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Conserved domains on  [gi|1369121042|ref|YP_009468406|]
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NADH-plastoquinone oxidoreductase subunit 4L (chloroplast) [Lamarckia aurea]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 4L( domain architecture ID 10000006)

NAD(P)H-quinone oxidoreductase subunit 4L (ND4L) is part of the chloroplast NDH complex that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic and in the chloroplast respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-100 8.09e-47

NADH dehydrogenase subunit 4L


:

Pssm-ID: 176958  Cd Length: 101  Bit Score: 145.15  E-value: 8.09e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369121042   1 MFELVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSINLNLVTFSDLFDSRQLKGDIFAIFVIALAAAEAAIGLSIL 80
Cdd:CHL00015    2 MLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAIV 81

                          90       100
                  ....*....|....*....|
gi 1369121042  81 SSIHRNRKSTRINQSNLLNN 100
Cdd:CHL00015   82 SSIYRNRKSTRINQSNLLKK 101
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-100 8.09e-47

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 145.15  E-value: 8.09e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369121042   1 MFELVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSINLNLVTFSDLFDSRQLKGDIFAIFVIALAAAEAAIGLSIL 80
Cdd:CHL00015    2 MLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAIV 81

                          90       100
                  ....*....|....*....|
gi 1369121042  81 SSIHRNRKSTRINQSNLLNN 100
Cdd:CHL00015   82 SSIYRNRKSTRINQSNLLKK 101
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 2-98 2.42e-20

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 77.80  E-value: 2.42e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369121042   2 FELVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSINLNLVTFSDLFDsrQLKGDIFAIFVIALAAAEAAIGLSILS 81
Cdd:COG0713     3 LEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLG--DLDGQVFALFVIAVAAAEVAVGLAIIV 80

                          90
                  ....*....|....*..
gi 1369121042  82 SIHRNRKSTRINQSNLL 98
Cdd:COG0713    81 ALYRNRGTIDVDDLNEL 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-98 1.39e-15

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 65.66  E-value: 1.39e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369121042   4 LVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSINLNLVTFSDLFDSrqLKGDIFAIFVIALAAAEAAIGLSILSSI 83
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRI 78

                          90
                  ....*....|....*
gi 1369121042  84 HRNRKSTRINQSNLL 98
Cdd:pfam00420  79 YRTHGTDDVDSLNLL 93
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-100 8.09e-47

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 145.15  E-value: 8.09e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369121042   1 MFELVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSINLNLVTFSDLFDSRQLKGDIFAIFVIALAAAEAAIGLSIL 80
Cdd:CHL00015    2 MLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAIV 81

                          90       100
                  ....*....|....*....|
gi 1369121042  81 SSIHRNRKSTRINQSNLLNN 100
Cdd:CHL00015   82 SSIYRNRKSTRINQSNLLKK 101
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
6-98 1.49e-20

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 78.68  E-value: 1.49e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369121042   6 LFLSVYLFSIGIYGLITSRNMVRALICLELILNSINLNLVTFSDLFDsrQLKGDIFAIFVIALAAAEAAIGLSILSSIHR 85
Cdd:PRK05715    8 LILAAILFCIGLVGLLLRRNAIVVLMSIELMLNAVNLNFVAFSSYLG--DLDGQVFAFFVITVAAAEAAIGLAILLQLYR 85

                          90
                  ....*....|...
gi 1369121042  86 NRKSTRINQSNLL 98
Cdd:PRK05715   86 NRGTIDVDDLNEL 98
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 2-98 2.42e-20

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 77.80  E-value: 2.42e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369121042   2 FELVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSINLNLVTFSDLFDsrQLKGDIFAIFVIALAAAEAAIGLSILS 81
Cdd:COG0713     3 LEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLG--DLDGQVFALFVIAVAAAEVAVGLAIIV 80

                          90
                  ....*....|....*..
gi 1369121042  82 SIHRNRKSTRINQSNLL 98
Cdd:COG0713    81 ALYRNRGTIDVDDLNEL 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-98 1.39e-15

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 65.66  E-value: 1.39e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369121042   4 LVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSINLNLVTFSDLFDSrqLKGDIFAIFVIALAAAEAAIGLSILSSI 83
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRI 78

                          90
                  ....*....|....*
gi 1369121042  84 HRNRKSTRINQSNLL 98
Cdd:pfam00420  79 YRTHGTDDVDSLNLL 93
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.53e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 40.02  E-value: 1.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369121042   1 MFELVLFLSVYLFSIGIYGLITSR-NMVRALICLELILNSINLNLVTFSDLFDSrqLKGDIFAIFVIALAAAEAAIGLSI 79
Cdd:MTH00180    1 MYYEYLTVGIILFILGVLGIVLNRsNLIIMLMSIELMLLAISLLFLINSVAIDN--LIGQIFTIMILTVAAAESAIGLAI 78

                          90
                  ....*....|....*....
gi 1369121042  80 LSSIHRNRKSTRINQSNLL 98
Cdd:MTH00180   79 LVAYYRIRGTIAVKSLNLL 97
PRK07375 PRK07375
Na+/H+ antiporter subunit C;
6-46 1.52e-03

Na+/H+ antiporter subunit C;


Pssm-ID: 236004  Cd Length: 112  Bit Score: 34.86  E-value: 1.52e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1369121042   6 LFLSVYLFSIGIYGLITSRNMVRALICLELILNSINLNLVT 46
Cdd:PRK07375    6 YALAIALLVIGLYGLIFKRNLLKKIIGLDVFQTGVNLFYIA 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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