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:pfam05695  481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  561 LGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRH--ESEERFQEMADLFTLSITEPDLVYHKGFAFSI 638
Cdd:pfam05695  561 PGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHdfESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  639 DSYGLDQRQFLKEVFNFRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLED--PKRVVFASNNIMEAVNQYR 716
Cdd:pfam05695  641 DSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDpkPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  717 LIRNMIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 796
Cdd:pfam05695  721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  797 SQTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDQLCINQYSIDWSEVIDKKDLSKSLRFFLSKllrff 876
Cdd:pfam05695  799 SRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSK----- 873

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  877 lskLLLFLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 956
Cdd:pfam05695  874 ---SLLFLSKFLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030  957 KFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1036
Cdd:pfam05695  951 KFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1037 HHFCFYCNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1116
Cdd:pfam05695 1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1117 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTP 1196
Cdd:pfam05695 1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1197 CSEKYL---QRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSS 1273
Cdd:pfam05695 1189 CSEKYLpseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSS 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1274 QKFVSIFHDIMHGLDISWRILQKKLCLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISTHLRSPNVREVLYSILFLL 1353
Cdd:pfam05695 1269 QKFVSIFHDIMHGSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPLISTHLRSPNVREFFYSILFLL 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1354 LVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRG--S 1431
Cdd:pfam05695 1349 LVAGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGsaS 1428

                         1450      1460      1470      1480      1490
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2192921030 1432 GGNMLWGGDPAYGVKSIRSKKKDLKKNFIDIIDLISIIPNPINRITFSRNTRHLSHTS 1489
Cdd:pfam05695 1429 GGNMLLGGGPAYGVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1625-1809 2.14e-78

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 256.15  E-value: 2.14e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1625 KPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIddsddidasndidreld 1704
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDG----------------- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1705 terelltmmnaltmDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN-------ESSYLALGLLVNSLSRDCERCS 1777
Cdd:cd19505     64 --------------MLILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSS 129

                          170       180       190
                   ....*....|....*....|....*....|..
gi 2192921030 1778 TRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1809
Cdd:cd19505    130 TRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 1626-1809 1.15e-10

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 61.92  E-value: 1.15e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1626 PFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVflnkfldnkpKGFfiddididdsddidasndidreldt 1705
Cdd:cd19481     16 SRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVV----------KLS------------------------- 60

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1706 erELLTMMNALTMDMMSEIdrfyitlqFELAKAMSPCIIWIPNIHDL-----DVNESSYL--ALGLLVNSLSRDCERcst 1778
Cdd:cd19481     61 --SLLSKYVGESEKNLRKI--------FERARRLAPCILFIDEIDAIgrkrdSSGESGELrrVLNQLLTELDGVNSR--- 127

                          170       180       190
                   ....*....|....*....|....*....|.
gi 2192921030 1779 RNILVIASTHIPQKVDPALIAPNKLNTCIKI 1809
Cdd:cd19481    128 SKVLVIAATNRPDLLDPALLRPGRFDEVIEF 158
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1630-1884 9.73e-09

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 59.25  E-value: 9.73e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1630 RLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITV----FLNKFLdnkpkGffiddididdsddidasndidrelDT 1705
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgseLVSKYI-----G------------------------EG 156

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1706 ERELltmmnaltmdmmSEIdrfyitlqFELAKAMSPCIIWIPNI--------HDLDVNESSYLalgllVNSL-------- 1769
Cdd:COG1222    157 ARNV------------REV--------FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT-----VNQLlaeldgfe 211

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1770 SRDcercstrNILVIASTHIPQKVDPALIAPNKLNtcikiRRLLIP----QQRKHFFTLsYTRGFHLEKKMFhtngFESI 1845
Cdd:COG1222    212 SRG-------DVLIIAATNRPDLLDPALLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLADDVD----LDKL 274

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 2192921030 1846 ---TMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1884
Cdd:COG1222    275 aklTEGFSGADLKAIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 1639-1798 1.65e-08

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 54.91  E-value: 1.65e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1639 ILVIGSIGTGRSYLVKYLATNSYVPFITV----FLNKFLDNKPKGFfiddididdsddidasndidreldteRELltmmn 1714
Cdd:pfam00004    1 LLLYGPPGTGKTTLAKAVAKELGAPFIEIsgseLVSKYVGESEKRL--------------------------REL----- 49

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1715 altmdmmseidrfyitlqFELAKAMSPCIIWIPNIH------DLDVNESSYLALGLLVNSLSRdcERCSTRNILVIASTH 1788
Cdd:pfam00004   50 ------------------FEAAKKLAPCVIFIDEIDalagsrGSGGDSESRRVVNQLLTELDG--FTSSNSKVIVIAATN 109

                          170
                   ....*....|
gi 2192921030 1789 IPQKVDPALI 1798
Cdd:pfam00004  110 RPDKLDPALL 119
RecA-like_CDC48_r2-like cd19511
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ...
 1623-1807 1.56e-05

second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410919 [Multi-domain]  Cd Length: 159  Bit Score: 47.28  E-value: 1.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1623 HGKPFSlRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVflnkfldnkpKGffiddididdsddidasndidre 1702
Cdd:cd19511     15 HPDAFK-RLGIRPPKGVLLYGPPGCGKTLLAKALASEAGLNFISV----------KG----------------------- 60

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1703 ldteRELLTMMNALTMDMMSEIdrfyitlqFELAKAMSPCIIWIPNIHDLDVNESSYLALGL---LVNSLSRDCERCST- 1778
Cdd:cd19511     61 ----PELFSKYVGESERAVREI--------FQKARQAAPCIIFFDEIDSLAPRRGQSDSSGVtdrVVSQLLTELDGIESl 128

                          170       180
                   ....*....|....*....|....*....
gi 2192921030 1779 RNILVIASTHIPQKVDPALIAPNKLNTCI 1807
Cdd:cd19511    129 KGVVVIAATNRPDMIDPALLRPGRLDKLI 157
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 1629-1784 8.14e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 39.41  E-value: 8.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1629 LRLALSPSRS-----ILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIDDSDDIDASNDIDREL 1703
Cdd:pfam13191   12 LLDALDRVRSgrppsVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDENLPYSPLLEALTREGLLRQLLDELESSLL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921030 1704 DTERELLTMMNALTMDMMS-EIDRFYITLQFELAKAMS---PCIIWIPNIHDLDvnESSYLALGLLVNSLSRdcercstR 1779
Cdd:pfam13191   92 EAWRAALLEALAPVPELPGdLAERLLDLLLRLLDLLARgerPLVLVLDDLQWAD--EASLQLLAALLRLLES-------L 162


                   ....*
gi 2192921030 1780 NILVI 1784
Cdd:pfam13191  163 PLLVV 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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