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Conserved domains on  [gi|1197513255|ref|YP_009370726|]
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ribosomal protein S13 (mitochondrion) [Eukaryota sp. BB2]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsM super family cl29922
Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S13 ...
 70-110 8.74e-14

Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S13 is part of the Pathway/BioSystem: Ribosome 30S subunit


The actual alignment was detected with superfamily member COG0099:

Pssm-ID: 439869  Cd Length: 125  Bit Score: 63.55  E-value: 8.74e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:COG0099    67 EGDLRREVRMDIKRLKDIGCYRGIRHRRGLPVRGQRTKTNA 107
 
Name Accession Description Interval E-value
RpsM COG0099
Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S13 ...
 70-110 8.74e-14

Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S13 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439869  Cd Length: 125  Bit Score: 63.55  E-value: 8.74e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:COG0099    67 EGDLRREVRMDIKRLKDIGCYRGIRHRRGLPVRGQRTKTNA 107
Ribosomal_S13 pfam00416
Ribosomal protein S13/S18; This family includes ribosomal protein S13 from prokaryotes and S18 ...
 70-110 1.23e-11

Ribosomal protein S13/S18; This family includes ribosomal protein S13 from prokaryotes and S18 from eukaryotes.


Pssm-ID: 425669  Cd Length: 107  Bit Score: 57.71  E-value: 1.23e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:pfam00416  65 EGDLRREVRADIERLKEIRCYRGLRHRRGLPVRGQRTKTNG 105
rpsM PRK05179
30S ribosomal protein S13; Validated
 70-110 8.20e-11

30S ribosomal protein S13; Validated


Pssm-ID: 235358  Cd Length: 122  Bit Score: 55.86  E-value: 8.20e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:PRK05179   67 EGDLRREVSMNIKRLMDIGCYRGLRHRRGLPVRGQRTKTNA 107
uS13_bact TIGR03631
ribosomal protein uS13, bacterial form; This model describes bacterial ribosomal protein S13, ...
 70-110 3.10e-10

ribosomal protein uS13, bacterial form; This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274688  Cd Length: 113  Bit Score: 54.04  E-value: 3.10e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:TIGR03631  65 EGDLRREVTLNIKRLMDIGCYRGLRHRRGLPVRGQRTKTNA 105
 
Name Accession Description Interval E-value
RpsM COG0099
Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S13 ...
 70-110 8.74e-14

Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S13 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439869  Cd Length: 125  Bit Score: 63.55  E-value: 8.74e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:COG0099    67 EGDLRREVRMDIKRLKDIGCYRGIRHRRGLPVRGQRTKTNA 107
Ribosomal_S13 pfam00416
Ribosomal protein S13/S18; This family includes ribosomal protein S13 from prokaryotes and S18 ...
 70-110 1.23e-11

Ribosomal protein S13/S18; This family includes ribosomal protein S13 from prokaryotes and S18 from eukaryotes.


Pssm-ID: 425669  Cd Length: 107  Bit Score: 57.71  E-value: 1.23e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:pfam00416  65 EGDLRREVRADIERLKEIRCYRGLRHRRGLPVRGQRTKTNG 105
rpsM PRK05179
30S ribosomal protein S13; Validated
 70-110 8.20e-11

30S ribosomal protein S13; Validated


Pssm-ID: 235358  Cd Length: 122  Bit Score: 55.86  E-value: 8.20e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:PRK05179   67 EGDLRREVSMNIKRLMDIGCYRGLRHRRGLPVRGQRTKTNA 107
uS13_bact TIGR03631
ribosomal protein uS13, bacterial form; This model describes bacterial ribosomal protein S13, ...
 70-110 3.10e-10

ribosomal protein uS13, bacterial form; This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274688  Cd Length: 113  Bit Score: 54.04  E-value: 3.10e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:TIGR03631  65 EGDLRREVTLNIKRLMDIGCYRGLRHRRGLPVRGQRTKTNA 105
rps13 CHL00137
ribosomal protein S13; Validated
 70-110 1.13e-09

ribosomal protein S13; Validated


Pssm-ID: 177059  Cd Length: 122  Bit Score: 52.72  E-value: 1.13e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTNA 110
Cdd:CHL00137   67 EGDLRRFESLNIKRLMEINCYRGRRHRLGLPVRGQRTRTNA 107
uS13_arch TIGR03629
ribosomal protein uS13, archaeal form; This model describes exclusively the archaeal ribosomal ...
 70-109 2.03e-08

ribosomal protein uS13, archaeal form; This model describes exclusively the archaeal ribosomal protein S13P. It excludes the homologous eukaryotic 40S ribosomal protein S18 and bacterial 30S ribosomal protein S13. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 213839  Cd Length: 144  Bit Score: 49.97  E-value: 2.03e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTN 109
Cdd:TIGR03629  92 GSDLDMTVREDINRMKKIRSYRGIRHELGLKVRGQRTKST 131
rps13p PRK04053
30S ribosomal protein S13P; Reviewed
 70-109 4.91e-08

30S ribosomal protein S13P; Reviewed


Pssm-ID: 235215  Cd Length: 149  Bit Score: 49.05  E-value: 4.91e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1197513255  70 ENNLKRYEEQQILNLIELRSYKGMRHSLGYPVRGQRTHTN 109
Cdd:PRK04053   97 GSDLILTVREDINRMKKIRSYRGIRHELGLKVRGQRTRST 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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