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Conserved domains on  [gi|1238820461|ref|YP_009419772|]
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50S ribosomal protein L33 (plastid) [Pentaphylax euryoides]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10000089)

50S ribosomal protein L33

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpl33 CHL00104
ribosomal protein L33
 1-66 1.24e-41

ribosomal protein L33


:

Pssm-ID: 177033  Cd Length: 66  Bit Score: 129.32  E-value: 1.24e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1238820461  1 MAKGKDVRVTVILECISCVRNGVNKASTGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIKK 66
Cdd:CHL00104   1 MAKGKDVRVTVILECTSCVRNGVNKESTGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIKK 66
 
Name Accession Description Interval E-value
rpl33 CHL00104
ribosomal protein L33
 1-66 1.24e-41

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 129.32  E-value: 1.24e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1238820461  1 MAKGKDVRVTVILECISCVRNGVNKASTGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIKK 66
Cdd:CHL00104   1 MAKGKDVRVTVILECTSCVRNGVNKESTGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIKK 66
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 5-65 1.75e-13

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 57.86  E-value: 1.75e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1238820461  5 KDVRVTVILECISCvrngvnkastGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
Cdd:COG0267    2 AGMREKITLACTEC----------KGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
11-65 1.02e-12

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 55.90  E-value: 1.02e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1238820461 11 VILECISCVRngvnkastgiSRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
Cdd:pfam00471  2 ITLACTECKG----------RNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-65 4.27e-10

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 49.37  E-value: 4.27e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1238820461  1 MAKgKDVRVTVILECISCVRNgvnkastgisRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
Cdd:TIGR01023  1 MAK-KGARELIRLVCTACTGI----------NYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
rpl33 CHL00104
ribosomal protein L33
 1-66 1.24e-41

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 129.32  E-value: 1.24e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1238820461  1 MAKGKDVRVTVILECISCVRNGVNKASTGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIKK 66
Cdd:CHL00104   1 MAKGKDVRVTVILECTSCVRNGVNKESTGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIKK 66
rpmG PRK00595
50S ribosomal protein L33; Validated
 3-65 6.22e-14

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 59.05  E-value: 6.22e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1238820461  3 KGKDVRVTVILECISCvrngvnkastGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
Cdd:PRK00595   1 AAKGMRVKIKLESTEG----------TGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 5-65 1.75e-13

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 57.86  E-value: 1.75e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1238820461  5 KDVRVTVILECISCvrngvnkastGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
Cdd:COG0267    2 AGMREKITLACTEC----------KGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00504
50S ribosomal protein L33; Validated
 6-65 3.34e-13

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 57.23  E-value: 3.34e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238820461  6 DVRVTVILECISCvrngvnkastGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
Cdd:PRK00504   1 MMRKKITLACTEC----------KSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
Ribosomal_L33 pfam00471
Ribosomal protein L33;
11-65 1.02e-12

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 55.90  E-value: 1.02e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1238820461 11 VILECISCVRngvnkastgiSRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
Cdd:pfam00471  2 ITLACTECKG----------RNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-65 4.27e-10

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 49.37  E-value: 4.27e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1238820461  1 MAKgKDVRVTVILECISCVRNgvnkastgisRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
Cdd:TIGR01023  1 MAK-KGARELIRLVCTACTGI----------NYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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