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Conserved domains on  [gi|1488175479|ref|YP_009472128|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-100 3.37e-26

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440477  Cd Length: 99  Bit Score: 92.82  E-value: 3.37e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   1 MDLIKYFTFSMIIFILGIWGILLnRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIF 80
Cdd:COG0713     1 IPLEHYLILAAILFAIGLYGVLT-RRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAII 79

                          90       100
                  ....*....|....*....|
gi 1488175479  81 VITFRVRGTIAVEFINSIQG 100
Cdd:COG0713    80 VALYRNRGTIDVDDLNELKG 99
 
Name Accession Description Interval E-value
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-100 3.37e-26

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 92.82  E-value: 3.37e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   1 MDLIKYFTFSMIIFILGIWGILLnRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIF 80
Cdd:COG0713     1 IPLEHYLILAAILFAIGLYGVLT-RRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAII 79

                          90       100
                  ....*....|....*....|
gi 1488175479  81 VITFRVRGTIAVEFINSIQG 100
Cdd:COG0713    80 VALYRNRGTIDVDDLNELKG 99
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-100 7.11e-26

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 92.16  E-value: 7.11e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   1 MDLIKYFTFSMIIFILGIWGILLnRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIF 80
Cdd:PRK05715    2 IPLQHYLILAAILFCIGLVGLLL-RRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAIL 80

                          90       100
                  ....*....|....*....|
gi 1488175479  81 VITFRVRGTIAVEFINSIQG 100
Cdd:PRK05715   81 LQLYRNRGTIDVDDLNELKG 100
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
6-100 1.51e-16

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 68.36  E-value: 1.51e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   6 YFTFSMIIFILGIWGILLnRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIFVITFR 85
Cdd:pfam00420   2 YLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYR 80

                          90
                  ....*....|....*
gi 1488175479  86 VRGTIAVEFINSIQG 100
Cdd:pfam00420  81 THGTDDVDSLNLLKG 95
 
Name Accession Description Interval E-value
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-100 3.37e-26

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 92.82  E-value: 3.37e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   1 MDLIKYFTFSMIIFILGIWGILLnRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIF 80
Cdd:COG0713     1 IPLEHYLILAAILFAIGLYGVLT-RRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAII 79

                          90       100
                  ....*....|....*....|
gi 1488175479  81 VITFRVRGTIAVEFINSIQG 100
Cdd:COG0713    80 VALYRNRGTIDVDDLNELKG 99
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-100 7.11e-26

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 92.16  E-value: 7.11e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   1 MDLIKYFTFSMIIFILGIWGILLnRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIF 80
Cdd:PRK05715    2 IPLQHYLILAAILFCIGLVGLLL-RRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAIL 80

                          90       100
                  ....*....|....*....|
gi 1488175479  81 VITFRVRGTIAVEFINSIQG 100
Cdd:PRK05715   81 LQLYRNRGTIDVDDLNELKG 100
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 5-100 1.12e-22

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 83.93  E-value: 1.12e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   5 KYFTFSMIIFILGIWGILLNRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIFVITF 84
Cdd:MTH00180    4 EYLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYY 83

                          90
                  ....*....|....*.
gi 1488175479  85 RVRGTIAVEFINSIQG 100
Cdd:MTH00180   84 RIRGTIAVKSLNLLRG 99
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 3-100 6.88e-18

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 71.63  E-value: 6.88e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   3 LIKYFTFSMIIFILGIWGILLNRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIFVI 82
Cdd:MTH00001    2 YYKYLILVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVA 81

                          90
                  ....*....|....*...
gi 1488175479  83 TFRVRGTIAVEFINSIQG 100
Cdd:MTH00001   82 YYRIRGTISLKSLNSLRG 99
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
6-100 1.51e-16

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 68.36  E-value: 1.51e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   6 YFTFSMIIFILGIWGILLnRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIFVITFR 85
Cdd:pfam00420   2 YLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYR 80

                          90
                  ....*....|....*
gi 1488175479  86 VRGTIAVEFINSIQG 100
Cdd:pfam00420  81 THGTDDVDSLNLLKG 95
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-98 1.09e-14

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 63.48  E-value: 1.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   1 MDLIKYFTFSMIIFILGIWGiLLNRRNILIMLMSIELMLLAVNLNFLVFSVSLD--DMMGQVFALLVLTVAAAESAIGLA 78
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYG-LITSRNMVRALMCLELILNAVNINFVTFSDFFDsrQLKGDIFSIFVIAIAAAEAAIGLA 79

                          90       100
                  ....*....|....*....|
gi 1488175479  79 IFVITFRVRGTIAVEFINSI 98
Cdd:CHL00015   80 IVSSIYRNRKSTRINQSNLL 99
ND4L MTH00192
NADH dehydrogenase subunit 4L; Provisional
 6-100 2.83e-11

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177240  Cd Length: 99  Bit Score: 54.93  E-value: 2.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   6 YFTFSMIIFILGIWGILLNRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIFVITFR 85
Cdd:MTH00192    5 YLLVSIILFTTGVSGIIINKNNIILILMSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFR 84

                          90
                  ....*....|....*
gi 1488175479  86 VRGTIAVEFINSIQG 100
Cdd:MTH00192   85 LTGTITIKALNLLRG 99
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 6-89 5.20e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 41.10  E-value: 5.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   6 YFTFSMIiFILGIWGILLNRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIFVITFR 85
Cdd:MTH00126    5 HFSFSSA-FILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVATAR 83


                  ....
gi 1488175479  86 VRGT 89
Cdd:MTH00126   84 THGT 87
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 7-99 5.55e-05

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 38.36  E-value: 5.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   7 FTFSMIIFILGIWGILLNRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIFVITFRV 86
Cdd:MTH00043    5 LIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVLLSRN 84

                          90
                  ....*....|...
gi 1488175479  87 RGTIAVEFINSIQ 99
Cdd:MTH00043   85 HNSDLVASLNLLQ 97
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-89 1.12e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 37.90  E-value: 1.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   1 MDLIKYFTFSMiiFILGIWGILLNRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIF 80
Cdd:MTH00125    1 MTPTHFSLYTA--FMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALL 78


                  ....*....
gi 1488175479  81 VITFRVRGT 89
Cdd:MTH00125   79 VATTRTHGS 87
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 6-89 1.14e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 37.66  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488175479   6 YFTFSMIiFILGIWGILLNRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIFVITFR 85
Cdd:MTH00067    5 YFTFYSA-FLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVATTR 83


                  ....
gi 1488175479  86 VRGT 89
Cdd:MTH00067   84 THGT 87
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 6-81 5.04e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 33.20  E-value: 5.04e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1488175479   6 YFTFSMIIFILGIWGILLNRRNILIMLMSIELMLLAVNLNFLVFSVSLDDMMgqVFALLVLTVAAAESAIGLAIFV 81
Cdd:MTH00162    3 MLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYEL--YFLLFFLTFSVCEGALGLSILV 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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