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Conserved domains on  [gi|1842032935|ref|YP_009819874|]
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hypothetical protein HOV11_gp49 [Streptomyces phage Vash]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
138-210 2.45e-04

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14960:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 702  Bit Score: 41.96  E-value: 2.45e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1842032935 138 AQAEAVSAPETDPEPTDGLADweraildapPVWERTEPVQDELPKPEDAPEfnaPDPEP-ADVEPVPERLPNKE 210
Cdd:PRK14960  386 AQTAQEITPVSAVQPVEVISQ---------PAMVEPEPEPEPEPEPEPEPE---PEPEPePEPEPEPEPQPNQD 447
 
Name Accession Description Interval E-value
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
138-210 2.45e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 41.96  E-value: 2.45e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1842032935 138 AQAEAVSAPETDPEPTDGLADweraildapPVWERTEPVQDELPKPEDAPEfnaPDPEP-ADVEPVPERLPNKE 210
Cdd:PRK14960  386 AQTAQEITPVSAVQPVEVISQ---------PAMVEPEPEPEPEPEPEPEPE---PEPEPePEPEPEPEPQPNQD 447
 
Name Accession Description Interval E-value
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
138-210 2.45e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 41.96  E-value: 2.45e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1842032935 138 AQAEAVSAPETDPEPTDGLADweraildapPVWERTEPVQDELPKPEDAPEfnaPDPEP-ADVEPVPERLPNKE 210
Cdd:PRK14960  386 AQTAQEITPVSAVQPVEVISQ---------PAMVEPEPEPEPEPEPEPEPE---PEPEPePEPEPEPEPQPNQD 447
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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