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Conserved domains on  [gi|1436050436|ref|YP_009499123|]
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Ycf2 (chloroplast) [Dendrobium aduncum]

Protein Classification

Ycf2( domain architecture ID 11414145)

Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
1-2282 0e+00

Ycf2; Provisional


:

Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4068.70  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436    1 MKRHQFKSWIFELR----EIKNSHYFLDSWIKFDSVGSFTHIFFHQERFMKLFDPRIWSILLSRDSQGATSNRYFTIKGV 76
Cdd:CHL00206     1 MKGHQFKSWIFELReilrEIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436   77 VLLVVVVLISRINNREMVERKNLYLMGLLPIPMNSIGPRKETLEESFWSSNRNRLIVSLLYLPKRKKISESCFMDPQEST 156
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  157 WVLPRKKKRIMPESNRGSRWWRNRIGKKRDSSCQISNETVAGIEISFKEKDSKYLEFLFLSYTDDPIRKDHDWELFDRLS 236
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  237 PRKKRNIINLNSGQLFEILGKDLICYLMSAFREKRPIQGESFFKQQGAGATMQSNDIEHVSHLFSRNKWGISLQNCAQFH 316
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  317 MWQFRQDLFVSWGKNQHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVLSNIQYDSTRSIFVQVTDSSQWKGsSSDQ 396
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKG-SSDQ 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  397 SRDHFDSVRNENSEYHTLIDQTEIQQLKERSILWDPSFLQTERTEIESDRFPKCLFGSSSMSWLLTEPEKRMDNHLLPEE 476
Cdd:CHL00206   400 SRDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEE 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  477 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDPKLLKKKQDVSFVPSRRAEKKEMVDIFKIITYLQDTVSIHPSEP 556
Cdd:CHL00206   480 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISS 559
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  557 DPGCDMVPKDEPDMDSSNKISFLNKNPFFDFFHLFHDRNKGGYALRHDfFESEERFPEMADLFTLSITEPDLVYHRGFAF 636
Cdd:CHL00206   560 DPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHD-FESEERFQEMADLFTLSITEPDLVYHKGFAF 638
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  637 SIDSYGLDQKRFLNEVFNSRDESKKKSLLVLPPLFYEENESFSRRIRKKSVRIYCGNELEDPKLKTAVFASNNIMEAVNQ 716
Cdd:CHL00206   639 SIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQ 718
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  717 YRLIRNLIQIQYSTYGYIRNVSNRFFLMNRSDRNFKYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL--I 794
Cdd:CHL00206   719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLifI 798
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  795 SGTERSMNRDPDayrykyAYRYKWSNGSKNFQEHLEHFVSEQKNPFrvvQVVFDRLRINQYSIDWSEAIDKEDLSKSLRF 874
Cdd:CHL00206   799 SRTERSMNRDPD------AYRYKWSNGSKNFQEHLEHFVSEQKSRF---QVVFDRLRINQYSIDWSEVIDKKDLSKSLRF 869
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  875 FL--------------SKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLKKLKPFLLDDHDTSQR 940
Cdd:CHL00206   870 FLsklllflskkllflSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQK 949
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  941 PKFLINGGTILPFLFKKIPKRVIDSFHTRKNRRKSFDNTDSYLSMISHDRDNWLNPVKPFHRSSLISSFYKANRLRFLND 1020
Cdd:CHL00206   950 SKFLINGGTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNN 1029
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1021 PHHFWFYCNKRFPFDVEKTRINNYDLTYGQFLNILSIRNKIFSLCVGKKRYLFLERETISPIESQVSDIFIPNDFPQSGD 1100
Cdd:CHL00206  1030 PHHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGD 1109
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1101 ETYNfskLYKSFHFPIRSDPFVRGAIYSIADISATPLTEEQIVNLEKTYCQPLSDMNLSDSEGNNLHQYLSFNSNMGLIH 1180
Cdd:CHL00206  1110 ETYN---LYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIH 1186
                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1181 TPCSEKYLPSGKRKKRSLCLKKCVEKGQMYRTFQRDSAFSNLSKWNLFQTYMPWFLTSTGCKYLNFTLLDTLSDPLPILS 1260
Cdd:CHL00206  1187 TPCSEKYLPSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILS 1266
                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1261 SSQKFVSIFHDMMHGSDISRPIPQK----ILPQWTPISEISSQCLQNLLLSEEMIHRnnESPVPLIWAHLRSTNAREFLY 1336
Cdd:CHL00206  1267 SSQKFVSIFHDIMHGSDISWRILQKklglKLPQWNLISEISSKCLHNLLLSEEMIHR--ESESPLIWTHLRSPNVREFLY 1344
                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1337 SIFFLLLVAGYLVRIHLLFVSRASSELQTELEKIKSLMIPSYMMEFRKLLDRYPTSELNPFWLKNLFLVVLEQLGDSLEE 1416
Cdd:CHL00206  1345 SILFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEE 1424
                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1417 IRGsaSGGNMLLGGGPAYGVKSIRSKKKYWKINLIDLVSIIPNPINRIIFSRNTRHLSRTSKEIYSLIRKRKNVNGDWID 1496
Cdd:CHL00206  1425 IRG--SGGNMLLGGGPAYGVKSIRSKKKYLNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWID 1502
                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1497 EKIEFWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSISLRYLVDIHQKDLMNYEF 1576
Cdd:CHL00206  1503 DKIESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEF 1582
                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1577 NRSCLAERRIFLAHYQTITYSQTSCGANSFHSPSpHGKPFSLRLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITV 1656
Cdd:CHL00206  1583 NTSCLAERRIFLAHYQTITYSQTSCGANSFHFPS-HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITV 1661
                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1657 FPNKFLDDKPKGYlIDDIDIDDSDDIDIDDSDDIDDSDDDLDIDTELLTMYMTPKIDRFDITLQFELAKAMSPCIIWIPN 1736
Cdd:CHL00206  1662 FLNKFLDNKPKGF-LIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPN 1740
                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1737 IHDLHVNESNYLSLGLLENYLSRDCERCSTGKILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLLPQQRKHFFILSYTR 1816
Cdd:CHL00206  1741 IHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1820
                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1817 GFHLEKKMFHTNGFGSITMGSNARDLVALINEALSISITQKKSIIETNTIRSALHRKTWDFRSQIRSVQDHGILFYQIGR 1896
Cdd:CHL00206  1821 GFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGR 1900
                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1897 AVTQNVLLSNCPIDPISIYMKKKSCKGGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSSSRHDEKDWITSYG 1976
Cdd:CHL00206  1901 AVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYG 1980
                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1977 FVENDSDLVHGlllllLLEVEGALAGSSRTEKYCSQFDNNRVTLLLRSEPRNQLDMMQNGSCSIVDQRFLYEKYESEFEE 2056
Cdd:CHL00206  1981 LVENDSDLVHG-----LLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEE 2055
                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 2057 GE--GALDPQQIEEDFFNHIVWAPRIWRPCGNLFDCIERPTELGFPYWTGSFRGKWIIYHKEDELQENDSEFLQSGTMQY 2134
Cdd:CHL00206  2056 GEseGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQY 2135
                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 2135 QTRDRSSKEQGFFRTSQFIWDPADPFFSLFKDQPSVSVFSRREFFADEEMSKGLIASQTNPPTSIYKRWFIKNTQEKHFE 2214
Cdd:CHL00206  2136 QTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFE 2215
                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1436050436 2215 LLIHRQRWFRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKhlIHVT 2282
Cdd:CHL00206  2216 LLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMK--IGFM 2281
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
1-2282 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4068.70  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436    1 MKRHQFKSWIFELR----EIKNSHYFLDSWIKFDSVGSFTHIFFHQERFMKLFDPRIWSILLSRDSQGATSNRYFTIKGV 76
Cdd:CHL00206     1 MKGHQFKSWIFELReilrEIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436   77 VLLVVVVLISRINNREMVERKNLYLMGLLPIPMNSIGPRKETLEESFWSSNRNRLIVSLLYLPKRKKISESCFMDPQEST 156
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  157 WVLPRKKKRIMPESNRGSRWWRNRIGKKRDSSCQISNETVAGIEISFKEKDSKYLEFLFLSYTDDPIRKDHDWELFDRLS 236
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  237 PRKKRNIINLNSGQLFEILGKDLICYLMSAFREKRPIQGESFFKQQGAGATMQSNDIEHVSHLFSRNKWGISLQNCAQFH 316
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  317 MWQFRQDLFVSWGKNQHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVLSNIQYDSTRSIFVQVTDSSQWKGsSSDQ 396
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKG-SSDQ 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  397 SRDHFDSVRNENSEYHTLIDQTEIQQLKERSILWDPSFLQTERTEIESDRFPKCLFGSSSMSWLLTEPEKRMDNHLLPEE 476
Cdd:CHL00206   400 SRDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEE 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  477 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDPKLLKKKQDVSFVPSRRAEKKEMVDIFKIITYLQDTVSIHPSEP 556
Cdd:CHL00206   480 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISS 559
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  557 DPGCDMVPKDEPDMDSSNKISFLNKNPFFDFFHLFHDRNKGGYALRHDfFESEERFPEMADLFTLSITEPDLVYHRGFAF 636
Cdd:CHL00206   560 DPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHD-FESEERFQEMADLFTLSITEPDLVYHKGFAF 638
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  637 SIDSYGLDQKRFLNEVFNSRDESKKKSLLVLPPLFYEENESFSRRIRKKSVRIYCGNELEDPKLKTAVFASNNIMEAVNQ 716
Cdd:CHL00206   639 SIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQ 718
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  717 YRLIRNLIQIQYSTYGYIRNVSNRFFLMNRSDRNFKYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL--I 794
Cdd:CHL00206   719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLifI 798
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  795 SGTERSMNRDPDayrykyAYRYKWSNGSKNFQEHLEHFVSEQKNPFrvvQVVFDRLRINQYSIDWSEAIDKEDLSKSLRF 874
Cdd:CHL00206   799 SRTERSMNRDPD------AYRYKWSNGSKNFQEHLEHFVSEQKSRF---QVVFDRLRINQYSIDWSEVIDKKDLSKSLRF 869
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  875 FL--------------SKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLKKLKPFLLDDHDTSQR 940
Cdd:CHL00206   870 FLsklllflskkllflSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQK 949
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  941 PKFLINGGTILPFLFKKIPKRVIDSFHTRKNRRKSFDNTDSYLSMISHDRDNWLNPVKPFHRSSLISSFYKANRLRFLND 1020
Cdd:CHL00206   950 SKFLINGGTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNN 1029
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1021 PHHFWFYCNKRFPFDVEKTRINNYDLTYGQFLNILSIRNKIFSLCVGKKRYLFLERETISPIESQVSDIFIPNDFPQSGD 1100
Cdd:CHL00206  1030 PHHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGD 1109
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1101 ETYNfskLYKSFHFPIRSDPFVRGAIYSIADISATPLTEEQIVNLEKTYCQPLSDMNLSDSEGNNLHQYLSFNSNMGLIH 1180
Cdd:CHL00206  1110 ETYN---LYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIH 1186
                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1181 TPCSEKYLPSGKRKKRSLCLKKCVEKGQMYRTFQRDSAFSNLSKWNLFQTYMPWFLTSTGCKYLNFTLLDTLSDPLPILS 1260
Cdd:CHL00206  1187 TPCSEKYLPSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILS 1266
                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1261 SSQKFVSIFHDMMHGSDISRPIPQK----ILPQWTPISEISSQCLQNLLLSEEMIHRnnESPVPLIWAHLRSTNAREFLY 1336
Cdd:CHL00206  1267 SSQKFVSIFHDIMHGSDISWRILQKklglKLPQWNLISEISSKCLHNLLLSEEMIHR--ESESPLIWTHLRSPNVREFLY 1344
                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1337 SIFFLLLVAGYLVRIHLLFVSRASSELQTELEKIKSLMIPSYMMEFRKLLDRYPTSELNPFWLKNLFLVVLEQLGDSLEE 1416
Cdd:CHL00206  1345 SILFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEE 1424
                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1417 IRGsaSGGNMLLGGGPAYGVKSIRSKKKYWKINLIDLVSIIPNPINRIIFSRNTRHLSRTSKEIYSLIRKRKNVNGDWID 1496
Cdd:CHL00206  1425 IRG--SGGNMLLGGGPAYGVKSIRSKKKYLNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWID 1502
                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1497 EKIEFWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSISLRYLVDIHQKDLMNYEF 1576
Cdd:CHL00206  1503 DKIESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEF 1582
                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1577 NRSCLAERRIFLAHYQTITYSQTSCGANSFHSPSpHGKPFSLRLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITV 1656
Cdd:CHL00206  1583 NTSCLAERRIFLAHYQTITYSQTSCGANSFHFPS-HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITV 1661
                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1657 FPNKFLDDKPKGYlIDDIDIDDSDDIDIDDSDDIDDSDDDLDIDTELLTMYMTPKIDRFDITLQFELAKAMSPCIIWIPN 1736
Cdd:CHL00206  1662 FLNKFLDNKPKGF-LIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPN 1740
                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1737 IHDLHVNESNYLSLGLLENYLSRDCERCSTGKILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLLPQQRKHFFILSYTR 1816
Cdd:CHL00206  1741 IHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1820
                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1817 GFHLEKKMFHTNGFGSITMGSNARDLVALINEALSISITQKKSIIETNTIRSALHRKTWDFRSQIRSVQDHGILFYQIGR 1896
Cdd:CHL00206  1821 GFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGR 1900
                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1897 AVTQNVLLSNCPIDPISIYMKKKSCKGGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSSSRHDEKDWITSYG 1976
Cdd:CHL00206  1901 AVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYG 1980
                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1977 FVENDSDLVHGlllllLLEVEGALAGSSRTEKYCSQFDNNRVTLLLRSEPRNQLDMMQNGSCSIVDQRFLYEKYESEFEE 2056
Cdd:CHL00206  1981 LVENDSDLVHG-----LLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEE 2055
                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 2057 GE--GALDPQQIEEDFFNHIVWAPRIWRPCGNLFDCIERPTELGFPYWTGSFRGKWIIYHKEDELQENDSEFLQSGTMQY 2134
Cdd:CHL00206  2056 GEseGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQY 2135
                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 2135 QTRDRSSKEQGFFRTSQFIWDPADPFFSLFKDQPSVSVFSRREFFADEEMSKGLIASQTNPPTSIYKRWFIKNTQEKHFE 2214
Cdd:CHL00206  2136 QTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFE 2215
                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1436050436 2215 LLIHRQRWFRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKhlIHVT 2282
Cdd:CHL00206  2216 LLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMK--IGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
1-1477 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2646.68  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436    1 MKRHQFKSWIFELREI----KNSHYFLDSWIKFDSVGSFTHIFFHQERFMKLFDPRIWSILLSRDSQGATSNRYFTIKGV 76
Cdd:pfam05695    1 MKGHQFKSWIFELREIlreiKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436   77 VLLVVVVLISRINNREMVERKNLYLMGLLPIPMNSIGPRKETLEESFWSSNRNRLIVSLLYLPKRKKISESCFMDPQEST 156
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  157 WVLPRKKKRIMPESNRGSRWWRNRIGKKRDSSCQISNETVAGIEISFKEKDSKYLEFLFLSYTDDPIRKDHDWELFDRLS 236
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  237 PRKKRNIINLNSGQLFEILGKDLICYLMSAFREKRPIQGESFFKQQGAGATMQSNDIEHVSHLFSRNKWGISLQNCAQFH 316
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  317 MWQFRQDLFVSWGKNQHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVLSNIQYDSTRSIFVQVTDSSQWKGsSSDQ 396
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKG-SSDQ 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  397 SRDHFDSVRNENSEYHTLIDQTEIQQLKERSILWDPSFLQTERTEIESDRFPKCLFGSSSMSWLLTEPEKRMDNHLLPEE 476
Cdd:pfam05695  400 SRDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEE 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  477 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDPKLLKKKQDVSFVPSRRAEKKEMVDIFKIITYLQDTVSIHPSEP 556
Cdd:pfam05695  480 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPISS 559
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  557 DPGCDMVPKDEPDMDSSNKISFLNKNPFFDFFHLFHDRNKGGYALRHDfFESEERFPEMADLFTLSITEPDLVYHRGFAF 636
Cdd:pfam05695  560 DPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHD-FESEERFQEMADLFTLSITEPDLVYHKGFAF 638
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  637 SIDSYGLDQKRFLNEVFNSRDESKKKSLLVLPPLFYEENESFSRRIRKKSVRIYCGNELEDPKLKTAVFASNNIMEAVNQ 716
Cdd:pfam05695  639 SIDSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDPKPKIVVFASNNIMEAVNQ 718
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  717 YRLIRNLIQIQYSTYGYIRNVSNRFFLMNRSDRNFKYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL--I 794
Cdd:pfam05695  719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLifI 798
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  795 SGTERSMNRDPDayrykyAYRYKWSNGSKNFQEHLEHFVSEQKNPFrvvQVVFDRLRINQYSIDWSEAIDKEDLSKSLRF 874
Cdd:pfam05695  799 SRTERSMNRDPN------AYRYKWSNGSKNFQEHLEHFVSEQKSRF---QVVFDRLRINQYSIDWSEVIDKKDLSKSLRF 869
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  875 FLSK--------------SLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLKKLKPFLLDDHDTSQR 940
Cdd:pfam05695  870 FLSKsllflskfllflsnSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQK 949
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  941 PKFLINGGTILPFLFKKIPKRVIDSFHTRKNRRKSFDNTDSYLSMISHDRDNWLNPVKPFHRSSLISSFYKANRLRFLND 1020
Cdd:pfam05695  950 SKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNN 1029
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1021 PHHFWFYCNKRFPFDVEKTRINNYDLTYGQFLNILSIRNKIFSLCVGKKRYLFLERETISPIESQVSDIFIPNDFPQSGD 1100
Cdd:pfam05695 1030 PHHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGD 1109
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1101 ETYNfskLYKSFHFPIRSDPFVRGAIYSIADISATPLTEEQIVNLEKTYCQPLSDMNLSDSEGNNLHQYLSFNSNMGLIH 1180
Cdd:pfam05695 1110 ETYN---LYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIH 1186
                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1181 TPCSEKYLPSGKRKKRSLCLKKCVEKGQMYRTFQRDSAFSNLSKWNLFQTYMPWFLTSTGCKYLNFTLLDTLSDPLPILS 1260
Cdd:pfam05695 1187 TPCSEKYLPSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILS 1266
                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1261 SSQKFVSIFHDMMHGSDISRPIPQK--ILPQWTPISEISSQCLQNLLLSEEMIHRNNESpvPLIWAHLRSTNAREFLYSI 1338
Cdd:pfam05695 1267 SSQKFVSIFHDIMHGSDILWRIRQKklCLPQWNLISEISSKCLHNLLLSEEMIHRNNES--PLISTHLRSPNVREFFYSI 1344
                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1339 FFLLLVAGYLVRIHLLFVSRASSELQTELEKIKSLMIPSYMMEFRKLLDRYPTSELNPFWLKNLFLVVLEQLGDSLEEIR 1418
Cdd:pfam05695 1345 LFLLLVAGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIR 1424
                         1450      1460      1470      1480      1490      1500
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1436050436 1419 GSASGGNMLLGGGPAYGVKSIRSKKKYWKINL---IDLVSIIPNPINRIIFSRNTRHLSRTS 1477
Cdd:pfam05695 1425 GSASGGNMLLGGGPAYGVKSIRSKKKYLNINLidiIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
1614-1797 2.10e-72

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 239.20  E-value: 2.10e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1614 KPFSLRLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITVFPNKFLDDKPKGYLIDDIDIDdsddididdsddidds 1693
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDGM---------------- 64
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1694 dddldidtelltmyMTPKIDRFDITLQFELAKAMSPCIIWIPNIHDLHVN-------ESNYLSLGLLENYLSRDCERCST 1766
Cdd:cd19505     65 --------------LILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSST 130
                          170       180       190
                   ....*....|....*....|....*....|.
gi 1436050436 1767 GKILVIASTHIPQKVDPALIAPNKLNTCIKI 1797
Cdd:cd19505    131 RNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
1619-1872 3.12e-07

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 54.63  E-value: 3.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1619 RLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITVfpnkflddkpKGyliddididdsddididdsddiddsdddld 1698
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRV----------RG------------------------------ 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1699 idTELLTMYM--TPKIDRfDItlqFELAKAMSPCIIWIPNI--------HDLHVNESNYLS---LGLLENYLSRdcercs 1765
Cdd:COG1222    146 --SELVSKYIgeGARNVR-EV---FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRTVnqlLAELDGFESR------ 213
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1766 tGKILVIASTHIPQKVDPALIAPNKLNTCIKIrrlLLP--QQRKHFFILsYTRGFHLEKKMFhTNGFGSITMGSNARDLV 1843
Cdd:COG1222    214 -GDVLIIAATNRPDLLDPALLRPGRFDRVIEV---PLPdeEAREEILKI-HLRDMPLADDVD-LDKLAKLTEGFSGADLK 287
                          250       260
                   ....*....|....*....|....*....
gi 1436050436 1844 ALINEALSISITQKKSIIETNTIRSALHR 1872
Cdd:COG1222    288 AIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
1-2282 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4068.70  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436    1 MKRHQFKSWIFELR----EIKNSHYFLDSWIKFDSVGSFTHIFFHQERFMKLFDPRIWSILLSRDSQGATSNRYFTIKGV 76
Cdd:CHL00206     1 MKGHQFKSWIFELReilrEIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436   77 VLLVVVVLISRINNREMVERKNLYLMGLLPIPMNSIGPRKETLEESFWSSNRNRLIVSLLYLPKRKKISESCFMDPQEST 156
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  157 WVLPRKKKRIMPESNRGSRWWRNRIGKKRDSSCQISNETVAGIEISFKEKDSKYLEFLFLSYTDDPIRKDHDWELFDRLS 236
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  237 PRKKRNIINLNSGQLFEILGKDLICYLMSAFREKRPIQGESFFKQQGAGATMQSNDIEHVSHLFSRNKWGISLQNCAQFH 316
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  317 MWQFRQDLFVSWGKNQHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVLSNIQYDSTRSIFVQVTDSSQWKGsSSDQ 396
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKG-SSDQ 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  397 SRDHFDSVRNENSEYHTLIDQTEIQQLKERSILWDPSFLQTERTEIESDRFPKCLFGSSSMSWLLTEPEKRMDNHLLPEE 476
Cdd:CHL00206   400 SRDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEE 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  477 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDPKLLKKKQDVSFVPSRRAEKKEMVDIFKIITYLQDTVSIHPSEP 556
Cdd:CHL00206   480 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISS 559
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  557 DPGCDMVPKDEPDMDSSNKISFLNKNPFFDFFHLFHDRNKGGYALRHDfFESEERFPEMADLFTLSITEPDLVYHRGFAF 636
Cdd:CHL00206   560 DPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHD-FESEERFQEMADLFTLSITEPDLVYHKGFAF 638
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  637 SIDSYGLDQKRFLNEVFNSRDESKKKSLLVLPPLFYEENESFSRRIRKKSVRIYCGNELEDPKLKTAVFASNNIMEAVNQ 716
Cdd:CHL00206   639 SIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQ 718
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  717 YRLIRNLIQIQYSTYGYIRNVSNRFFLMNRSDRNFKYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL--I 794
Cdd:CHL00206   719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLifI 798
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  795 SGTERSMNRDPDayrykyAYRYKWSNGSKNFQEHLEHFVSEQKNPFrvvQVVFDRLRINQYSIDWSEAIDKEDLSKSLRF 874
Cdd:CHL00206   799 SRTERSMNRDPD------AYRYKWSNGSKNFQEHLEHFVSEQKSRF---QVVFDRLRINQYSIDWSEVIDKKDLSKSLRF 869
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  875 FL--------------SKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLKKLKPFLLDDHDTSQR 940
Cdd:CHL00206   870 FLsklllflskkllflSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQK 949
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  941 PKFLINGGTILPFLFKKIPKRVIDSFHTRKNRRKSFDNTDSYLSMISHDRDNWLNPVKPFHRSSLISSFYKANRLRFLND 1020
Cdd:CHL00206   950 SKFLINGGTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNN 1029
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1021 PHHFWFYCNKRFPFDVEKTRINNYDLTYGQFLNILSIRNKIFSLCVGKKRYLFLERETISPIESQVSDIFIPNDFPQSGD 1100
Cdd:CHL00206  1030 PHHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGD 1109
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1101 ETYNfskLYKSFHFPIRSDPFVRGAIYSIADISATPLTEEQIVNLEKTYCQPLSDMNLSDSEGNNLHQYLSFNSNMGLIH 1180
Cdd:CHL00206  1110 ETYN---LYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIH 1186
                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1181 TPCSEKYLPSGKRKKRSLCLKKCVEKGQMYRTFQRDSAFSNLSKWNLFQTYMPWFLTSTGCKYLNFTLLDTLSDPLPILS 1260
Cdd:CHL00206  1187 TPCSEKYLPSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILS 1266
                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1261 SSQKFVSIFHDMMHGSDISRPIPQK----ILPQWTPISEISSQCLQNLLLSEEMIHRnnESPVPLIWAHLRSTNAREFLY 1336
Cdd:CHL00206  1267 SSQKFVSIFHDIMHGSDISWRILQKklglKLPQWNLISEISSKCLHNLLLSEEMIHR--ESESPLIWTHLRSPNVREFLY 1344
                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1337 SIFFLLLVAGYLVRIHLLFVSRASSELQTELEKIKSLMIPSYMMEFRKLLDRYPTSELNPFWLKNLFLVVLEQLGDSLEE 1416
Cdd:CHL00206  1345 SILFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEE 1424
                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1417 IRGsaSGGNMLLGGGPAYGVKSIRSKKKYWKINLIDLVSIIPNPINRIIFSRNTRHLSRTSKEIYSLIRKRKNVNGDWID 1496
Cdd:CHL00206  1425 IRG--SGGNMLLGGGPAYGVKSIRSKKKYLNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWID 1502
                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1497 EKIEFWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSISLRYLVDIHQKDLMNYEF 1576
Cdd:CHL00206  1503 DKIESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEF 1582
                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1577 NRSCLAERRIFLAHYQTITYSQTSCGANSFHSPSpHGKPFSLRLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITV 1656
Cdd:CHL00206  1583 NTSCLAERRIFLAHYQTITYSQTSCGANSFHFPS-HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITV 1661
                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1657 FPNKFLDDKPKGYlIDDIDIDDSDDIDIDDSDDIDDSDDDLDIDTELLTMYMTPKIDRFDITLQFELAKAMSPCIIWIPN 1736
Cdd:CHL00206  1662 FLNKFLDNKPKGF-LIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPN 1740
                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1737 IHDLHVNESNYLSLGLLENYLSRDCERCSTGKILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLLPQQRKHFFILSYTR 1816
Cdd:CHL00206  1741 IHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1820
                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1817 GFHLEKKMFHTNGFGSITMGSNARDLVALINEALSISITQKKSIIETNTIRSALHRKTWDFRSQIRSVQDHGILFYQIGR 1896
Cdd:CHL00206  1821 GFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGR 1900
                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1897 AVTQNVLLSNCPIDPISIYMKKKSCKGGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSSSRHDEKDWITSYG 1976
Cdd:CHL00206  1901 AVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYG 1980
                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1977 FVENDSDLVHGlllllLLEVEGALAGSSRTEKYCSQFDNNRVTLLLRSEPRNQLDMMQNGSCSIVDQRFLYEKYESEFEE 2056
Cdd:CHL00206  1981 LVENDSDLVHG-----LLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEE 2055
                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 2057 GE--GALDPQQIEEDFFNHIVWAPRIWRPCGNLFDCIERPTELGFPYWTGSFRGKWIIYHKEDELQENDSEFLQSGTMQY 2134
Cdd:CHL00206  2056 GEseGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQY 2135
                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 2135 QTRDRSSKEQGFFRTSQFIWDPADPFFSLFKDQPSVSVFSRREFFADEEMSKGLIASQTNPPTSIYKRWFIKNTQEKHFE 2214
Cdd:CHL00206  2136 QTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFE 2215
                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1436050436 2215 LLIHRQRWFRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKhlIHVT 2282
Cdd:CHL00206  2216 LLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMK--IGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
1-1477 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2646.68  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436    1 MKRHQFKSWIFELREI----KNSHYFLDSWIKFDSVGSFTHIFFHQERFMKLFDPRIWSILLSRDSQGATSNRYFTIKGV 76
Cdd:pfam05695    1 MKGHQFKSWIFELREIlreiKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436   77 VLLVVVVLISRINNREMVERKNLYLMGLLPIPMNSIGPRKETLEESFWSSNRNRLIVSLLYLPKRKKISESCFMDPQEST 156
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  157 WVLPRKKKRIMPESNRGSRWWRNRIGKKRDSSCQISNETVAGIEISFKEKDSKYLEFLFLSYTDDPIRKDHDWELFDRLS 236
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  237 PRKKRNIINLNSGQLFEILGKDLICYLMSAFREKRPIQGESFFKQQGAGATMQSNDIEHVSHLFSRNKWGISLQNCAQFH 316
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  317 MWQFRQDLFVSWGKNQHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVLSNIQYDSTRSIFVQVTDSSQWKGsSSDQ 396
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKG-SSDQ 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  397 SRDHFDSVRNENSEYHTLIDQTEIQQLKERSILWDPSFLQTERTEIESDRFPKCLFGSSSMSWLLTEPEKRMDNHLLPEE 476
Cdd:pfam05695  400 SRDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEE 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  477 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDPKLLKKKQDVSFVPSRRAEKKEMVDIFKIITYLQDTVSIHPSEP 556
Cdd:pfam05695  480 IEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPISS 559
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  557 DPGCDMVPKDEPDMDSSNKISFLNKNPFFDFFHLFHDRNKGGYALRHDfFESEERFPEMADLFTLSITEPDLVYHRGFAF 636
Cdd:pfam05695  560 DPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHD-FESEERFQEMADLFTLSITEPDLVYHKGFAF 638
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  637 SIDSYGLDQKRFLNEVFNSRDESKKKSLLVLPPLFYEENESFSRRIRKKSVRIYCGNELEDPKLKTAVFASNNIMEAVNQ 716
Cdd:pfam05695  639 SIDSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDPKPKIVVFASNNIMEAVNQ 718
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  717 YRLIRNLIQIQYSTYGYIRNVSNRFFLMNRSDRNFKYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL--I 794
Cdd:pfam05695  719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLifI 798
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  795 SGTERSMNRDPDayrykyAYRYKWSNGSKNFQEHLEHFVSEQKNPFrvvQVVFDRLRINQYSIDWSEAIDKEDLSKSLRF 874
Cdd:pfam05695  799 SRTERSMNRDPN------AYRYKWSNGSKNFQEHLEHFVSEQKSRF---QVVFDRLRINQYSIDWSEVIDKKDLSKSLRF 869
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  875 FLSK--------------SLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLKKLKPFLLDDHDTSQR 940
Cdd:pfam05695  870 FLSKsllflskfllflsnSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQK 949
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436  941 PKFLINGGTILPFLFKKIPKRVIDSFHTRKNRRKSFDNTDSYLSMISHDRDNWLNPVKPFHRSSLISSFYKANRLRFLND 1020
Cdd:pfam05695  950 SKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNN 1029
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1021 PHHFWFYCNKRFPFDVEKTRINNYDLTYGQFLNILSIRNKIFSLCVGKKRYLFLERETISPIESQVSDIFIPNDFPQSGD 1100
Cdd:pfam05695 1030 PHHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGD 1109
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1101 ETYNfskLYKSFHFPIRSDPFVRGAIYSIADISATPLTEEQIVNLEKTYCQPLSDMNLSDSEGNNLHQYLSFNSNMGLIH 1180
Cdd:pfam05695 1110 ETYN---LYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIH 1186
                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1181 TPCSEKYLPSGKRKKRSLCLKKCVEKGQMYRTFQRDSAFSNLSKWNLFQTYMPWFLTSTGCKYLNFTLLDTLSDPLPILS 1260
Cdd:pfam05695 1187 TPCSEKYLPSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILS 1266
                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1261 SSQKFVSIFHDMMHGSDISRPIPQK--ILPQWTPISEISSQCLQNLLLSEEMIHRNNESpvPLIWAHLRSTNAREFLYSI 1338
Cdd:pfam05695 1267 SSQKFVSIFHDIMHGSDILWRIRQKklCLPQWNLISEISSKCLHNLLLSEEMIHRNNES--PLISTHLRSPNVREFFYSI 1344
                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1339 FFLLLVAGYLVRIHLLFVSRASSELQTELEKIKSLMIPSYMMEFRKLLDRYPTSELNPFWLKNLFLVVLEQLGDSLEEIR 1418
Cdd:pfam05695 1345 LFLLLVAGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIR 1424
                         1450      1460      1470      1480      1490      1500
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1436050436 1419 GSASGGNMLLGGGPAYGVKSIRSKKKYWKINL---IDLVSIIPNPINRIIFSRNTRHLSRTS 1477
Cdd:pfam05695 1425 GSASGGNMLLGGGPAYGVKSIRSKKKYLNINLidiIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
1614-1797 2.10e-72

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 239.20  E-value: 2.10e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1614 KPFSLRLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITVFPNKFLDDKPKGYLIDDIDIDdsddididdsddidds 1693
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDGM---------------- 64
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1694 dddldidtelltmyMTPKIDRFDITLQFELAKAMSPCIIWIPNIHDLHVN-------ESNYLSLGLLENYLSRDCERCST 1766
Cdd:cd19505     65 --------------LILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSST 130
                          170       180       190
                   ....*....|....*....|....*....|.
gi 1436050436 1767 GKILVIASTHIPQKVDPALIAPNKLNTCIKI 1797
Cdd:cd19505    131 RNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
1615-1797 9.37e-10

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 59.60  E-value: 9.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1615 PFSLRLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITVfpnkflddkpkgyliddididdsddididdsddiddsd 1694
Cdd:cd19481     16 SRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVV-------------------------------------- 57
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1695 ddldIDTELLTMYMTPKIDRfdITLQFELAKAMSPCIIWI-----------PNIHDLHVNE-SNYLsLGLLENYLSRDce 1762
Cdd:cd19481     58 ----KLSSLLSKYVGESEKN--LRKIFERARRLAPCILFIdeidaigrkrdSSGESGELRRvLNQL-LTELDGVNSRS-- 128
                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1436050436 1763 rcstgKILVIASTHIPQKVDPALIAPNKLNTCIKI 1797
Cdd:cd19481    129 -----KVLVIAATNRPDLLDPALLRPGRFDEVIEF 158
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
1619-1872 3.12e-07

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 54.63  E-value: 3.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1619 RLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITVfpnkflddkpKGyliddididdsddididdsddiddsdddld 1698
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRV----------RG------------------------------ 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1699 idTELLTMYM--TPKIDRfDItlqFELAKAMSPCIIWIPNI--------HDLHVNESNYLS---LGLLENYLSRdcercs 1765
Cdd:COG1222    146 --SELVSKYIgeGARNVR-EV---FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRTVnqlLAELDGFESR------ 213
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1766 tGKILVIASTHIPQKVDPALIAPNKLNTCIKIrrlLLP--QQRKHFFILsYTRGFHLEKKMFhTNGFGSITMGSNARDLV 1843
Cdd:COG1222    214 -GDVLIIAATNRPDLLDPALLRPGRFDRVIEV---PLPdeEAREEILKI-HLRDMPLADDVD-LDKLAKLTEGFSGADLK 287
                          250       260
                   ....*....|....*....|....*....
gi 1436050436 1844 ALINEALSISITQKKSIIETNTIRSALHR 1872
Cdd:COG1222    288 AIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
1628-1786 6.41e-07

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 50.67  E-value: 6.41e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1628 ILVIGSIGTGRSCLVKYLATNSYVPFITV----FPNKFLDDKPKgyliddididdsddididdsddiddsdddldidtel 1703
Cdd:pfam00004    1 LLLYGPPGTGKTTLAKAVAKELGAPFIEIsgseLVSKYVGESEK------------------------------------ 44
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1704 ltmymtpkidrfDITLQFELAKAMSPCIIWIPNIHDLHVNES-----------NYLsLGLLENYLSrdcercSTGKILVI 1772
Cdd:pfam00004   45 ------------RLRELFEAAKKLAPCVIFIDEIDALAGSRGsggdsesrrvvNQL-LTELDGFTS------SNSKVIVI 105
                          170
                   ....*....|....
gi 1436050436 1773 ASTHIPQKVDPALI 1786
Cdd:pfam00004  106 AATNRPDKLDPALL 119
hflB PRK10733
ATP-dependent zinc metalloprotease FtsH;
1626-1914 1.89e-06

ATP-dependent zinc metalloprotease FtsH;


Pssm-ID: 182683 [Multi-domain]  Cd Length: 644  Bit Score: 53.11  E-value: 1.89e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1626 RGILVIGSIGTGRSCLVKYLATNSYVPFITVFPNKFLDdkpkgyliddididdsddididdsddiddsdddldidtellt 1705
Cdd:PRK10733   186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE------------------------------------------ 223
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1706 MYMTPKIDRfdITLQFELAKAMSPCIIWIPNIHDLHVNESNYLSLG-------LLENYLSRDCERCSTGkILVIASTHIP 1778
Cdd:PRK10733   224 MFVGVGASR--VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGhdereqtLNQMLVEMDGFEGNEG-IIVIAATNRP 300
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1779 QKVDPALIAPNKLNTCIKIRrllLPQQRKHFFILSytrgFHLEKKMFHTNGFGSI----TMGSNARDLVALINEALSISI 1854
Cdd:PRK10733   301 DVLDPALLRPGRFDRQVVVG---LPDVRGREQILK----VHMRRVPLAPDIDAAIiargTPGFSGADLANLVNEAALFAA 373
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1436050436 1855 TQKKSIIETNTIRSALHRKTW--DFRSQIRS-VQDHGILFYQIGRAVTQNVLLSNCPIDPISI 1914
Cdd:PRK10733   374 RGNKRVVSMVEFEKAKDKIMMgaERRSMVMTeAQKESTAYHEAGHAIIGRLVPEHDPVHKVTI 436
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
1619-1872 3.44e-06

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 51.84  E-value: 3.44e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1619 RLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITVFPnkflddkpkgyliddididdsddididdsddiddsdddld 1698
Cdd:COG0464    185 EYGLPPPRGLLLYGPPGTGKTLLARALAGELGLPLIEVDL---------------------------------------- 224
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1699 idTELLTMYM---TPKIDRfditlQFELAKAMSPCIIWI----------PNIHDLHVNE-SNYLsLGLLENYlsrdcerc 1764
Cdd:COG0464    225 --SDLVSKYVgetEKNLRE-----VFDKARGLAPCVLFIdeadalagkrGEVGDGVGRRvVNTL-LTEMEEL-------- 288
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1765 sTGKILVIASTHIPQKVDPALiapnklntcikIRR--------LLLPQQRKHFFILsYTRGFHLEKKmFHTNGFGSITMG 1836
Cdd:COG0464    289 -RSDVVVIAATNRPDLLDPAL-----------LRRfdeiiffpLPDAEERLEIFRI-HLRKRPLDED-VDLEELAEATEG 354
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1436050436 1837 SNARDLVALINEALSISITQKKSIIETNTIRSALHR 1872
Cdd:COG0464    355 LSGADIRNVVRRAALQALRLGREPVTTEDLLEALER 390
RecA-like_CDC48_r2-like cd19511
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ...
1608-1795 6.52e-06

second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410919 [Multi-domain]  Cd Length: 159  Bit Score: 48.43  E-value: 6.52e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1608 SPSPHGKPFSlRLALSPSRGILVIGSIGTGRSCLVKYLATNSYVPFITVfpnkflddkpKGyliddididdsddididds 1687
Cdd:cd19511     11 WPLKHPDAFK-RLGIRPPKGVLLYGPPGCGKTLLAKALASEAGLNFISV----------KG------------------- 60
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1436050436 1688 ddiddsdddldidTELLTMYMTpKIDRFdITLQFELAKAMSPCIIWIPNIHDLHVNESNYLSLGLLENYLSR---DCERC 1764
Cdd:cd19511     61 -------------PELFSKYVG-ESERA-VREIFQKARQAAPCIIFFDEIDSLAPRRGQSDSSGVTDRVVSQlltELDGI 125
                          170       180       190
                   ....*....|....*....|....*....|..
gi 1436050436 1765 STGK-ILVIASTHIPQKVDPALIAPNKLNTCI 1795
Cdd:cd19511    126 ESLKgVVVIAATNRPDMIDPALLRPGRLDKLI 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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