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Conserved domains on  [gi|575669771|ref|YP_009000550|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Hemisus marmoratus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
3-92 7.12e-23

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00067:

Pssm-ID: 444937  Cd Length: 98  Bit Score: 84.27  E-value: 7.12e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  3 LIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNLTIF-PLMAPLTMLTMSACEASLGLSLMIALARSHG 81
Cdd:MTH00067  7 TFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLsYFSLPMFMLTFSACEASTGLALMVATTRTHG 86

                        90
                ....*....|.
gi 575669771 82 SDNLKTLNLLQ 92
Cdd:MTH00067 87 TDHLKNLNLLQ 97
 
Name Accession Description Interval E-value
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 3-92 7.12e-23

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 84.27  E-value: 7.12e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  3 LIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNLTIF-PLMAPLTMLTMSACEASLGLSLMIALARSHG 81
Cdd:MTH00067  7 TFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLsYFSLPMFMLTFSACEASTGLALMVATTRTHG 86

                        90
                ....*....|.
gi 575669771 82 SDNLKTLNLLQ 92
Cdd:MTH00067 87 TDHLKNLNLLQ 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
3-93 1.32e-05

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 39.85  E-value: 1.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771   3 LIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNLT-IFPLMAPLTMLTMSACEASLGLSLMIALARSHG 81
Cdd:pfam00420  4 LLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAdPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83

                         90
                 ....*....|..
gi 575669771  82 SDNLKTLNLLQW 93
Cdd:pfam00420 84 TDDVDSLNLLKG 95
 
Name Accession Description Interval E-value
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 3-92 7.12e-23

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 84.27  E-value: 7.12e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  3 LIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNLTIF-PLMAPLTMLTMSACEASLGLSLMIALARSHG 81
Cdd:MTH00067  7 TFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLsYFSLPMFMLTFSACEASTGLALMVATTRTHG 86

                        90
                ....*....|.
gi 575669771 82 SDNLKTLNLLQ 92
Cdd:MTH00067 87 TDHLKNLNLLQ 97
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 8-92 2.63e-19

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 75.00  E-value: 2.63e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  8 FFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNL-TIFPLMAPLTMLTMSACEASLGLSLMIALARSHGSDNLK 86
Cdd:MTH00126 12 FILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLeSTSFSAAPMLLLAFSACEASAGLALLVATARTHGTDRLQ 91


                ....*.
gi 575669771 87 TLNLLQ 92
Cdd:MTH00126 92 NLNLLQ 97
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 2-92 4.59e-17

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 69.49  E-value: 4.59e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  2 TLIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWP-NNLTIFPLMAPLTMLTMSACEASLGLSLMIALARSH 80
Cdd:MTH00125  6 FSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPiTTQTPSFTPMPIILLTFSACEAGTGLALLVATTRTH 85

                        90
                ....*....|..
gi 575669771 81 GSDNLKTLNLLQ 92
Cdd:MTH00125 86 GSDHLKNLNLLQ 97
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 2-92 7.58e-10

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 51.07  E-value: 7.58e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  2 TLIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWP-NNLTIFPLMAPLTMLTMSACEASLGLSLMIALARSH 80
Cdd:MTH00043  6 IIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSlNYGNFSNLSFSLLLLTLSACEASIGLSLMVLLSRNH 85

                        90
                ....*....|..
gi 575669771 81 GSDNLKTLNLLQ 92
Cdd:MTH00043 86 NSDLVASLNLLQ 97
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 1-91 2.60e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 49.56  E-value: 2.60e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  1 MTLIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWP-NNLTIFPLMAPLTMLTMSACEASLGLSLMIALARS 79
Cdd:MTH00181  2 MFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSlLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRT 81

                        90
                ....*....|..
gi 575669771 80 HGSDNLKTLNLL 91
Cdd:MTH00181 82 HGSDHLLKFNLL 93
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 4-92 1.09e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 42.61  E-value: 1.09e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  4 IMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNLTIFPL-MAPLTMLTMSACEASLGLSLMIALARSHGS 82
Cdd:MTH00107  8 IMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLAsMMPIILLVFAACEAAVGLALLVMVSNTYGT 87

                        90
                ....*....|
gi 575669771 83 DNLKTLNLLQ 92
Cdd:MTH00107 88 DYVQNLNLLQ 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
3-93 1.32e-05

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 39.85  E-value: 1.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771   3 LIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNLT-IFPLMAPLTMLTMSACEASLGLSLMIALARSHG 81
Cdd:pfam00420  4 LLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAdPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83

                         90
                 ....*....|..
gi 575669771  82 SDNLKTLNLLQW 93
Cdd:pfam00420 84 TDDVDSLNLLKG 95
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 1-93 2.87e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 39.19  E-value: 2.87e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  1 MTLIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNLTIFPLMApLTMLTMSACEASLGLSLMIALARSH 80
Cdd:MTH00188  6 ILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLS-LVLLTFAACEASVGLALLVSLIRSH 84

                        90
                ....*....|...
gi 575669771 81 GSDNLKTLNLLQW 93
Cdd:MTH00188 85 GSDYVSSLNLIKC 97
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 1-87 3.39e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 38.60  E-value: 3.39e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  1 MTLIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNLTiFPLMAPLTMLTMSACEASLGLSLMIALARSH 80
Cdd:MTH00162  4 LLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFN-YELYFLLFFLTFSVCEGALGLSILVSMIRSH 82


                ....*..
gi 575669771 81 GSDNLKT 87
Cdd:MTH00162 83 GNDYFSS 89
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 5-93 1.93e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 36.75  E-value: 1.93e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  5 MMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGL-SMWPNNLTIFPLMapLTMLTMSACEASLGLSLMIALARSHGSD 83
Cdd:MTH00149 10 LFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMfSSSGLISFSSYLF--LIILTFGACEASLGLSLLVSLIRLHGND 87

                        90
                ....*....|
gi 575669771 84 NLKTLNLLQW 93
Cdd:MTH00149 88 YVSSLSSLKF 97
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 1-88 4.36e-04

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 35.88  E-value: 4.36e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575669771  1 MTLIMMMFFLVMIGLSFHRLHLLSALLCLEGMMLVIFIGLSMWPNNLTIFPLMAPLTMLTMSACEASLGLSLMIALARSH 80
Cdd:MTH00013  5 LFILSISPFISMFNLSLQRKHLLMSLLSLEAMILSLALFIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLMTRSY 84


                ....*...
gi 575669771 81 GSDNLKTL 88
Cdd:MTH00013 85 GNDMLKSL 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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