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Conserved domains on  [gi|1079489582|ref|YP_009309917|]
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ribosomal protein L23 (chloroplast) [Abeliophyllum distichum]

Protein Classification

50S ribosomal protein L23( domain architecture ID 10000025)

50S ribosomal protein L23 binds 23S rRNA and is essential for growth

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
rpl23 CHL00030
ribosomal protein L23
1-93 2.70e-61

ribosomal protein L23


:

Pssm-ID: 176971  Cd Length: 93  Bit Score: 180.88  E-value: 2.70e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079489582  1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ 80
Cdd:CHL00030   1 MDGIKYPVFTDKSIRLLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQ 80
                         90
                 ....*....|...
gi 1079489582 81 PGYSIPPLRKKRT 93
Cdd:CHL00030  81 PGYSIPLFREKRT 93
 
Name Accession Description Interval E-value
rpl23 CHL00030
ribosomal protein L23
1-93 2.70e-61

ribosomal protein L23


Pssm-ID: 176971  Cd Length: 93  Bit Score: 180.88  E-value: 2.70e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079489582  1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ 80
Cdd:CHL00030   1 MDGIKYPVFTDKSIRLLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQ 80
                         90
                 ....*....|...
gi 1079489582 81 PGYSIPPLRKKRT 93
Cdd:CHL00030  81 PGYSIPLFREKRT 93
Ribosomal_L23 pfam00276
Ribosomal protein L23;
2-86 1.02e-26

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 93.27  E-value: 1.02e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079489582  2 DGIKYAVFTDKSIRLLGK-NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ 80
Cdd:pfam00276  1 DVIIKPVITEKSTALMEKnNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRFGRFVGRRSDWKKAIVTLA 80

                 ....*.
gi 1079489582 81 PGYSIP 86
Cdd:pfam00276 81 EGQKID 86
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
8-85 1.27e-17

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 70.48  E-value: 1.27e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1079489582  8 VFTDKSIRLLGK-NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSI 85
Cdd:COG0089    4 VITEKSTALAEKnNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKKKRFGRRVGKRSDWKKAIVTLAEGQKI 82
 
Name Accession Description Interval E-value
rpl23 CHL00030
ribosomal protein L23
1-93 2.70e-61

ribosomal protein L23


Pssm-ID: 176971  Cd Length: 93  Bit Score: 180.88  E-value: 2.70e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079489582  1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ 80
Cdd:CHL00030   1 MDGIKYPVFTDKSIRLLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQ 80
                         90
                 ....*....|...
gi 1079489582 81 PGYSIPPLRKKRT 93
Cdd:CHL00030  81 PGYSIPLFREKRT 93
Ribosomal_L23 pfam00276
Ribosomal protein L23;
2-86 1.02e-26

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 93.27  E-value: 1.02e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079489582  2 DGIKYAVFTDKSIRLLGK-NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ 80
Cdd:pfam00276  1 DVIIKPVITEKSTALMEKnNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRFGRFVGRRSDWKKAIVTLA 80

                 ....*.
gi 1079489582 81 PGYSIP 86
Cdd:pfam00276 81 EGQKID 86
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
8-85 1.27e-17

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 70.48  E-value: 1.27e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1079489582  8 VFTDKSIRLLGK-NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSI 85
Cdd:COG0089    4 VITEKSTALAEKnNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKKKRFGRRVGKRSDWKKAIVTLAEGQKI 82
rplW PRK05738
50S ribosomal protein L23; Reviewed
1-85 2.66e-17

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 69.73  E-value: 2.66e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079489582  1 MDGIKYAVFTDKSIRLLGK-NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITL 79
Cdd:PRK05738   1 YDVIKRPVITEKSTLLMEKqNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTL 80

                 ....*.
gi 1079489582 80 QPGYSI 85
Cdd:PRK05738  81 AEGQKI 86
rplW PRK12280
50S ribosomal protein L23; Reviewed
4-85 2.22e-15

50S ribosomal protein L23; Reviewed


Pssm-ID: 237035 [Multi-domain]  Cd Length: 158  Bit Score: 66.71  E-value: 2.22e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079489582   4 IKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGY 83
Cdd:PRK12280    7 IKKPILTEKSYSLMSKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRFPGFTNSYKKAYVTLAEGY 86

                  ..
gi 1079489582  84 SI 85
Cdd:PRK12280   87 SI 88
PRK14548 PRK14548
50S ribosomal protein L23P; Provisional
1-53 7.91e-05

50S ribosomal protein L23P; Provisional


Pssm-ID: 237750  Cd Length: 84  Bit Score: 37.53  E-value: 7.91e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1079489582  1 MDGIKYAVFTDKSIRLLGK-NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH 53
Cdd:PRK14548   2 YSIIKYPLVTEKAMNLIEKeNKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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