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Conserved domains on  [gi|1238819773|ref|YP_009418961|]
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cytochrome b6-f complex subunit VIII ycf6 (plastid) [Barringtonia fusicarpa]

Protein Classification

cytochrome b6/f complex subunit VIII( domain architecture ID 10000003)

cytochrome b6/f complex subunit VIII (PetN) is a component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
petN CHL00009
cytochrome b6/f complex subunit VIII
 1-29 6.27e-07

cytochrome b6/f complex subunit VIII


:

Pssm-ID: 176952  Cd Length: 29  Bit Score: 39.31  E-value: 6.27e-07
                         10        20
                 ....*....|....*....|....*....
gi 1238819773  1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
Cdd:CHL00009   1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
 
Name Accession Description Interval E-value
petN CHL00009
cytochrome b6/f complex subunit VIII
 1-29 6.27e-07

cytochrome b6/f complex subunit VIII


Pssm-ID: 176952  Cd Length: 29  Bit Score: 39.31  E-value: 6.27e-07
                         10        20
                 ....*....|....*....|....*....
gi 1238819773  1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
Cdd:CHL00009   1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
PetN pfam03742
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 1-29 6.78e-06

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


Pssm-ID: 397695  Cd Length: 29  Bit Score: 36.60  E-value: 6.78e-06
                         10        20
                 ....*....|....*....|....*....
gi 1238819773  1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
Cdd:pfam03742  1 MDILTLGWAALLAVFTFSIAMVVWGRNGF 29
 
Name Accession Description Interval E-value
petN CHL00009
cytochrome b6/f complex subunit VIII
 1-29 6.27e-07

cytochrome b6/f complex subunit VIII


Pssm-ID: 176952  Cd Length: 29  Bit Score: 39.31  E-value: 6.27e-07
                         10        20
                 ....*....|....*....|....*....
gi 1238819773  1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
Cdd:CHL00009   1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
PetN pfam03742
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 1-29 6.78e-06

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


Pssm-ID: 397695  Cd Length: 29  Bit Score: 36.60  E-value: 6.78e-06
                         10        20
                 ....*....|....*....|....*....
gi 1238819773  1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
Cdd:pfam03742  1 MDILTLGWAALLAVFTFSIAMVVWGRNGF 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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