NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1755167308|ref|YP_009702909|]
View 

MGF 110-13L [African swine fever virus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
v110 super family cl03291
Viral family 110; This family of viral proteins is known as the 110 family. The function of ...
 73-156 2.22e-30

Viral family 110; This family of viral proteins is known as the 110 family. The function of members of this family is unknown. The family contains a central cysteine rich region with eight conserved cysteines. Some members of the family contains two copies of the cysteine rich region.


The actual alignment was detected with superfamily member pfam01639:

Pssm-ID: 279910  Cd Length: 102  Bit Score: 105.72  E-value: 2.22e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755167308  73 LPRTYTPPMRELEYWCTYGKHCDFCWTCKNGICKNKVLDDMPLIVQNDYISKCSITRFIDRCMYFIEPKIPY-IHYMNCT 151
Cdd:pfam01639  16 LRITSIPPEEELEYWCTYMESCNFCWDCQDGICKNKAFKNHPPIGENDYIRDCWVSRWPNKCSYYIEKIYYHnTHIMECS 95


                  ....*
gi 1755167308 152 LPTYF 156
Cdd:pfam01639  96 QPTHH 100
 
Name Accession Description Interval E-value
v110 pfam01639
Viral family 110; This family of viral proteins is known as the 110 family. The function of ...
 73-156 2.22e-30

Viral family 110; This family of viral proteins is known as the 110 family. The function of members of this family is unknown. The family contains a central cysteine rich region with eight conserved cysteines. Some members of the family contains two copies of the cysteine rich region.


Pssm-ID: 279910  Cd Length: 102  Bit Score: 105.72  E-value: 2.22e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755167308  73 LPRTYTPPMRELEYWCTYGKHCDFCWTCKNGICKNKVLDDMPLIVQNDYISKCSITRFIDRCMYFIEPKIPY-IHYMNCT 151
Cdd:pfam01639  16 LRITSIPPEEELEYWCTYMESCNFCWDCQDGICKNKAFKNHPPIGENDYIRDCWVSRWPNKCSYYIEKIYYHnTHIMECS 95


                  ....*
gi 1755167308 152 LPTYF 156
Cdd:pfam01639  96 QPTHH 100
 
Name Accession Description Interval E-value
v110 pfam01639
Viral family 110; This family of viral proteins is known as the 110 family. The function of ...
 73-156 2.22e-30

Viral family 110; This family of viral proteins is known as the 110 family. The function of members of this family is unknown. The family contains a central cysteine rich region with eight conserved cysteines. Some members of the family contains two copies of the cysteine rich region.


Pssm-ID: 279910  Cd Length: 102  Bit Score: 105.72  E-value: 2.22e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755167308  73 LPRTYTPPMRELEYWCTYGKHCDFCWTCKNGICKNKVLDDMPLIVQNDYISKCSITRFIDRCMYFIEPKIPY-IHYMNCT 151
Cdd:pfam01639  16 LRITSIPPEEELEYWCTYMESCNFCWDCQDGICKNKAFKNHPPIGENDYIRDCWVSRWPNKCSYYIEKIYYHnTHIMECS 95


                  ....*
gi 1755167308 152 LPTYF 156
Cdd:pfam01639  96 QPTHH 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH