NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1381391262|ref|YP_009478038|]
View 

hypothetical protein RF2 (chloroplast) [Arabis flagellosa]

Protein Classification

Ycf2( domain architecture ID 11414145)

Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2296 0e+00

Ycf2; Provisional


:

Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4141.11  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRILSILLLRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262   81 VLFLVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWPISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVKVTDSSQLNGSSDQF 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNNLLPEES 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  561 LGYDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFEAEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:CHL00206   561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  641 DSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDPKPKRVVFASNNIIEAVNQYR 720
Cdd:CHL00206   641 DSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  721 LIRNLIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 800
Cdd:CHL00206   721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  801 SRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVMFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLRFF 880
Cdd:CHL00206   799 SRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLLFL 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  881 lskllrflSKLLLFLSNSLPFLFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 960
Cdd:CHL00206   879 --------SKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  961 KFLINGGTISPFLFNKIPKWIIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1040
Cdd:CHL00206   951 KFLINGGTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1041 HHFCFYCNKRFPFYVEKAHLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1120
Cdd:CHL00206  1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1121 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNRSDSEEKSLHQYLNFNSNMGLIHTP 1200
Cdd:CHL00206  1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1201 CSEKYL---QRKKRSLRlksLKRCVDKGQLDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRIL 1277
Cdd:CHL00206  1189 CSEKYLpseKRKKRSLC---LKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPIL 1265

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1278 SSSQKFVSIFHDIMHGLDISWRILQKKL--CLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISIHLRSPNVREVLYS 1355
Cdd:CHL00206  1266 SSSQKFVSIFHDIMHGSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYS 1345

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1356 ILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEI 1435
Cdd:CHL00206  1346 ILFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEI 1425

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1436 RGSGGNMLWGGDPAYGVKSIRSKKKDLKINFidiIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWID 1515
Cdd:CHL00206  1426 RGSGGNMLLGGGPAYGVKSIRSKKKYLNINL---IDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWID 1502

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1516 DKIESWVANSDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHNDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEF 1595
Cdd:CHL00206  1503 DKIESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEF 1582

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1596 NTSCLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRSVLVIGSIGIGRSYLVKYLATNSYVPFITVF 1675
Cdd:CHL00206  1583 NTSCLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVF 1662

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1676 LNKFLDNKPKGFFIDDIDIDDSDDIDASNDIDRELDTelELLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIIWIPN 1755
Cdd:CHL00206  1663 LNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT--ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPN 1740

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1756 IHDLDVNESNYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1835
Cdd:CHL00206  1741 IHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1820

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1836 GFHLEKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGR 1915
Cdd:CHL00206  1821 GFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGR 1900

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1916 AVAQNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPGPDEKTRITSYG 1995
Cdd:CHL00206  1901 AVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYG 1980

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1996 FIENDSDLVHGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLYEKYESEFEEGEGEG 2075
Cdd:CHL00206  1981 LVENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGESEG 2060

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 2076 VLDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYLAGSFRGRRIIYDEKYELQENDSEFLQSGTMQYQRRDR 2155
Cdd:CHL00206  2061 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDR 2140

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 2156 SSKEQGFFRISQFIWDPADPLFFLFKEQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQR 2235
Cdd:CHL00206  2141 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHR 2220

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1381391262 2236 QRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDRMTKTLLKKRWLFPDEMKIGFM 2296
Cdd:CHL00206  2221 QRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2296 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4141.11  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRILSILLLRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262   81 VLFLVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWPISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVKVTDSSQLNGSSDQF 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNNLLPEES 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  561 LGYDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFEAEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:CHL00206   561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  641 DSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDPKPKRVVFASNNIIEAVNQYR 720
Cdd:CHL00206   641 DSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  721 LIRNLIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 800
Cdd:CHL00206   721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  801 SRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVMFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLRFF 880
Cdd:CHL00206   799 SRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLLFL 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  881 lskllrflSKLLLFLSNSLPFLFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 960
Cdd:CHL00206   879 --------SKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  961 KFLINGGTISPFLFNKIPKWIIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1040
Cdd:CHL00206   951 KFLINGGTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1041 HHFCFYCNKRFPFYVEKAHLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1120
Cdd:CHL00206  1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1121 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNRSDSEEKSLHQYLNFNSNMGLIHTP 1200
Cdd:CHL00206  1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1201 CSEKYL---QRKKRSLRlksLKRCVDKGQLDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRIL 1277
Cdd:CHL00206  1189 CSEKYLpseKRKKRSLC---LKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPIL 1265

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1278 SSSQKFVSIFHDIMHGLDISWRILQKKL--CLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISIHLRSPNVREVLYS 1355
Cdd:CHL00206  1266 SSSQKFVSIFHDIMHGSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYS 1345

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1356 ILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEI 1435
Cdd:CHL00206  1346 ILFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEI 1425

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1436 RGSGGNMLWGGDPAYGVKSIRSKKKDLKINFidiIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWID 1515
Cdd:CHL00206  1426 RGSGGNMLLGGGPAYGVKSIRSKKKYLNINL---IDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWID 1502

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1516 DKIESWVANSDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHNDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEF 1595
Cdd:CHL00206  1503 DKIESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEF 1582

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1596 NTSCLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRSVLVIGSIGIGRSYLVKYLATNSYVPFITVF 1675
Cdd:CHL00206  1583 NTSCLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVF 1662

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1676 LNKFLDNKPKGFFIDDIDIDDSDDIDASNDIDRELDTelELLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIIWIPN 1755
Cdd:CHL00206  1663 LNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT--ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPN 1740

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1756 IHDLDVNESNYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1835
Cdd:CHL00206  1741 IHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1820

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1836 GFHLEKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGR 1915
Cdd:CHL00206  1821 GFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGR 1900

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1916 AVAQNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPGPDEKTRITSYG 1995
Cdd:CHL00206  1901 AVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYG 1980

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1996 FIENDSDLVHGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLYEKYESEFEEGEGEG 2075
Cdd:CHL00206  1981 LVENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGESEG 2060

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 2076 VLDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYLAGSFRGRRIIYDEKYELQENDSEFLQSGTMQYQRRDR 2155
Cdd:CHL00206  2061 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDR 2140

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 2156 SSKEQGFFRISQFIWDPADPLFFLFKEQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQR 2235
Cdd:CHL00206  2141 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHR 2220

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1381391262 2236 QRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDRMTKTLLKKRWLFPDEMKIGFM 2296
Cdd:CHL00206  2221 QRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1496 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2751.84  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRILSILLLRNSQGSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262   81 VLFLVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWPISLQNCAQFH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVKVTDSSQLNGSSDQF 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNNLLPEES 480
Cdd:pfam05695  401 RDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:pfam05695  481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  561 LGYDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFEAEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:pfam05695  561 PGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  641 DSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDPKPKRVVFASNNIIEAVNQYR 720
Cdd:pfam05695  641 DSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  721 LIRNLIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 800
Cdd:pfam05695  721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  801 SRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVMFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLRFF 880
Cdd:pfam05695  799 SRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFL 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  881 lskllrflSKLLLFLSNSLPFLFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 960
Cdd:pfam05695  879 --------SKFLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  961 KFLINGGTISPFLFNKIPKWIIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1040
Cdd:pfam05695  951 KFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1041 HHFCFYCNKRFPFYVEKAHLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1120
Cdd:pfam05695 1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1121 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNRSDSEEKSLHQYLNFNSNMGLIHTP 1200
Cdd:pfam05695 1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1201 CSEKYLQRKKRSLRLKSLKRCVDKGQLDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSS 1280
Cdd:pfam05695 1189 CSEKYLPSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSS 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1281 QKFVSIFHDIMHGLDISWRILQKKLCLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISIHLRSPNVREVLYSILFLL 1360
Cdd:pfam05695 1269 QKFVSIFHDIMHGSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPLISTHLRSPNVREFFYSILFLL 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1361 LVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRG--S 1438
Cdd:pfam05695 1349 LVAGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGsaS 1428

                         1450      1460      1470      1480      1490
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1381391262 1439 GGNMLWGGDPAYGVKSIRSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTS 1496
Cdd:pfam05695 1429 GGNMLLGGGPAYGVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1632-1816 2.29e-76

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 250.37  E-value: 2.29e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1632 KPFSLRLALSPSRSVLVIGSIGIGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIddsddidasndidreld 1711
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDG----------------- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1712 telelltmmnaltmDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN-------ESNYLALGLLVNSLSRDCERCS 1784
Cdd:cd19505     64 --------------MLILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSS 129

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1381391262 1785 TRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1816
Cdd:cd19505    130 TRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1637-1891 6.19e-07

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 53.86  E-value: 6.19e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1637 RLALSPSRSVLVIGSIGIGRSYLVKYLATNSYVPFITV----FLNKFLDNKPKgffiddididdsddidasndIDRELdt 1712
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgseLVSKYIGEGAR--------------------NVREV-- 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1713 elelltmmnaltmdmmseidrfyitlqFELAKAMSPCIIWIPNI--------HDLDVNESNYLalgllVNSL-------- 1776
Cdd:COG1222    164 ---------------------------FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT-----VNQLlaeldgfe 211

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1777 SRDcercstrNILVIASTHIPQKVDPALIAPNKLNtcikiRRLLIP----QQRKHFFTLsYTRGFHLEKKMFhtngFESI 1852
Cdd:COG1222    212 SRG-------DVLIIAATNRPDLLDPALLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLADDVD----LDKL 274

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1381391262 1853 ---TMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1891
Cdd:COG1222    275 aklTEGFSGADLKAIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2296 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4141.11  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRILSILLLRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262   81 VLFLVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWPISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVKVTDSSQLNGSSDQF 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNNLLPEES 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  561 LGYDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFEAEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:CHL00206   561 PGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  641 DSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDPKPKRVVFASNNIIEAVNQYR 720
Cdd:CHL00206   641 DSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  721 LIRNLIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 800
Cdd:CHL00206   721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  801 SRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVMFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLRFF 880
Cdd:CHL00206   799 SRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLLFL 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  881 lskllrflSKLLLFLSNSLPFLFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 960
Cdd:CHL00206   879 --------SKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  961 KFLINGGTISPFLFNKIPKWIIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1040
Cdd:CHL00206   951 KFLINGGTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1041 HHFCFYCNKRFPFYVEKAHLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1120
Cdd:CHL00206  1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1121 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNRSDSEEKSLHQYLNFNSNMGLIHTP 1200
Cdd:CHL00206  1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1201 CSEKYL---QRKKRSLRlksLKRCVDKGQLDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRIL 1277
Cdd:CHL00206  1189 CSEKYLpseKRKKRSLC---LKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPIL 1265

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1278 SSSQKFVSIFHDIMHGLDISWRILQKKL--CLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISIHLRSPNVREVLYS 1355
Cdd:CHL00206  1266 SSSQKFVSIFHDIMHGSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYS 1345

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1356 ILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEI 1435
Cdd:CHL00206  1346 ILFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEI 1425

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1436 RGSGGNMLWGGDPAYGVKSIRSKKKDLKINFidiIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWID 1515
Cdd:CHL00206  1426 RGSGGNMLLGGGPAYGVKSIRSKKKYLNINL---IDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWID 1502

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1516 DKIESWVANSDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHNDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEF 1595
Cdd:CHL00206  1503 DKIESWVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEF 1582

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1596 NTSCLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRSVLVIGSIGIGRSYLVKYLATNSYVPFITVF 1675
Cdd:CHL00206  1583 NTSCLAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVF 1662

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1676 LNKFLDNKPKGFFIDDIDIDDSDDIDASNDIDRELDTelELLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIIWIPN 1755
Cdd:CHL00206  1663 LNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT--ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPN 1740

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1756 IHDLDVNESNYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1835
Cdd:CHL00206  1741 IHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1820

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1836 GFHLEKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGR 1915
Cdd:CHL00206  1821 GFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGR 1900

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1916 AVAQNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPGPDEKTRITSYG 1995
Cdd:CHL00206  1901 AVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYG 1980

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1996 FIENDSDLVHGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLYEKYESEFEEGEGEG 2075
Cdd:CHL00206  1981 LVENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGESEG 2060

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 2076 VLDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYLAGSFRGRRIIYDEKYELQENDSEFLQSGTMQYQRRDR 2155
Cdd:CHL00206  2061 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDR 2140

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 2156 SSKEQGFFRISQFIWDPADPLFFLFKEQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQR 2235
Cdd:CHL00206  2141 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHR 2220

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1381391262 2236 QRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDRMTKTLLKKRWLFPDEMKIGFM 2296
Cdd:CHL00206  2221 QRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1496 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2751.84  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRILSILLLRNSQGSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262   81 VLFLVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWPISLQNCAQFH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  321 MWQFHQDLFVSWGKNPHESDFFRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVKVTDSSQLNGSSDQF 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  401 IDPFDSISNEDSEYHTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNNLLPEES 480
Cdd:pfam05695  401 RDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  481 EEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSD 560
Cdd:pfam05695  481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSD 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  561 LGYDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFEAEERFQEMADLFTLSITEPDLVYHKGFAFSI 640
Cdd:pfam05695  561 PGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAFSI 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  641 DSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDPKPKRVVFASNNIIEAVNQYR 720
Cdd:pfam05695  641 DSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDPKPKIVVFASNNIMEAVNQYR 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  721 LIRNLIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKSQKKWFDPLIFL 800
Cdd:pfam05695  721 LIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  801 SRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVMFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLRFF 880
Cdd:pfam05695  799 SRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFL 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  881 lskllrflSKLLLFLSNSLPFLFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKS 960
Cdd:pfam05695  879 --------SKFLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKS 950

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262  961 KFLINGGTISPFLFNKIPKWIIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNP 1040
Cdd:pfam05695  951 KFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1030

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1041 HHFCFYCNKRFPFYVEKAHLNNSDFTYGQFLTILFIHNKIFSSCGGKKKHAFLERDTISPssIESQVSNIFISNDFPQSG 1120
Cdd:pfam05695 1031 HHFCFYCNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSG 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1121 DERYNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNRSDSEEKSLHQYLNFNSNMGLIHTP 1200
Cdd:pfam05695 1109 DETYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTP 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1201 CSEKYLQRKKRSLRLKSLKRCVDKGQLDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSS 1280
Cdd:pfam05695 1189 CSEKYLPSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSS 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1281 QKFVSIFHDIMHGLDISWRILQKKLCLPQRNLISEISSKSLHNLLLSEEMIHRNNESSLISIHLRSPNVREVLYSILFLL 1360
Cdd:pfam05695 1269 QKFVSIFHDIMHGSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPLISTHLRSPNVREFFYSILFLL 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1361 LVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRG--S 1438
Cdd:pfam05695 1349 LVAGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGsaS 1428

                         1450      1460      1470      1480      1490
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1381391262 1439 GGNMLWGGDPAYGVKSIRSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTS 1496
Cdd:pfam05695 1429 GGNMLLGGGPAYGVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1632-1816 2.29e-76

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 250.37  E-value: 2.29e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1632 KPFSLRLALSPSRSVLVIGSIGIGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIddsddidasndidreld 1711
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDG----------------- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1712 telelltmmnaltmDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN-------ESNYLALGLLVNSLSRDCERCS 1784
Cdd:cd19505     64 --------------MLILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSS 129

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1381391262 1785 TRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1816
Cdd:cd19505    130 TRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 1633-1816 1.25e-08

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 56.14  E-value: 1.25e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1633 PFSLRLALSPSRSVLVIGSIGIGRSYLVKYLATNSYVPFITVflnkfldnkpKGFfiddididdsddidasndidreldt 1712
Cdd:cd19481     16 SRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVV----------KLS------------------------- 60

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1713 elELLTMMNALTMDMMSEIdrfyitlqFELAKAMSPCIIWIPNIHDL-----DVNESNYL--ALGLLVNSLSRDCERcst 1785
Cdd:cd19481     61 --SLLSKYVGESEKNLRKI--------FERARRLAPCILFIDEIDAIgrkrdSSGESGELrrVLNQLLTELDGVNSR--- 127

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1381391262 1786 RNILVIASTHIPQKVDPALIAPNKLNTCIKI 1816
Cdd:cd19481    128 SKVLVIAATNRPDLLDPALLRPGRFDEVIEF 158
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 1646-1805 3.89e-07

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 51.05  E-value: 3.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1646 VLVIGSIGIGRSYLVKYLATNSYVPFITV----FLNKFLDNKPKGFfiddididdsddidasndidRELdtelelltmmn 1721
Cdd:pfam00004    1 LLLYGPPGTGKTTLAKAVAKELGAPFIEIsgseLVSKYVGESEKRL--------------------REL----------- 49

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1722 altmdmmseidrfyitlqFELAKAMSPCIIWIPNIHDL--DVNESNYLALGLLVNSL--SRDCERCSTRNILVIASTHIP 1797
Cdd:pfam00004   50 ------------------FEAAKKLAPCVIFIDEIDALagSRGSGGDSESRRVVNQLltELDGFTSSNSKVIVIAATNRP 111


                   ....*...
gi 1381391262 1798 QKVDPALI 1805
Cdd:pfam00004  112 DKLDPALL 119
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1637-1891 6.19e-07

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 53.86  E-value: 6.19e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1637 RLALSPSRSVLVIGSIGIGRSYLVKYLATNSYVPFITV----FLNKFLDNKPKgffiddididdsddidasndIDRELdt 1712
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgseLVSKYIGEGAR--------------------NVREV-- 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1713 elelltmmnaltmdmmseidrfyitlqFELAKAMSPCIIWIPNI--------HDLDVNESNYLalgllVNSL-------- 1776
Cdd:COG1222    164 ---------------------------FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT-----VNQLlaeldgfe 211

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1777 SRDcercstrNILVIASTHIPQKVDPALIAPNKLNtcikiRRLLIP----QQRKHFFTLsYTRGFHLEKKMFhtngFESI 1852
Cdd:COG1222    212 SRG-------DVLIIAATNRPDLLDPALLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLADDVD----LDKL 274

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1381391262 1853 ---TMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1891
Cdd:COG1222    275 aklTEGFSGADLKAIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
RecA-like_CDC48_r2-like cd19511
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ...
 1630-1814 3.33e-05

second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410919 [Multi-domain]  Cd Length: 159  Bit Score: 46.12  E-value: 3.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1630 HGKPFSlRLALSPSRSVLVIGSIGIGRSYLVKYLATNSYVPFITVflnkfldnkpKGffiddididdsddidasndidre 1709
Cdd:cd19511     15 HPDAFK-RLGIRPPKGVLLYGPPGCGKTLLAKALASEAGLNFISV----------KG----------------------- 60

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381391262 1710 ldteLELLTMMNALTMDMMSEIdrfyitlqFELAKAMSPCIIWIPNIHDLDVNESNYLALGL---LVNSLSRDCERCST- 1785
Cdd:cd19511     61 ----PELFSKYVGESERAVREI--------FQKARQAAPCIIFFDEIDSLAPRRGQSDSSGVtdrVVSQLLTELDGIESl 128

                          170       180
                   ....*....|....*....|....*....
gi 1381391262 1786 RNILVIASTHIPQKVDPALIAPNKLNTCI 1814
Cdd:cd19511    129 KGVVVIAATNRPDMIDPALLRPGRLDKLI 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH