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NADH-plastoquinone oxidoreductase subunit 7 (chloroplast) [Hovenia acerba]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 903.68
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 1 M NI PATR N DLM V VNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TV PATR K DLM I VNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 81 ITVN G PE L LGNIQVPKRASYIR I IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVN A PE Q LGNIQVPKRASYIR V IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 161 GGVAADLP H GWIDKCLDFCDYFLTG I AEYQKLITRNPIFLERVEGVGIIG T EE V INWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDYFLTG V AEYQKLITRNPIFLERVEGVGIIG G EE A INWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE I R Y FDREK NPQ WNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE A R R FDREK DSE WNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1980530419 321 L P KQELYVRVEAPKGELGIFLIGD QGG FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 L S KQELYVRVEAPKGELGIFLIGD DSV FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 903.68
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 1 M NI PATR N DLM V VNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TV PATR K DLM I VNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 81 ITVN G PE L LGNIQVPKRASYIR I IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVN A PE Q LGNIQVPKRASYIR V IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 161 GGVAADLP H GWIDKCLDFCDYFLTG I AEYQKLITRNPIFLERVEGVGIIG T EE V INWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDYFLTG V AEYQKLITRNPIFLERVEGVGIIG G EE A INWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE I R Y FDREK NPQ WNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE A R R FDREK DSE WNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1980530419 321 L P KQELYVRVEAPKGELGIFLIGD QGG FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 L S KQELYVRVEAPKGELGIFLIGD DSV FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
9-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 589.73
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 9 DL MV V NMGP H HPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP E L 88
Cdd:COG0649 5 EE MV L NMGP Q HPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV E K 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 89 L GN I Q VP K RA S YIR I I ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA DLP 168
Cdd:COG0649 85 L LG I E VP E RA Q YIR V I LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 169 H G WID K CLD F C DYF LTGIA EY QK L I T R N P IF LE R VE GVG IIGT E EV I NW G LS GP M LRASG IQW DLRK VDH Y EC YDE F D WE 248
Cdd:COG0649 165 D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VLSA E DA I AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 249 V QWQK EGD SLA RYLVR IG EM TE S IK II Q Q A L EGI P G GP YENLEIRYFDRE K NPQWNDF E YRFIS - K KPSPT F EL P KQ E L Y 327
Cdd:COG0649 245 V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KV P AG E V Y 324
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1980530419 328 VR VE A P K GELG IF L IG D Q G GF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 325 AA VE S P R GELG FY L VS D G G TK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
3.50e-159
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 452.57
E-value: 3.50e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 9 DL M VV N M GP H HPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E L 88
Cdd:TIGR01962 1 EF M IL N L GP Q HPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 89 L GN I Q VP K RA SY IR IIML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IR VMLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 169 HG W IDKCLD F CDY F LTGIAE Y QK L ITR N P I FLE R VE GVG IIGTEEVIN WGL S GPMLR A SGI Q WD L RK VDH YE C YDE F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG VVSAKDALD WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 249 V QWQKE GD SLA RYL V R IG EM T ESIKII Q Q A LE GI P G GP Y -- E N LEIRYFDR E KNPQWN dfe YRF I S -- K KPSPT F EL P KQ 324
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I ka D N PKLAPPPK E RMLTSM --- EAL I H hf K LVTEG F RV P AG 317
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1980530419 325 E L YV RV E A PKGELG IFL I G D Q G GF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 318 E V YV PI E S PKGELG FYI I S D G G TK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
4.07e-147
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 417.56
E-value: 4.07e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP H G WID K CLD F C DYF LTGIA EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 205 GVG IIGT E EVINW G LS GPMLRASG IQ WDLRK VDH Y EC YDE F D WE V QWQK EGD SLA RYLVR IG EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSA E DALAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 285 GP Y -- ENLE I RYFDR E KNPQ - WNDFEYR F is K KPSPT F EL P KQ E L YV R VEAPKGELG IF L IG D Q G GF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPK E EMKT s MEALIHH F -- K LVTEG F RV P AG E V YV A VEAPKGELG FY L VS D G G TK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 1980530419 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 903.68
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 1 M NI PATR N DLM V VNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TV PATR K DLM I VNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 81 ITVN G PE L LGNIQVPKRASYIR I IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVN A PE Q LGNIQVPKRASYIR V IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 161 GGVAADLP H GWIDKCLDFCDYFLTG I AEYQKLITRNPIFLERVEGVGIIG T EE V INWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDYFLTG V AEYQKLITRNPIFLERVEGVGIIG G EE A INWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE I R Y FDREK NPQ WNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE A R R FDREK DSE WNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1980530419 321 L P KQELYVRVEAPKGELGIFLIGD QGG FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 L S KQELYVRVEAPKGELGIFLIGD DSV FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
6-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 731.54
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 6 TR NDL MV V N M GPHHPSMHGVLRLIVTLDGEDV I DCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EAITVN G 85
Cdd:PRK07415 6 TR TEP MV L N F GPHHPSMHGVLRLIVTLDGEDV V DCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EAITVN A 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 86 PE L L G NI Q VPKRASYIR I IMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE L IYDL F EAATG M R MM - H NYFRIGGVA 164
Cdd:PRK07415 86 PE K L A NI P VPKRASYIR V IMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N NYFRIGGVA 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 165 ADLP H GW ID KCLDFCDYF LTG I A EY Q KLIT R NPIF LE R V EG V G I I GT EE V INWGLSGPMLRASG IQ WDLRKVDHYECYD E 244
Cdd:PRK07415 166 ADLP Y GW LE KCLDFCDYF GPK I D EY E KLIT N NPIF RR R I EG L G T I SR EE A INWGLSGPMLRASG VK WDLRKVDHYECYD D 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 245 FDW E V Q W QK EGD S LARY L VRI G EM T ES I KII Q QA LE GIPGGPYENLE IRYFDRE K NPQ WN D F E Y RFIS KK PS PTF EL P KQ 324
Cdd:PRK07415 246 FDW D V A W ET EGD C LARY R VRI E EM R ES V KII R QA CK GIPGGPYENLE AKRMAEG K KSE WN G F D Y QYVA KK VA PTF KI P NG 325
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1980530419 325 ELYVR V E AP KGELGIF LI G DQGGF PWRWKIR PPG F I NLQILP Q L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 326 ELYVR L E SG KGELGIF IQ G NNDVT PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
9-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 589.73
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 9 DL MV V NMGP H HPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP E L 88
Cdd:COG0649 5 EE MV L NMGP Q HPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV E K 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 89 L GN I Q VP K RA S YIR I I ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA DLP 168
Cdd:COG0649 85 L LG I E VP E RA Q YIR V I LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 169 H G WID K CLD F C DYF LTGIA EY QK L I T R N P IF LE R VE GVG IIGT E EV I NW G LS GP M LRASG IQW DLRK VDH Y EC YDE F D WE 248
Cdd:COG0649 165 D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VLSA E DA I AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 249 V QWQK EGD SLA RYLVR IG EM TE S IK II Q Q A L EGI P G GP YENLEIRYFDRE K NPQWNDF E YRFIS - K KPSPT F EL P KQ E L Y 327
Cdd:COG0649 245 V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KV P AG E V Y 324
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1980530419 328 VR VE A P K GELG IF L IG D Q G GF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 325 AA VE S P R GELG FY L VS D G G TK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
9-393
2.76e-174
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 491.21
E-value: 2.76e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 9 DLMVV N M GP H HP SM HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITVNGP E L 88
Cdd:PRK06075 5 RNYTL N F GP Q HP AA HGVLRLI LE LDGE V V VRAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCLAV E K 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 89 L GN I Q VP K RA S YIR IIM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LIY DL F EA A TG M RM M H N Y F R I GGV AA DLP 168
Cdd:PRK06075 85 L LG I E VP E RA Q YIR VLF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H A Y I R P GGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 169 H G WIDKCL DF C DYF LTGIAE Y QK L I T R N P I FLE R VE GVG IIGT E EVINW G LS GPMLRASG IQ WDLRK VDH YE C YDE F D WE 248
Cdd:PRK06075 165 D G LLEDIR DF L DYF PKRLDD Y ET L L T D N R I WKQ R LV GVG VVSK E RALAL G FT GPMLRASG VA WDLRK SQP YE V YDE L D FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 249 V QWQ K E GD SLA RYLVR IG EM TE S IK II Q Q A L E -- GI P G GP Y -- ENLE I RYFD R EKNPQWND f EYRFIS K KPSPT F EL P KQ 324
Cdd:PRK06075 245 V PVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP V mv DDPK I APPA R LEMKTSME - ALIHHF K LVTEG F RV P AG 323
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1980530419 325 E L Y VR VE A PKGE L G IF L IG D Q G GF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 324 E V Y AA VE S PKGE F G VY L VS D G G NK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
6-393
9.54e-161
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 456.09
E-value: 9.54e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 6 T R NDL M VV N M GP H HPS M HGV L RL IVTL DGE DVIDCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITVNG 85
Cdd:PRK12322 2 L R TEE M LL N V GP Q HPS T HGV F RL VLKI DGE IIVEAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCHA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 86 P E LLGNIQ VP K RA S Y I R I I ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE L I YD L FEAAT G M R MMH NY F RIGGV AA 165
Cdd:PRK12322 82 V E TMMGLE VP E RA E Y L R V I AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE M I IN L LNELC G A R LTF NY M RIGGV KW 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 166 D L P H GWI D K CLD F CD Y FLTGI A E Y QK L I T R N P IFL E RV E GVGI IGT EE V I NWG LSG PM LR AS G IQ WDLRK VDH Y EC YD E F 245
Cdd:PRK12322 162 D A P D GWI E K VKE F VP Y MREQL A G Y HD L V T G N E IFL N RV K GVGI YSA EE A I SYS LSG VN LR CT G VN WDLRK DEP Y SI YD R F 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 246 D WEVQWQKE GD SLA RY LV R IG E MTE S I KII Q QA L E GI P - G GP yenleiryfdreknpqwndfeyrf ISK K PSPTFEL PK Q 324
Cdd:PRK12322 242 D FDIPVGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKA PK G 297
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1980530419 325 E L YVR V E A P K GE L G IFLIG D QGGF P W R W K I R P P G F I NLQILP Q L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 298 E A YVR I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
3.50e-159
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 452.57
E-value: 3.50e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 9 DL M VV N M GP H HPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E L 88
Cdd:TIGR01962 1 EF M IL N L GP Q HPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 89 L GN I Q VP K RA SY IR IIML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IR VMLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 169 HG W IDKCLD F CDY F LTGIAE Y QK L ITR N P I FLE R VE GVG IIGTEEVIN WGL S GPMLR A SGI Q WD L RK VDH YE C YDE F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG VVSAKDALD WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 249 V QWQKE GD SLA RYL V R IG EM T ESIKII Q Q A LE GI P G GP Y -- E N LEIRYFDR E KNPQWN dfe YRF I S -- K KPSPT F EL P KQ 324
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I ka D N PKLAPPPK E RMLTSM --- EAL I H hf K LVTEG F RV P AG 317
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1980530419 325 E L YV RV E A PKGELG IFL I G D Q G GF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 318 E V YV PI E S PKGELG FYI I S D G G TK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
4.07e-147
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 417.56
E-value: 4.07e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP H G WID K CLD F C DYF LTGIA EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 205 GVG IIGT E EVINW G LS GPMLRASG IQ WDLRK VDH Y EC YDE F D WE V QWQK EGD SLA RYLVR IG EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSA E DALAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 285 GP Y -- ENLE I RYFDR E KNPQ - WNDFEYR F is K KPSPT F EL P KQ E L YV R VEAPKGELG IF L IG D Q G GF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPK E EMKT s MEALIHH F -- K LVTEG F RV P AG E V YV A VEAPKGELG FY L VS D G G TK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 1980530419 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
3.66e-137
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 410.32
E-value: 3.66e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 8 NDLMVV N M GP H HP SM HG VL R LIVT LDGE DVI D CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAIT VN GP E 87
Cdd:PRK13292 402 EETLIL N L GP Q HP GT HG II R FVLK LDGE EIV D MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 88 L L GN I Q VP K RA S YIR IIML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNY FRIGGVA A DL 167
Cdd:PRK13292 482 T L CG I E VP D RA I YIR VMLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGGVA E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 168 P H GW IDKCLD F CDY F LTGIA EY QK L I T R NPIF LE R VE GVG I I GTE E VIN WG L SGP M LRA S G IQ WDLRK VDH Y EC YD E FD W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PGRLK EY ED L L T G NPIF KA R LK GVG V I TRD E AVE WG I SGP N LRA C G LA WDLRK KMP Y GG YD R FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 248 EV QWQKE GD SL ARYLVR IG EM TE S IK I IQ QA LE G I PGG PYENLEI RY FDRE K NPQWN D F E --- YR F ISKKPS P T fe L PK Q 324
Cdd:PRK13292 642 EV PTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY RY VLPQ K RDTLK D I E sli HH F VNVTRG P A -- P PK G 719
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1980530419 325 E L Y VRV EAPKGE L G I F LIG D QGGFPW R WK IR P P G F INL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 720 E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
8-393
4.18e-121
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 362.32
E-value: 4.18e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 8 N D L M VV N M GP H HPS M HG VL R LIVT LDGE DVI DC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AIT V NGP E 87
Cdd:PRK11742 189 E D F M FL N L GP N HPS A HG AF R IVLQ LDGE EIV DC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPY V LAV E 268
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 88 L L GN I Q VP K R ASY IR IIML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNY FRIGGVA A DL 167
Cdd:PRK11742 269 K L AG I T VP D R VNV IR VMLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGGVA H DL 348
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 168 P H GW i D KC L - D F C D YFLTGIA EY Q K LIT RN P I FLE R VE GV GIIGTE E VIN WG LS G PM LRA S GI QW D L RK VDH Y EC Y DE FD 246
Cdd:PRK11742 349 P R GW - D RL L r E F L D WMPKRLD EY E K AAL RN S I LKG R TQ GV AAYNAK E ALE WG VT G AG LRA T GI DF D V RK ARP Y SG Y EN FD 427
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 247 W EV QWQKE GD SLA R YL V RIG EM TE S IK II Q Q A L EGI P G GP YEN leiryf D -------- R E KNP Q wn DF E --- YR F ISKKP 315
Cdd:PRK11742 428 F EV PVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP FKA ------ D hplttppp K E RTL Q -- HI E tli TH F LQVSW 499
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1980530419 316 S P T fe L P KQ E LYVRV EA P KG ELGIF L IG D QGGFPW R WK IR P P G F IN LQ IL P QLVKRMKLA D IMTI LGSID II M GE VDR 393
Cdd:PRK11742 500 G P V -- M P AN E SFQMI EA T KG INSYY L TS D GSTMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
10-385
4.94e-100
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 305.36
E-value: 4.94e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 10 LMVVNM GP H H PSMHGVLRLIVTLD GE DVI D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD Y latmf TE 79
Cdd:COG3261 122 VHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- CQ 196
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 80 A I tvngp E LLGN I Q VP K RA S Y I R I I M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNYFR 159
Cdd:COG3261 197 A V ----- E KAAG I E VP P RA Q Y L R V I L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGINV 271
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 160 I GGV AA DL PHGWIDKC L DFC D YFLTGIA E YQK L ITRN P IF L E R VE G V G IIGT E EVINW G LS GP ML RASG IQW D L R KVDH Y 239
Cdd:COG3261 272 P GGV RR DL DPEQLKAI L ERL D ELEEEVK E LVD L FLND P SV L D R LV G T G VLSK E DARDL G AV GP VA RASG VDR D V R RDHP Y 351
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980530419 240 EC YDE F D WE V QWQK EGD SL AR Y LVR IG E MT ES IKI I Q QALE GI P G GP yenleiryfdreknpqwndfeyrf I SKKPSPTF 319
Cdd:COG3261 352 AA YDE L D FK V VTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP ------------------------ I RVPVPGLP 407
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1980530419 320 el P KQ E LYV RVEAP K GEL GIFLIG D QG G FPW R W KIR P P G F I N LQI L PQLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 408 -- P DG E GLG RVEAP R GEL VHYVRT D GD G RLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
