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Conserved domains on  [gi|2055416231|ref|YP_010131099|]
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NADH-plastoquinone oxidoreductase subunit 3 (chloroplast) [Benincasa hispida]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 3( domain architecture ID 10000018)

NAD(P)H-quinone oxidoreductase subunit 3 (NDH-C) is part of the NDH-1 complex that catalyzes the transfer of electrons from NAD(P)H to quinone in a respiratory and/or photosynthetic chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 3.56e-75

NADH dehydrogenase subunit 3


:

Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 218.32  E-value: 3.56e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   1 MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022    1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2055416231  81 PWAMSFDVLGVSVFIEAIIFVLILIVGLVYAWRKGALEWS 120
Cdd:CHL00022   81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 3.56e-75

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 218.32  E-value: 3.56e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   1 MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022    1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2055416231  81 PWAMSFDVLGVSVFIEAIIFVLILIVGLVYAWRKGALEWS 120
Cdd:CHL00022   81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-119 2.79e-39

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 127.54  E-value: 2.79e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   3 LLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPW 82
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2055416231  83 AMSFDVLGVSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 8.11e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 125.61  E-value: 8.11e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  25 FLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAIIFVLIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 2055416231 105 IVGLVYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 3.56e-75

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 218.32  E-value: 3.56e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   1 MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022    1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2055416231  81 PWAMSFDVLGVSVFIEAIIFVLILIVGLVYAWRKGALEWS 120
Cdd:CHL00022   81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-120 5.96e-46

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 144.24  E-value: 5.96e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   1 MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:PRK06602    2 TEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLF 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2055416231  81 PWAMSFDVLGVSVFIEAIIFVLILIVGLVYAWRKGALEWS 120
Cdd:PRK06602   82 PWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-119 2.79e-39

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 127.54  E-value: 2.79e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   3 LLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPW 82
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2055416231  83 AMSFDVLGVSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 8.11e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 125.61  E-value: 8.11e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  25 FLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAIIFVLIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 2055416231 105 IVGLVYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-119 1.75e-35

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 117.92  E-value: 1.75e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   7 YDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSF 86
Cdd:PRK07756    9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2055416231  87 DVLGVSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:PRK07756   89 DKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
10-119 5.72e-24

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 88.96  E-value: 5.72e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  10 FWVFLIISsvipILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAwVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL 89
Cdd:PRK08489   21 FVAFFLTT----RLARFISRKLAQKNTEKLKLAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWAVDFKLL 95

                          90       100       110
                  ....*....|....*....|....*....|
gi 2055416231  90 GVSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:PRK08489   96 GLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 12-119 2.18e-22

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 84.72  E-value: 2.18e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  12 VFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWV--QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL 89
Cdd:PRK07928    9 VLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGggRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDAL 88

                          90       100       110
                  ....*....|....*....|....*....|
gi 2055416231  90 GVSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:PRK07928   89 GVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 12-119 2.27e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 68.87  E-value: 2.27e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  12 VFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVL 89
Cdd:MTH00069    4 LMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLNTP 83

                          90       100       110
                  ....*....|....*....|....*....|
gi 2055416231  90 GVSVFIEAIIFVLiLIVGLVYAWRKGALEW 119
Cdd:MTH00069   84 TNTLFWSTLILIL-LTLGLIYEWIQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 9-120 2.96e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 68.73  E-value: 2.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   9 IFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSF-D 87
Cdd:MTH00148    4 ILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLgS 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2055416231  88 VLGVSVFIEAIIFVLILIVGLVYAWRKGALEWS 120
Cdd:MTH00148   84 SFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 14-119 3.44e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 68.37  E-value: 3.44e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  14 LIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLgV 91
Cdd:MTH00113    7 LTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLTTP-T 85

                          90       100
                  ....*....|....*....|....*...
gi 2055416231  92 SVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00113   86 TTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 14-120 5.05e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 68.35  E-value: 5.05e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  14 LIISSVIPILAFLISGVLAPLSKEP-EKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDVLGV 91
Cdd:MTH00012    8 MMISLILPPLVLGAAWVLAARSTADrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVpTILMTSTSK 87

                          90       100
                  ....*....|....*....|....*....
gi 2055416231  92 SVFIEAIIFVLILIVGLVYAWRKGALEWS 120
Cdd:MTH00012   88 TVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 10-119 2.71e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 66.24  E-value: 2.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  10 FWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL 89
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 2055416231  90 GVSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00018   83 APFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 9-119 3.60e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 65.95  E-value: 3.60e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   9 IFWVFLIISSVIPILAFLISGvlaPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDV 88
Cdd:MTH00161    5 ILLIILLISIILMILASLLSK---KSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2055416231  89 LGVSVF-IEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00161   82 SNMMSWlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 6-119 7.23e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 65.50  E-value: 7.23e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   6 EYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMS 85
Cdd:MTH00055    4 EFLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2055416231  86 FDVLGVSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00055   84 YNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 10-119 5.71e-14

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 63.08  E-value: 5.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  10 FWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDV 88
Cdd:MTH00042    4 LIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLpPATLIT 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2055416231  89 LGVSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00042   84 NPSTLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 14-120 1.92e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 61.49  E-value: 1.92e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  14 LIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGV 91
Cdd:MTH00106    7 LLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLNT 86

                          90       100
                  ....*....|....*....|....*....
gi 2055416231  92 SVFIeAIIFVLILIVGLVYAWRKGALEWS 120
Cdd:MTH00106   87 MLTM-ALLLISLLALSLAYEWTQKGLEWT 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 14-119 3.03e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 61.09  E-value: 3.03e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  14 LIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFL--YPWAmsfDVLG- 90
Cdd:MTH00136    8 LTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWG---DQLPs 84

                          90       100       110
                  ....*....|....*....|....*....|
gi 2055416231  91 -VSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00136   85 pLLTFFWATAVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 37-119 6.77e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 60.33  E-value: 6.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  37 EPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAIIFVLILIVGLVYAWRKGA 116
Cdd:MTH00030   40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLIVLAIGLAYEWIKGG 119


                  ...
gi 2055416231 117 LEW 119
Cdd:MTH00030  120 LEW 122
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 14-119 4.13e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 55.38  E-value: 4.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  14 LIISSVIPILAFLISGVLAPLS-KEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMS-FDVLGV 91
Cdd:MTH00202    8 SILSILISSLLFLVSWMLSFRSlMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVlKSSWSK 87

                          90       100
                  ....*....|....*....|....*...
gi 2055416231  92 SVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00202   88 GGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 9-119 1.91e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 53.75  E-value: 1.91e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231   9 IFWVFLIISSVIPILAFLISGvLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDV 88
Cdd:MTH00203    4 IMLFFLIALLLSLILLFIAFW-LPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQL 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2055416231  89 LGVSVFIeAIIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00203   83 SSLSLLL-AFLFLILLTLGLIYEWLQGGLEW 112
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 60-119 6.98e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 52.89  E-value: 6.98e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  60 IRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAIIFVLILIVGLVYAWRKGALEW 119
Cdd:PRK06432   83 NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 15-113 4.60e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 37.28  E-value: 4.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055416231  15 IISSVIPILAFLISGV--------LAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSF 86
Cdd:PRK06073    7 ALAFGLVIVLGLAAGVgtykllklILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAP 86

                          90       100
                  ....*....|....*....|....*..
gi 2055416231  87 DVLGVSVFIEAIIFVLILIVGLVYAWR 113
Cdd:PRK06073   87 YYTFRDLLLLIVVALVLMYPVLYYAYK 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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