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Conserved domains on  [gi|1869246709|ref|YP_009891315|]
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Ycf1.2 (chloroplast) [Alyssopsis mollis]

Protein Classification

TIC214/Ycf1 family protein( domain architecture ID 11414143)

TIC214/ycf1 family protein is a component of the chloroplast inner membrane protein translocon and forms a 1-MD complex together with Tic100, Tic56, and Tic20-I

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 9-1124 0e+00

Ycf1; Provisional


:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1943.36  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709    9 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHLAL 88
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709   89 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 168
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  169 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYkfLVSELRNSMARIFSILLFITCVYYLGRIPSPIF 248
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKY--LVSELRNSMARIFSILLFITCVYYLGRIPSPIF 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  249 TKKLKGTSET--------------------GGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKDKINKDdef 308
Cdd:CHL00204   239 TKKLKETSETeerveseeetdveietasetKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEIRVNGKEKIKKD--- 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  309 hvrtyynyktvsenldgnkensnleffkikkkedhFLWFEKPFVTLVFDYKRWNRPNRYIKNDKIENTVRNEMSQYFFYT 388
Cdd:CHL00204   316 -----------------------------------LFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYT 360

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  389 CQSDGKERISFTYPPNLSTFFEMIQKRIPSFTREKTPSDQVSTYWSLIHEEKKENLKKAFLNRIEALDKEWSVENILEKT 468
Cdd:CHL00204   361 CQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKR 440

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  469 TRFCYNEAKKEYLPKIYDPFLHGVSRGKIKKLPPFQIITKTYRKNNIGRSWINKIHGILM-KINYHKFEQTIEKFNRKSL 547
Cdd:CHL00204   441 TRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIINETSIKNNIEGVWINKIHGILLnNTDYQEFEQKIDTFNKKSL 520

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  548 SIE---------------------KKLSFFSEPQQeEKIHSEEEIKIFKFLFDIVRTDSNDQTLIKNFSDFHEIKKKVPR 606
Cdd:CHL00204   521 STEinesltlinkfgaepksslnlKGLSLFSEPEQ-EKINSEEEIKIFKFLFDAVITDPNDQTIIKKSIGIKEISKKVPR 599

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  607 WSYKLISELEELEGENEENVPMEPGIRSRKAKRVVVFTDKEPHDEIYTNLKDNQNSDQKDEMALIRYSQQSDFRREIIKG 686
Cdd:CHL00204   600 WSYKLIDELEQLEGENEENVPSDHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKG 679

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  687 SMRSQRRKTVIWDFFQAKVHSPLFFDRIDKLFFFSFDIWGLKKKILRNFMWKNKKKIFDKK--------------EEEQS 752
Cdd:CHL00204   680 SMRAQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSveektkkkkkkekkKEEEY 759

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  753 KIEEKRRIEIAETWDSFLFAQIIRGSLLVIQSILRKYIILPLLIIIKNSVRMLLFQFPEWSEDLKDWKREMHVKCTYNGV 832
Cdd:CHL00204   760 KREEKARIEIAEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGV 839

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  833 QLSETEFPRNWLTDGIQIKILFPFYLKPWHKSKFQASQKARLKKttDKREKNDFCFLTVWGTETELPFGSAQKKPSFFEP 912
Cdd:CHL00204   840 QLSETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRSSHKDRMKK--KKKKKNDFCFLTVWGMETELPFGSPRKRPSFFEP 917

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  913 IFKELKKRIKKLKTKSFLVLSIFKERATIFLKVAKEIKNWILKNFLFIKGKIKDLSKRNKIPVFDSREIYELNVNQTKKD 992
Cdd:CHL00204   918 IFKELKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNPILLFGLREIYELNETKKEKD 997

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  993 SIISNQMINELSVQKKSMEWTNSSLSENKIKNLIDRIKTIRNQIEEISKEKQNLTN----SCTKLRYYSKIIESSKKIWQ 1068
Cdd:CHL00204   998 SIISNQMIHESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITNtiniSPNKTSYDSKIIESSKKIWQ 1077

                         1130      1140      1150      1160      1170
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1869246709 1069 TFKRKNTRLIRKSIFFFKFCIEQLSRAFFLGIINIPRTTIQLFFESTKTIIDKYIY 1124
Cdd:CHL00204  1078 ILKRRNTRLIRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIY 1133
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 9-1124 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1943.36  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709    9 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHLAL 88
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709   89 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 168
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  169 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYkfLVSELRNSMARIFSILLFITCVYYLGRIPSPIF 248
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKY--LVSELRNSMARIFSILLFITCVYYLGRIPSPIF 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  249 TKKLKGTSET--------------------GGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKDKINKDdef 308
Cdd:CHL00204   239 TKKLKETSETeerveseeetdveietasetKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEIRVNGKEKIKKD--- 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  309 hvrtyynyktvsenldgnkensnleffkikkkedhFLWFEKPFVTLVFDYKRWNRPNRYIKNDKIENTVRNEMSQYFFYT 388
Cdd:CHL00204   316 -----------------------------------LFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYT 360

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  389 CQSDGKERISFTYPPNLSTFFEMIQKRIPSFTREKTPSDQVSTYWSLIHEEKKENLKKAFLNRIEALDKEWSVENILEKT 468
Cdd:CHL00204   361 CQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKR 440

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  469 TRFCYNEAKKEYLPKIYDPFLHGVSRGKIKKLPPFQIITKTYRKNNIGRSWINKIHGILM-KINYHKFEQTIEKFNRKSL 547
Cdd:CHL00204   441 TRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIINETSIKNNIEGVWINKIHGILLnNTDYQEFEQKIDTFNKKSL 520

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  548 SIE---------------------KKLSFFSEPQQeEKIHSEEEIKIFKFLFDIVRTDSNDQTLIKNFSDFHEIKKKVPR 606
Cdd:CHL00204   521 STEinesltlinkfgaepksslnlKGLSLFSEPEQ-EKINSEEEIKIFKFLFDAVITDPNDQTIIKKSIGIKEISKKVPR 599

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  607 WSYKLISELEELEGENEENVPMEPGIRSRKAKRVVVFTDKEPHDEIYTNLKDNQNSDQKDEMALIRYSQQSDFRREIIKG 686
Cdd:CHL00204   600 WSYKLIDELEQLEGENEENVPSDHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKG 679

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  687 SMRSQRRKTVIWDFFQAKVHSPLFFDRIDKLFFFSFDIWGLKKKILRNFMWKNKKKIFDKK--------------EEEQS 752
Cdd:CHL00204   680 SMRAQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSveektkkkkkkekkKEEEY 759

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  753 KIEEKRRIEIAETWDSFLFAQIIRGSLLVIQSILRKYIILPLLIIIKNSVRMLLFQFPEWSEDLKDWKREMHVKCTYNGV 832
Cdd:CHL00204   760 KREEKARIEIAEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGV 839

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  833 QLSETEFPRNWLTDGIQIKILFPFYLKPWHKSKFQASQKARLKKttDKREKNDFCFLTVWGTETELPFGSAQKKPSFFEP 912
Cdd:CHL00204   840 QLSETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRSSHKDRMKK--KKKKKNDFCFLTVWGMETELPFGSPRKRPSFFEP 917

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  913 IFKELKKRIKKLKTKSFLVLSIFKERATIFLKVAKEIKNWILKNFLFIKGKIKDLSKRNKIPVFDSREIYELNVNQTKKD 992
Cdd:CHL00204   918 IFKELKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNPILLFGLREIYELNETKKEKD 997

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  993 SIISNQMINELSVQKKSMEWTNSSLSENKIKNLIDRIKTIRNQIEEISKEKQNLTN----SCTKLRYYSKIIESSKKIWQ 1068
Cdd:CHL00204   998 SIISNQMIHESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITNtiniSPNKTSYDSKIIESSKKIWQ 1077

                         1130      1140      1150      1160      1170
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1869246709 1069 TFKRKNTRLIRKSIFFFKFCIEQLSRAFFLGIINIPRTTIQLFFESTKTIIDKYIY 1124
Cdd:CHL00204  1078 ILKRRNTRLIRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIY 1133
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 23-914 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1485.93  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709   23 VVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYL 102
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  103 LFHFFWNNHKHFFDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 182
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  183 ILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYkfLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKGTSET---- 258
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRSNVLIRSNKY--LVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKETSETeery 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  259 ----------------GGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKDKINKDDEFHVRTY-------YN 315
Cdd:pfam05758  239 eseeetdveiettsetKGTKQEQERSTEEDPSPSLFSEEGEDLDKIDETEEIRVNGKDKIKDEFHFHFRETcyknspiYE 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  316 YKTvsenLDGNKENSNLEFFKIKKKEDHFLWFEKPFVTLVFDYKRWNRPNRYIKNDKIENTVRNEMSQYFFYTCQSDGKE 395
Cdd:pfam05758  319 TSY----LDGNQENSKLEILKEKKKNKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKE 394

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  396 RISFTYPPNLSTFFEMIQKRIPSFTREKTPSDQVSTYWSLIHEEKKENLKKAFLNRIEALDKEWSVENILEKTTRFCYNE 475
Cdd:pfam05758  395 RISFTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDE 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  476 AKKEYLPKIYDPFLHGVSRGKIKKLPPFQIITKTYRKNNIGRSWINKIHGILMKINYHKFEQTIEKFNRKSLSIE----- 550
Cdd:pfam05758  475 TKKEYLPKIYDPFLNGPYRGRIKKVFSPSIINKTSRKNSLEGVWINKIHGILLSSNYPEFEQKINIFDRKSLSTEidyfl 554

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  551 ----------------KKLSFFSEpQQEEKIHSEEEIKIFKFLFDIVRTDSNDQTLIKNFSDFHEIKKKVPRWSYKLISE 614
Cdd:pfam05758  555 nlinefskksvsslnfKGLSLFPE-QEQVKINSEEEKKILKFLFDAVRTDSNEKTIRKKSIGIKEINKKVPRWSYKLIDE 633

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  615 LEELEGENEENVPMEPGIRSRKAKRVVVFTDKEPHDEIYTNLKDNQNSDQKDEMALIRYSQQSDFRREIIKGSMRSQRRK 694
Cdd:pfam05758  634 LEQLEGENEENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRK 713

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  695 TVIWDFFQAKVHSPLFFDRIDKLFFFSFDIWGLKKKILRNFMW--------------KNKKKIFDKKEEEQSKIEEKRRI 760
Cdd:pfam05758  714 TVIWELFQANVHSPLFLDRIDKPLFFSFDIFGLIKIIFKNWMRkkeefkissyteekTKESSKKEEDKKEDNKREERARI 793

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  761 EIAETWDSFLFAQIIRGSLLVIQSILRKYIILPLLIIIKNSVRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFP 840
Cdd:pfam05758  794 EIAEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFP 873

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1869246709  841 RNWLTDGIQIKILFPFYLKPWHKSKFQASQKARLKKttdKREKNDFCFLTVWGTETELPFGSAQKKPSFFEPIF 914
Cdd:pfam05758  874 KNWLTDGIQIKILFPFRLKPWHKSKLRSSEKDLMKK---KVQKNDFCFLTVWGMETELPFGSPRKRPSFFEPIF 944
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 9-1124 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1943.36  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709    9 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHLAL 88
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709   89 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 168
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  169 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYkfLVSELRNSMARIFSILLFITCVYYLGRIPSPIF 248
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKY--LVSELRNSMARIFSILLFITCVYYLGRIPSPIF 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  249 TKKLKGTSET--------------------GGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKDKINKDdef 308
Cdd:CHL00204   239 TKKLKETSETeerveseeetdveietasetKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEIRVNGKEKIKKD--- 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  309 hvrtyynyktvsenldgnkensnleffkikkkedhFLWFEKPFVTLVFDYKRWNRPNRYIKNDKIENTVRNEMSQYFFYT 388
Cdd:CHL00204   316 -----------------------------------LFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYT 360

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  389 CQSDGKERISFTYPPNLSTFFEMIQKRIPSFTREKTPSDQVSTYWSLIHEEKKENLKKAFLNRIEALDKEWSVENILEKT 468
Cdd:CHL00204   361 CQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKR 440

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  469 TRFCYNEAKKEYLPKIYDPFLHGVSRGKIKKLPPFQIITKTYRKNNIGRSWINKIHGILM-KINYHKFEQTIEKFNRKSL 547
Cdd:CHL00204   441 TRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIINETSIKNNIEGVWINKIHGILLnNTDYQEFEQKIDTFNKKSL 520

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  548 SIE---------------------KKLSFFSEPQQeEKIHSEEEIKIFKFLFDIVRTDSNDQTLIKNFSDFHEIKKKVPR 606
Cdd:CHL00204   521 STEinesltlinkfgaepksslnlKGLSLFSEPEQ-EKINSEEEIKIFKFLFDAVITDPNDQTIIKKSIGIKEISKKVPR 599

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  607 WSYKLISELEELEGENEENVPMEPGIRSRKAKRVVVFTDKEPHDEIYTNLKDNQNSDQKDEMALIRYSQQSDFRREIIKG 686
Cdd:CHL00204   600 WSYKLIDELEQLEGENEENVPSDHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKG 679

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  687 SMRSQRRKTVIWDFFQAKVHSPLFFDRIDKLFFFSFDIWGLKKKILRNFMWKNKKKIFDKK--------------EEEQS 752
Cdd:CHL00204   680 SMRAQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSveektkkkkkkekkKEEEY 759

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  753 KIEEKRRIEIAETWDSFLFAQIIRGSLLVIQSILRKYIILPLLIIIKNSVRMLLFQFPEWSEDLKDWKREMHVKCTYNGV 832
Cdd:CHL00204   760 KREEKARIEIAEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGV 839

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  833 QLSETEFPRNWLTDGIQIKILFPFYLKPWHKSKFQASQKARLKKttDKREKNDFCFLTVWGTETELPFGSAQKKPSFFEP 912
Cdd:CHL00204   840 QLSETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRSSHKDRMKK--KKKKKNDFCFLTVWGMETELPFGSPRKRPSFFEP 917

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  913 IFKELKKRIKKLKTKSFLVLSIFKERATIFLKVAKEIKNWILKNFLFIKGKIKDLSKRNKIPVFDSREIYELNVNQTKKD 992
Cdd:CHL00204   918 IFKELKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNPILLFGLREIYELNETKKEKD 997

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  993 SIISNQMINELSVQKKSMEWTNSSLSENKIKNLIDRIKTIRNQIEEISKEKQNLTN----SCTKLRYYSKIIESSKKIWQ 1068
Cdd:CHL00204   998 SIISNQMIHESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITNtiniSPNKTSYDSKIIESSKKIWQ 1077

                         1130      1140      1150      1160      1170
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1869246709 1069 TFKRKNTRLIRKSIFFFKFCIEQLSRAFFLGIINIPRTTIQLFFESTKTIIDKYIY 1124
Cdd:CHL00204  1078 ILKRRNTRLIRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIY 1133
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 23-914 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1485.93  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709   23 VVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYL 102
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  103 LFHFFWNNHKHFFDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 182
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  183 ILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYkfLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKGTSET---- 258
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRSNVLIRSNKY--LVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKETSETeery 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  259 ----------------GGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKDKINKDDEFHVRTY-------YN 315
Cdd:pfam05758  239 eseeetdveiettsetKGTKQEQERSTEEDPSPSLFSEEGEDLDKIDETEEIRVNGKDKIKDEFHFHFRETcyknspiYE 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  316 YKTvsenLDGNKENSNLEFFKIKKKEDHFLWFEKPFVTLVFDYKRWNRPNRYIKNDKIENTVRNEMSQYFFYTCQSDGKE 395
Cdd:pfam05758  319 TSY----LDGNQENSKLEILKEKKKNKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKE 394

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  396 RISFTYPPNLSTFFEMIQKRIPSFTREKTPSDQVSTYWSLIHEEKKENLKKAFLNRIEALDKEWSVENILEKTTRFCYNE 475
Cdd:pfam05758  395 RISFTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDE 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  476 AKKEYLPKIYDPFLHGVSRGKIKKLPPFQIITKTYRKNNIGRSWINKIHGILMKINYHKFEQTIEKFNRKSLSIE----- 550
Cdd:pfam05758  475 TKKEYLPKIYDPFLNGPYRGRIKKVFSPSIINKTSRKNSLEGVWINKIHGILLSSNYPEFEQKINIFDRKSLSTEidyfl 554

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  551 ----------------KKLSFFSEpQQEEKIHSEEEIKIFKFLFDIVRTDSNDQTLIKNFSDFHEIKKKVPRWSYKLISE 614
Cdd:pfam05758  555 nlinefskksvsslnfKGLSLFPE-QEQVKINSEEEKKILKFLFDAVRTDSNEKTIRKKSIGIKEINKKVPRWSYKLIDE 633

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  615 LEELEGENEENVPMEPGIRSRKAKRVVVFTDKEPHDEIYTNLKDNQNSDQKDEMALIRYSQQSDFRREIIKGSMRSQRRK 694
Cdd:pfam05758  634 LEQLEGENEENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRK 713

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  695 TVIWDFFQAKVHSPLFFDRIDKLFFFSFDIWGLKKKILRNFMW--------------KNKKKIFDKKEEEQSKIEEKRRI 760
Cdd:pfam05758  714 TVIWELFQANVHSPLFLDRIDKPLFFSFDIFGLIKIIFKNWMRkkeefkissyteekTKESSKKEEDKKEDNKREERARI 793

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1869246709  761 EIAETWDSFLFAQIIRGSLLVIQSILRKYIILPLLIIIKNSVRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFP 840
Cdd:pfam05758  794 EIAEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFP 873

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1869246709  841 RNWLTDGIQIKILFPFYLKPWHKSKFQASQKARLKKttdKREKNDFCFLTVWGTETELPFGSAQKKPSFFEPIF 914
Cdd:pfam05758  874 KNWLTDGIQIKILFPFRLKPWHKSKLRSSEKDLMKK---KVQKNDFCFLTVWGMETELPFGSPRKRPSFFEPIF 944
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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