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Conserved domains on  [gi|2047445545|ref|YP_010100335|]
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hypothetical protein KNU29_gp132 [Escherichia phage AnYang]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5498 super family cl38862
Family of unknown function (DUF5498); This is a family of unknown function found in Myoviridae.
 1-96 8.45e-34

Family of unknown function (DUF5498); This is a family of unknown function found in Myoviridae.


The actual alignment was detected with superfamily member pfam17602:

Pssm-ID: 340317  Cd Length: 96  Bit Score: 112.13  E-value: 8.45e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047445545  1 MKSAFRFNGQELVVENVIPASEEFDSAVGNELRRVFGEDKQFDIRPVENFSQPEQTENIFNGVVTGQLESEAPISVTVFV 80
Cdd:pfam17602  1 MKSSLRFLGQELVVEGVIPADNAFNEAVYDEFIKIFGTDKKFGIFPSENFSKPEQTESIFQGVVTGKFESEAPVKIEVYI 80

                         90
                 ....*....|....*.
gi 2047445545 81 KKQPLMTAAGFISFRK 96
Cdd:pfam17602 81 EDSLVASVAAFISFRK 96
 
Name Accession Description Interval E-value
DUF5498 pfam17602
Family of unknown function (DUF5498); This is a family of unknown function found in Myoviridae.
 1-96 8.45e-34

Family of unknown function (DUF5498); This is a family of unknown function found in Myoviridae.


Pssm-ID: 340317  Cd Length: 96  Bit Score: 112.13  E-value: 8.45e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047445545  1 MKSAFRFNGQELVVENVIPASEEFDSAVGNELRRVFGEDKQFDIRPVENFSQPEQTENIFNGVVTGQLESEAPISVTVFV 80
Cdd:pfam17602  1 MKSSLRFLGQELVVEGVIPADNAFNEAVYDEFIKIFGTDKKFGIFPSENFSKPEQTESIFQGVVTGKFESEAPVKIEVYI 80

                         90
                 ....*....|....*.
gi 2047445545 81 KKQPLMTAAGFISFRK 96
Cdd:pfam17602 81 EDSLVASVAAFISFRK 96
 
Name Accession Description Interval E-value
DUF5498 pfam17602
Family of unknown function (DUF5498); This is a family of unknown function found in Myoviridae.
 1-96 8.45e-34

Family of unknown function (DUF5498); This is a family of unknown function found in Myoviridae.


Pssm-ID: 340317  Cd Length: 96  Bit Score: 112.13  E-value: 8.45e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047445545  1 MKSAFRFNGQELVVENVIPASEEFDSAVGNELRRVFGEDKQFDIRPVENFSQPEQTENIFNGVVTGQLESEAPISVTVFV 80
Cdd:pfam17602  1 MKSSLRFLGQELVVEGVIPADNAFNEAVYDEFIKIFGTDKKFGIFPSENFSKPEQTESIFQGVVTGKFESEAPVKIEVYI 80

                         90
                 ....*....|....*.
gi 2047445545 81 KKQPLMTAAGFISFRK 96
Cdd:pfam17602 81 EDSLVASVAAFISFRK 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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