NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2091535796|ref|YP_010173288|]
View 

photosystem II protein L (plastid) [Medicago praecox]

Protein Classification

photosystem II reaction center protein L( domain architecture ID 10000036)

photosystem II reaction center protein L (PSII-L) is one of the components of the core complex of photosystem II (PSII), which is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Gene Ontology:  GO:0015979|GO:0016020|GO:0009523
PubMed:  31641747|23527694

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
psbL CHL00038
photosystem II protein L
 1-38 8.71e-19

photosystem II protein L


:

Pssm-ID: 176979  Cd Length: 38  Bit Score: 69.73  E-value: 8.71e-19
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535796  1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
Cdd:CHL00038   1 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
 
Name Accession Description Interval E-value
psbL CHL00038
photosystem II protein L
 1-38 8.71e-19

photosystem II protein L


Pssm-ID: 176979  Cd Length: 38  Bit Score: 69.73  E-value: 8.71e-19
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535796  1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
Cdd:CHL00038   1 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
PsbL COG5726
Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem ...
 1-38 1.35e-12

Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem II reaction center protein L, PsbL is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444436  Cd Length: 38  Bit Score: 53.98  E-value: 1.35e-12
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535796  1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
Cdd:COG5726    1 MRTPNPNNQPVELNRTSLYLGLLLVFVLALLFSSYFFN 38
PsbL pfam02419
PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from ...
 2-38 1.24e-11

PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from plants and Cyanobacteria. The function of this small protein is unknown. Interestingly the mRNA for this protein requires a post-transcriptional modification of an ACG triplet to form an AUG initiator codon.


Pssm-ID: 396815  Cd Length: 37  Bit Score: 51.70  E-value: 1.24e-11
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2091535796  2 TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
Cdd:pfam02419  1 RSPNPNNQPVELNRTSLYLGLLLVFVLALLFSSYFFN 37
 
Name Accession Description Interval E-value
psbL CHL00038
photosystem II protein L
 1-38 8.71e-19

photosystem II protein L


Pssm-ID: 176979  Cd Length: 38  Bit Score: 69.73  E-value: 8.71e-19
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535796  1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
Cdd:CHL00038   1 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
PsbL COG5726
Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem ...
 1-38 1.35e-12

Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem II reaction center protein L, PsbL is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444436  Cd Length: 38  Bit Score: 53.98  E-value: 1.35e-12
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535796  1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
Cdd:COG5726    1 MRTPNPNNQPVELNRTSLYLGLLLVFVLALLFSSYFFN 38
PsbL pfam02419
PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from ...
 2-38 1.24e-11

PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from plants and Cyanobacteria. The function of this small protein is unknown. Interestingly the mRNA for this protein requires a post-transcriptional modification of an ACG triplet to form an AUG initiator codon.


Pssm-ID: 396815  Cd Length: 37  Bit Score: 51.70  E-value: 1.24e-11
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2091535796  2 TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
Cdd:pfam02419  1 RSPNPNNQPVELNRTSLYLGLLLVFVLALLFSSYFFN 37
psbL PRK00753
photosystem II reaction center L; Provisional
 1-38 9.46e-10

photosystem II reaction center L; Provisional


Pssm-ID: 134373  Cd Length: 39  Bit Score: 47.05  E-value: 9.46e-10
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2091535796  1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
Cdd:PRK00753   2 ERNPNPNKQPVELNRTSLYLGLLLVFVLGILFSSYFFN 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH