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Conserved domains on  [gi|2091535798|ref|YP_010173306|]
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ribosomal protein L36 (plastid) [Medicago praecox]

Protein Classification

ribosomal protein bL36( domain architecture ID 10011449)

ribosomal protein bL36 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 1.87e-05

50S ribosomal protein L36; Reviewed


:

Pssm-ID: 179039  Cd Length: 37  Bit Score: 36.08  E-value: 1.87e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2091535798  1 MKVGASVRKICEKCRLIRRRGRIIVICSNPKHKQRQG 37
Cdd:PRK00465   1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 1.87e-05

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 36.08  E-value: 1.87e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2091535798  1 MKVGASVRKICEKCRLIRRRGRIIVICSNPKHKQRQG 37
Cdd:PRK00465   1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 8.20e-03

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 29.32  E-value: 8.20e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535798  1 MKVGASVRKICEKCRLIRRRGRIIVICS-NPKHKQRQG 37
Cdd:COG0257    1 MKVRASVKKICRDCKVVRRKGRVYVICKkNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 9.89e-03

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 29.02  E-value: 9.89e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535798  1 MKVGASVRKICEKCRLIRRRGRIIVIC-SNPKHKQRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICkKNPRHKQRQG 38
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 1.87e-05

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 36.08  E-value: 1.87e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2091535798  1 MKVGASVRKICEKCRLIRRRGRIIVICSNPKHKQRQG 37
Cdd:PRK00465   1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 8.20e-03

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 29.32  E-value: 8.20e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535798  1 MKVGASVRKICEKCRLIRRRGRIIVICS-NPKHKQRQG 37
Cdd:COG0257    1 MKVRASVKKICRDCKVVRRKGRVYVICKkNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 9.89e-03

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 29.02  E-value: 9.89e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535798  1 MKVGASVRKICEKCRLIRRRGRIIVIC-SNPKHKQRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICkKNPRHKQRQG 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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