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NADH-plastoquinone oxidoreductase subunit 7 (chloroplast) [Solanum neorickii]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 902.14
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 1 MT A P T TRKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V P A TRKDLMIVNMGP H HPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 81 IT I N G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 IT V N A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 161 GGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIG RD EA L NWGLSGPMLRASGI E WDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIG GE EA I NWGLSGPMLRASGI Q WDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 241 S YDEFDW Q VQWQ R EGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE M RRFDR L KD P EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 C YDEFDW E VQWQ K EGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE A RRFDR E KD S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 813424322 321 LSKQELYVRVEAPKGELGIFLIGD Q SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD D SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 902.14
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 1 MT A P T TRKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V P A TRKDLMIVNMGP H HPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 81 IT I N G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 IT V N A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 161 GGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIG RD EA L NWGLSGPMLRASGI E WDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIG GE EA I NWGLSGPMLRASGI Q WDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 241 S YDEFDW Q VQWQ R EGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE M RRFDR L KD P EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 C YDEFDW E VQWQ K EGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE A RRFDR E KD S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 813424322 321 LSKQELYVRVEAPKGELGIFLIGD Q SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD D SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 587.81
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 7 RKDL M IV NMGPQHPS M HGVLRL IVT LDGE D VVD CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AITINGP 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T VVD AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAYVLAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 167 LP Y G WID K CLD F C DYF LTGVA EY QK L I T R N P IF LE R VE GVG IIGRDE A LNW G LS GP M LRASG IEW DLRK VDH Y ES YDE F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VLSAED A IAL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 247 WQ V QWQR EGD SLA RYLVR IG EM TE S IK II Q Q A L EGI P G GP YENLEMRRFDRL K DPEWNDF E YRFIS - K KPSPT F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 813424322 326 L Y VR VE A P K GELG IF L IG D QSVF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
1.20e-158
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 451.41
E-value: 1.20e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITINGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y VV RAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 169 YG W IDKCLD F CDY F LTGVAE Y QK L ITR N P I FLE R VE GVG IIGRDE AL N WGL S GPMLR A SGI E WD L RK VDH YE S YDE F D WQ 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG VVSAKD AL D WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 249 V QWQRE GD SLA RYL V R IG EM T ESIKII Q Q A LE GI P G GP yenlemrrfdr L K DP ewn DFEYRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP ----------- I K AD --- NPKLAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 321 L SKQ ------- E L YV RV E A PKGELG IFL I G D QSVF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
3.38e-141
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 402.53
E-value: 3.38e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP Y G WID K CLD F C DYF LTGVA EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 205 GVG IIGRDE AL NW G LS GPMLRASG IE WDLRK VDH Y ES YDE F D WQ V QWQR EGD SLA RYLVR IG EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSAED AL AL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 285 GP YENL emrrf D RLKDP -------- EWNDFEYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D QSVF P W R W KIR P 356
Cdd:pfam00346 161 GP VMAD ----- D PKIAL ppkeemkt SMEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A 233
250 260 270
....*....|....*....|....*....|....*..
gi 813424322 357 P G F I NLQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 234 P S F A NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 902.14
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 1 MT A P T TRKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V P A TRKDLMIVNMGP H HPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 81 IT I N G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 IT V N A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 161 GGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIG RD EA L NWGLSGPMLRASGI E WDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIG GE EA I NWGLSGPMLRASGI Q WDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 241 S YDEFDW Q VQWQ R EGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE M RRFDR L KD P EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 C YDEFDW E VQWQ K EGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE A RRFDR E KD S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 813424322 321 LSKQELYVRVEAPKGELGIFLIGD Q SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD D SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 735.39
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 1 M TAPT TR KDL M IV N M GP Q HPSMHGVLRLIVTLDGEDVVDCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLE TR TEP M VL N F GP H HPSMHGVLRLIVTLDGEDVVDCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 81 IT I N G PE Q L G NI Q VPKRASYIRVIMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE L IYDL F EAATG M R MM - H NYFR 159
Cdd:PRK07415 81 IT V N A PE K L A NI P VPKRASYIRVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N NYFR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 160 IGGVAADLPYGW ID KCLDFCDYF LTGVA EY Q KLIT R NPIF LE R V EG V G I I G R D EA L NWGLSGPMLRASG IE WDLRKVDHY 239
Cdd:PRK07415 161 IGGVAADLPYGW LE KCLDFCDYF GPKID EY E KLIT N NPIF RR R I EG L G T I S R E EA I NWGLSGPMLRASG VK WDLRKVDHY 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 240 E S YD E FDW Q V Q W QR EGD S LARY L VRI G EM T ES I KII Q QA LE GIPGGPYENLE MR R FDRL K DP EWN D F E Y RFIS KK PS PTF 319
Cdd:PRK07415 241 E C YD D FDW D V A W ET EGD C LARY R VRI E EM R ES V KII R QA CK GIPGGPYENLE AK R MAEG K KS EWN G F D Y QYVA KK VA PTF 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 813424322 320 ELSKQ ELYVR V E AP KGELGIF LI G DQS V F PWRWKIR PPG F I NLQILP Q L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KIPNG ELYVR L E SG KGELGIF IQ G NND V T PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 587.81
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 7 RKDL M IV NMGPQHPS M HGVLRL IVT LDGE D VVD CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AITINGP 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T VVD AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAYVLAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 167 LP Y G WID K CLD F C DYF LTGVA EY QK L I T R N P IF LE R VE GVG IIGRDE A LNW G LS GP M LRASG IEW DLRK VDH Y ES YDE F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VLSAED A IAL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 247 WQ V QWQR EGD SLA RYLVR IG EM TE S IK II Q Q A L EGI P G GP YENLEMRRFDRL K DPEWNDF E YRFIS - K KPSPT F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 813424322 326 L Y VR VE A P K GELG IF L IG D QSVF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
5-393
1.76e-172
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 486.59
E-value: 1.76e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 5 TTRKDLMIV N M GPQHP SM HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITIN 84
Cdd:PRK06075 1 EAEIRNYTL N F GPQHP AA HGVLRLI LE LDGE V VV RAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 85 GP E Q L GN I Q VP K RA S YIRV IM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LIY DL F EA A TG M RM M H N Y F R I GGV A 164
Cdd:PRK06075 81 AV E K L LG I E VP E RA Q YIRV LF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H A Y I R P GGV R 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 165 A DLP Y G WIDKCL DF C DYF LTGVAE Y QK L I T R N P I FLE R VE GVG IIGRDE AL NW G LS GPMLRASG IE WDLRK VDH YE S YDE 244
Cdd:PRK06075 161 R DLP D G LLEDIR DF L DYF PKRLDD Y ET L L T D N R I WKQ R LV GVG VVSKER AL AL G FT GPMLRASG VA WDLRK SQP YE V YDE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 245 F D WQ V QWQRE GD SLA RYLVR IG EM TE S IK II Q Q A L E -- GI P G GP Y -- ENLEM --- R R FDRLKDP E wndf EYRFIS K KPSP 317
Cdd:PRK06075 241 L D FD V PVGKN GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP V mv DDPKI app A R LEMKTSM E ---- ALIHHF K LVTE 316
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 813424322 318 T F ELSKQ E L Y VR VE A PKGE L G IF L IG D QSVF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 317 G F RVPAG E V Y AA VE S PKGE F G VY L VS D GGNK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
5-393
9.78e-160
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 453.39
E-value: 9.78e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 5 TT R KDL M IV N M GPQHPS M HGV L RL IVTL DGE DV V DCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITIN 84
Cdd:PRK12322 1 ML R TEE M LL N V GPQHPS T HGV F RL VLKI DGE II V EAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 85 GP E QLGNIQ VP K RA S Y I RVI ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE L I YD L FEAAT G M R MMH NY F RIGGV A 164
Cdd:PRK12322 81 AV E TMMGLE VP E RA E Y L RVI AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE M I IN L LNELC G A R LTF NY M RIGGV K 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 165 A D L P Y GWI D K CLD F CD Y FLTGV A E Y QK L I T R N P IFL E RV E GVGI IGRD EA LNWG LSG PM LR AS G IE WDLRK VDH Y ES YD E 244
Cdd:PRK12322 161 W D A P D GWI E K VKE F VP Y MREQL A G Y HD L V T G N E IFL N RV K GVGI YSAE EA ISYS LSG VN LR CT G VN WDLRK DEP Y SI YD R 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 245 FD WQVQWQRE GD SLA RY LV R IG E MTE S I KII Q QA L E GI P - G GP yenlemrrfdrlkdpewndfeyrf ISK K PSPTFELS K 323
Cdd:PRK12322 241 FD FDIPVGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKAP K 296
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 324 Q E L YVR V E A P K GE L G IFLIG D QSVF P W R W K I R P P G F I NLQILP Q L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 297 G E A YVR I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
1.20e-158
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 451.41
E-value: 1.20e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITINGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y VV RAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 169 YG W IDKCLD F CDY F LTGVAE Y QK L ITR N P I FLE R VE GVG IIGRDE AL N WGL S GPMLR A SGI E WD L RK VDH YE S YDE F D WQ 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG VVSAKD AL D WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 249 V QWQRE GD SLA RYL V R IG EM T ESIKII Q Q A LE GI P G GP yenlemrrfdr L K DP ewn DFEYRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP ----------- I K AD --- NPKLAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 321 L SKQ ------- E L YV RV E A PKGELG IFL I G D QSVF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
3.38e-141
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 402.53
E-value: 3.38e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP Y G WID K CLD F C DYF LTGVA EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 205 GVG IIGRDE AL NW G LS GPMLRASG IE WDLRK VDH Y ES YDE F D WQ V QWQR EGD SLA RYLVR IG EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSAED AL AL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 285 GP YENL emrrf D RLKDP -------- EWNDFEYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D QSVF P W R W KIR P 356
Cdd:pfam00346 161 GP VMAD ----- D PKIAL ppkeemkt SMEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A 233
250 260 270
....*....|....*....|....*....|....*..
gi 813424322 357 P G F I NLQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 234 P S F A NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
6.07e-136
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 407.24
E-value: 6.07e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 8 KDLM I V N M GPQHP SM HG VL R LIVT LDGE DV VD CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAITI N GP E 87
Cdd:PRK13292 402 EETL I L N L GPQHP GT HG II R FVLK LDGE EI VD MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAYV N SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 88 Q L GN I Q VP K RA S YIRV IML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNY FRIGGVA A DL 167
Cdd:PRK13292 482 T L CG I E VP D RA I YIRV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGGVA E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 168 P Y GW IDKCLD F CDY F LTGVA EY QK L I T R NPIF LE R VE GVG I I G RDEA LN WG L SGP M LRA S G IE WDLRK VDH Y ES YD E FD W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PGRLK EY ED L L T G NPIF KA R LK GVG V I T RDEA VE WG I SGP N LRA C G LA WDLRK KMP Y GG YD R FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 248 Q V QWQRE GD SL ARYLVR IG EM TE S IK I IQ QA LE G I PGG PYENLEM R ----- RF D R LKD P E WNDFEYRFISKK P S P tfel S 322
Cdd:PRK13292 642 E V PTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R yvlpq KR D T LKD I E SLIHHFVNVTRG P A P ---- P 717
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 813424322 323 K Q E L Y VRV EAPKGE L G I F LIG D QSVFPW R WK IR P P G F INL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 718 K G E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
9-393
2.60e-120
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 360.39
E-value: 2.60e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 9 D L M IV N M GP Q HPS M HG VL R LIVT LDGE DV VDC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AITINGP E Q 88
Cdd:PRK11742 190 D F M FL N L GP N HPS A HG AF R IVLQ LDGE EI VDC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPYVLAV E K 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 89 L GN I Q VP K R ASY IRV IML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNY FRIGGVA A DLP 168
Cdd:PRK11742 270 L AG I T VP D R VNV IRV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGGVA H DLP 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 169 Y GW i D KC L - D F C D YFLTGVA EY Q K LIT RN P I FLE R VE GV GIIGRD EAL N WG LS G PM LRA S GI EW D L RK VDH Y ES Y DE FD W 247
Cdd:PRK11742 350 R GW - D RL L r E F L D WMPKRLD EY E K AAL RN S I LKG R TQ GV AAYNAK EAL E WG VT G AG LRA T GI DF D V RK ARP Y SG Y EN FD F 428
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 248 Q V QWQRE GD SLA R YL V RIG EM TE S IK II Q Q A L EGI P G GP YENLEMRRFDRL K DPEWNDF E --- YR F ISKKPS P T fe LSKQ 324
Cdd:PRK11742 429 E V PVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP FKADHPLTTPPP K ERTLQHI E tli TH F LQVSWG P V -- MPAN 506
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 813424322 325 E LYVRV EA P KG ELGIF L IG D Q S VFPW R WK IR P P G F IN LQ IL P QLVKRMKLA D IMTI LGSID II M GE VDR 393
Cdd:PRK11742 507 E SFQMI EA T KG INSYY L TS D G S TMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
8-385
2.57e-102
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 311.14
E-value: 2.57e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 8 KDLMIVNM GP Q H PSMHGVLRLIVTLD GE DVV D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD Y latmf 77
Cdd:COG3261 120 EGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- 194
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 78 TE A I tingp E QLGN I Q VP K RA S Y I RVI M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNY 157
Cdd:COG3261 195 CQ A V ----- E KAAG I E VP P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGI 269
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 158 FRI GGV AA DL PYGWIDKC L DFC D YFLTG V A E YQK L ITRN P IF L E R VE G V G IIGRDE A LNW G LS GP ML RASG IEW D L R KVD 237
Cdd:COG3261 270 NVP GGV RR DL DPEQLKAI L ERL D ELEEE V K E LVD L FLND P SV L D R LV G T G VLSKED A RDL G AV GP VA RASG VDR D V R RDH 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424322 238 H Y ES YDE F D WQ V QWQR EGD SL AR Y LVR IG E MT ES IKI I Q QALE GI P G GP yenlemrrfdr LKD P EWNDFEYRFI skkpsp 317
Cdd:COG3261 350 P Y AA YDE L D FK V VTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP ----------- IRV P VPGLPPDGEG ------ 412
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 813424322 318 tfelskqel YV RVEAP K GEL GIFLIG D QSVFPW R W KIR P P G F I N LQI L PQLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 413 --------- LG RVEAP R GEL VHYVRT D GDGRLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
