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Conserved domains on  [gi|386800542|ref|YP_006303213|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Nectonemertes cf. mirabilis HC-2011]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 45-450 3.14e-114

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00150:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 417  Bit Score: 341.82  E-value: 3.14e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  45 GWFEVISFFFVDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSFFFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPT 124
Cdd:MTH00150  12 SYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPT 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 125 LFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFtdaFLFSFLFSFFLFFFLVLVFMVKIPI 204
Cdd:MTH00150  92 LLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISS---LRKLLSSMGLWGLLVFLAFLVKLPM 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 205 FFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYS 284
Cdd:MTH00150 169 YPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYS 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 285 SVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAG 364
Cdd:MTH00150 249 SVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAA 328

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 365 PPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHGDSLVSFSYFFSPKINFFLVFFLHFFPLYIFFF 444
Cdd:MTH00150 329 PPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLIL 408


                 ....*.
gi 386800542 445 SIEVLF 450
Cdd:MTH00150 409 KSDLLF 414
 
Name Accession Description Interval E-value
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 45-450 3.14e-114

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 341.82  E-value: 3.14e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  45 GWFEVISFFFVDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSFFFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPT 124
Cdd:MTH00150  12 SYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPT 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 125 LFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFtdaFLFSFLFSFFLFFFLVLVFMVKIPI 204
Cdd:MTH00150  92 LLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISS---LRKLLSSMGLWGLLVFLAFLVKLPM 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 205 FFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYS 284
Cdd:MTH00150 169 YPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYS 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 285 SVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAG 364
Cdd:MTH00150 249 SVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAA 328

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 365 PPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHGDSLVSFSYFFSPKINFFLVFFLHFFPLYIFFF 444
Cdd:MTH00150 329 PPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLIL 408


                 ....*.
gi 386800542 445 SIEVLF 450
Cdd:MTH00150 409 KSDLLF 414
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 104-406 1.21e-43

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 159.86  E-value: 1.21e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 104 CFILEDFFLFYIFFELSLVPTLFIILGWGYqPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDAFLFS 183
Cdd:COG1008  127 VFLALDLFLFYVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPL 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 184 FLFSFFLFFFLVLVfMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLfsMMNMFEMIFSDLMIMFVLWG 263
Cdd:COG1008  206 TAQLLLFLAFFIAF-AVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRF--ALPLFPEASAYFAPLLAALG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 264 --GVI-TGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVV 340
Cdd:COG1008  283 viGIIyGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADL 362

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386800542 341 KGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLF 406
Cdd:COG1008  363 GGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 97-380 1.56e-38

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 145.47  E-value: 1.56e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542   97 LGFVLVNCFILEDFFLFYIFFELSLVPTLFIILGWGyQPERLQAGLYMMMYTVSASLpfLFLLVFYGNIFCHfSFLFSWF 176
Cdd:TIGR01972 115 LEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSL--LMLLAILGLYFLG-GGTFDLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  177 TDAFLFSFLFSFFLFFFLVLVFM-VKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLfsMMNMFE---MIF 252
Cdd:TIGR01972 191 ELLNLPLPFGVQTWLFLAFFIAFaVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRF--NLPLFPdasLYF 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  253 SDLMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLL 332
Cdd:TIGR01972 269 APVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERA 348

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 386800542  333 GTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGI 380
Cdd:TIGR01972 349 HTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGS 396
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 109-383 6.38e-38

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 139.37  E-value: 6.38e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  109 DFFLFYIFFELSLVPTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDAFLFSFLFSF 188
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSGLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  189 FLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITG 268
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  269 FICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLS-SVGYDLLGTRSMYVVKGLLVFF 347
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTM 242

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 386800542  348 PYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGILSY 383
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAA 278
 
Name Accession Description Interval E-value
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 45-450 3.14e-114

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 341.82  E-value: 3.14e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  45 GWFEVISFFFVDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSFFFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPT 124
Cdd:MTH00150  12 SYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPT 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 125 LFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFtdaFLFSFLFSFFLFFFLVLVFMVKIPI 204
Cdd:MTH00150  92 LLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISS---LRKLLSSMGLWGLLVFLAFLVKLPM 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 205 FFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYS 284
Cdd:MTH00150 169 YPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYS 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 285 SVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAG 364
Cdd:MTH00150 249 SVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAA 328

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 365 PPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHGDSLVSFSYFFSPKINFFLVFFLHFFPLYIFFF 444
Cdd:MTH00150 329 PPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLIL 408


                 ....*.
gi 386800542 445 SIEVLF 450
Cdd:MTH00150 409 KSDLLF 414
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 52-419 1.50e-103

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 315.53  E-value: 1.50e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  52 FFFVDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSFFFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPTLFIILGW 131
Cdd:MTH00014  54 SLSSDMLSAPLITLTLWITALMILASFKIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGW 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 132 GYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTdafLFSFLFSFFLFFFLVLVFMVKIPIFFFHLWL 211
Cdd:MTH00014 134 GYQPERLQASFYLMIYTVTASLPLLMSILLIFYTNNSLSMLMSSME---PPSIYLMNLWWLITILAFMVKMPLYTVHLWL 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 212 PKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMGM 291
Cdd:MTH00014 211 PKAHVEAPVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGL 290

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 292 FLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLG 371
Cdd:MTH00014 291 MTAGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLL 370

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 386800542 372 AELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHGdSLVSFS 419
Cdd:MTH00014 371 SEIMLLTSILSSSLSTAILLAITSFLAAAYSLFLYTSTQHG-SPPSFM 417
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 50-451 9.39e-98

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 300.74  E-value: 9.39e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  50 ISFFFVDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSFFFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPTLFIIL 129
Cdd:MTH00205  50 SSSFSFDSLSLPLIMLSFWISLLMVLASYKVFKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILIL 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 130 GWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWftdAFLFSFLFSFFLFFFLVLVFMVKIPIFFFHL 209
Cdd:MTH00205 130 GWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSLSMFFNF---PLNFSDFYLFLYWIFLMLAFLVKLPMYFVHL 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 210 WLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHM 289
Cdd:MTH00205 207 WLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHM 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 290 GMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLN 369
Cdd:MTH00205 287 GLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLN 366

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 370 LGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHGDSLVSFSYFFSPKINFFLVFFLHFFPLYIFFFSIEVL 449
Cdd:MTH00205 367 LASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIF 446


                 ..
gi 386800542 450 FF 451
Cdd:MTH00205 447 IC 448
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 5-452 3.37e-96

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 296.30  E-value: 3.37e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542   5 LIFFLFGGSFFFLFSSNCWMFLSFFFFLLSFLFSFFFFSYGWFEVISFFFVDCLGGCLVMLSLWVCALMMVSSVRSFHLS 84
Cdd:MTH00163   4 FLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKKN 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  85 ESSFFFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGN 164
Cdd:MTH00163  84 NYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYN 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 165 IFCHFSFLFSWFtdaflfSFLFSFFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSM 244
Cdd:MTH00163 164 NSGSLSFFLLNF------FGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSF 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 245 MNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVL 324
Cdd:MTH00163 238 FSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCL 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 325 SSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLY 404
Cdd:MTH00163 318 ANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLY 397

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*...
gi 386800542 405 LFVSLNHGDSLVSFSYFFSPKINFFLVFFLHFFPLYIFFFSIEVLFFY 452
Cdd:MTH00163 398 LYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 44-412 6.61e-79

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 252.17  E-value: 6.61e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  44 YGWFEVISFFFVDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSF--FFSFCVFFLGFVLVNCFILEDFFLFYIFFELSL 121
Cdd:MTH00206  46 VGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKNEPINRqrIYITLLIVLQLFLILFFSSSNLLLFYILFEASL 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 122 VPTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDaflFSFLFSFFLFFFLVLVFMVK 201
Cdd:MTH00206 126 IPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFLQNSLGSLSLYILYFSK---LTTWNNNLWWLACILAFLVK 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 202 IPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLV 281
Cdd:MTH00206 203 LPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLI 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 282 AYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGN 361
Cdd:MTH00206 283 AYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLAN 362

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 386800542 362 MAGPPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHG 412
Cdd:MTH00206 363 LGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHG 413
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 46-419 5.19e-78

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 249.89  E-value: 5.19e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  46 WFEVISFFFVDCLGGCLVMLSLW---VCALMMVSSVRSFHLSESSFFFSFCVFFLGFVLVNCFILEdFFLFYIFFELSLV 122
Cdd:MTH00044  50 WHNLSLSLATDSLSSPLIILSCWlapLSLLASINHLSNNSPNNQRTFISLIIIILTALIITFSSLE-LILFYIAFETTLI 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 123 PTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDAFLFSFLFSFFLFFFLVLVFMVKI 202
Cdd:MTH00044 129 PTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKM 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 203 PIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIF-SDLMIMFVLWGGVITGFICFRQVDLKCLV 281
Cdd:MTH00044 209 PIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALI 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 282 AYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGN 361
Cdd:MTH00044 289 AYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAAN 368

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 386800542 362 MAGPPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHGDSLVSFS 419
Cdd:MTH00044 369 LGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWIS 426
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 109-377 1.58e-74

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 240.87  E-value: 1.58e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 109 DFFLFYIFFELSLVPTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDAFLFSFLFSF 188
Cdd:MTH00124 114 ELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNL 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 189 FLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMN-MFEMIFSDLMIMfVLWGGVIT 267
Cdd:MTH00124 194 LLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPpLSNTLHYPFLTL-ALWGALMT 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 268 GFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFF 347
Cdd:MTH00124 273 SLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLL 352

                        250       260       270
                 ....*....|....*....|....*....|
gi 386800542 348 PYLTMWWFIFVAGNMAGPPSLNLGAELFLL 377
Cdd:MTH00124 353 PLMTTWWLLANLTNMALPPTINLMGELTIM 382
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 45-407 7.22e-73

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 236.78  E-value: 7.22e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  45 GWFEVISFFFVDCLGGCLVMLSLWVCALMMVSSVRSFHL--SESSFFFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLV 122
Cdd:MTH00127  49 GWSSLNLYMATDPLSTPLLVLTCWLLPLMILASQNHTAPepINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLI 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 123 PTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDAFLFSFLFSFFLFFFLVLVFMVKI 202
Cdd:MTH00127 129 PTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKM 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 203 PIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVA 282
Cdd:MTH00127 209 PLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIA 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 283 YSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNM 362
Cdd:MTH00127 289 YSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANL 368

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 386800542 363 AGPPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFV 407
Cdd:MTH00127 369 ALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFL 413
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 51-412 1.66e-72

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 235.58  E-value: 1.66e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  51 SFFFVDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSF--FFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPTLFII 128
Cdd:MTH00068  54 KYFGIDQISSPLLILTCWLLPLMILASQNHLKNEPINRqrTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIII 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 129 LGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDAFLFSFLFSFFLFFFLVLVFMVKIPIFFFH 208
Cdd:MTH00068 134 TRWGNQEERLNAGTYFLFYTLAGSLPLLIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLH 213

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 209 LWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGH 288
Cdd:MTH00068 214 LWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSH 293

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 289 MGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSL 368
Cdd:MTH00068 294 MGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSP 373

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 386800542 369 NLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHG 412
Cdd:MTH00068 374 NLWGELTIMVSLFNWSNWTILITGLGTLITAAYTLYMFLMTQRG 417
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 53-412 9.18e-72

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 233.63  E-value: 9.18e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  53 FFVDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSF--FFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPTLFIILG 130
Cdd:MTH00110  56 FFSDSLSTPLLILTTWLLPLMLMASQHHLSKEPLTRkkLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITR 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 131 WGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDAFLFSFLFSFFLFFFLVLVFMVKIPIFFFHLW 210
Cdd:MTH00110 136 WGNQTERLNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLW 215

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 211 LPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMG 290
Cdd:MTH00110 216 LPKAHVEAPIAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 291 MFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNL 370
Cdd:MTH00110 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINL 375

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 386800542 371 GAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHG 412
Cdd:MTH00110 376 IGELFVIMSSFSWSNITIILMGLNMLITALYSLYMLITTQRG 417
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 104-406 1.21e-43

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 159.86  E-value: 1.21e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 104 CFILEDFFLFYIFFELSLVPTLFIILGWGYqPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDAFLFS 183
Cdd:COG1008  127 VFLALDLFLFYVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPL 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 184 FLFSFFLFFFLVLVfMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLfsMMNMFEMIFSDLMIMFVLWG 263
Cdd:COG1008  206 TAQLLLFLAFFIAF-AVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRF--ALPLFPEASAYFAPLLAALG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 264 --GVI-TGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVV 340
Cdd:COG1008  283 viGIIyGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADL 362

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386800542 341 KGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLF 406
Cdd:COG1008  363 GGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 97-406 6.32e-41

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 152.14  E-value: 6.32e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  97 LGFVLVNCFILEDFFLFYIFFELSLVPTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLF-LLVFYGNIFCHFSFLFSW 175
Cdd:MTH00204 121 LEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLgIFQLYSITGTTDYQILLN 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 176 FTdaflFSFLFSFFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRL-FSMMNMFEMIFSD 254
Cdd:MTH00204 201 IK----LPLSIQKWLLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFsWPLFPAASEYFAP 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 255 LMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGT 334
Cdd:MTH00204 277 LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHT 356

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386800542 335 RSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLF 406
Cdd:MTH00204 357 RLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 99-406 3.22e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 147.51  E-value: 3.22e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  99 FVLVNCFILEDFFLFYIFFELSLVPTLFIILGWGYQPERLQAGLYMMMYTVSASLpFLFLLVFygnifchfsFLFSWF-- 176
Cdd:MTH00217 120 ILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSV-FMLLGIF---------TLYSYAgt 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 177 TD-----AFLFSFLFSFFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRL-FSMMNMFEM 250
Cdd:MTH00217 190 TDyqalcCLKIEKELQYFIFLGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASE 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 251 IFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYD 330
Cdd:MTH00217 270 YFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYE 349

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386800542 331 LLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLF 406
Cdd:MTH00217 350 RHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 97-380 1.56e-38

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 145.47  E-value: 1.56e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542   97 LGFVLVNCFILEDFFLFYIFFELSLVPTLFIILGWGyQPERLQAGLYMMMYTVSASLpfLFLLVFYGNIFCHfSFLFSWF 176
Cdd:TIGR01972 115 LEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSL--LMLLAILGLYFLG-GGTFDLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  177 TDAFLFSFLFSFFLFFFLVLVFM-VKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLfsMMNMFE---MIF 252
Cdd:TIGR01972 191 ELLNLPLPFGVQTWLFLAFFIAFaVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRF--NLPLFPdasLYF 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  253 SDLMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLL 332
Cdd:TIGR01972 269 APVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERA 348

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 386800542  333 GTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGI 380
Cdd:TIGR01972 349 HTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGS 396
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 109-383 6.38e-38

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 139.37  E-value: 6.38e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  109 DFFLFYIFFELSLVPTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFTDAFLFSFLFSF 188
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSGLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  189 FLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITG 268
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  269 FICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLS-SVGYDLLGTRSMYVVKGLLVFF 347
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTM 242

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 386800542  348 PYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGILSY 383
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAA 278
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 101-379 3.19e-37

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 142.26  E-value: 3.19e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 101 LVNCFILEDFFLFYIFFELSLVPTLFIILGWGYqPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFSWFT-DA 179
Cdd:PRK05846 124 VIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYNATGTFDIADlLN 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 180 FLFSFLFSFFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLfsMMNMFEmIFSDLMIMF 259
Cdd:PRK05846 203 LPLPPGVQYWLFLAFFIAFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRF--SLPLFP-DASHEFAPI 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 260 VLWGGVI----TGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTR 335
Cdd:PRK05846 280 IITLGVIaiiyGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTR 359

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 386800542 336 SMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMG 379
Cdd:PRK05846 360 DIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLG 403
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 97-373 7.93e-36

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 138.52  E-value: 7.93e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  97 LGFVLVNCFILEDFFLFYIFFELSLVPTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLfSWF 176
Cdd:MTH00226 140 LEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYL-TLA 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 177 TDAFLFSFLFSFFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRL-FSMMNMFEMIFSDL 255
Cdd:MTH00226 219 SCSHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLsWPILPLGAQNLAPA 298

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 256 MIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTR 335
Cdd:MTH00226 299 VIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTR 378

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 386800542 336 SMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAE 373
Cdd:MTH00226 379 LIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGE 416
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 97-421 1.06e-32

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 128.10  E-value: 1.06e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  97 LGFVLVNCFILEDFFLFYIFFELSLVPTLFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLL--VFYGNIFCHFSFLFS 174
Cdd:MTH00094  71 LILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYlkNFFFFSLCYFDFFLS 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 175 WFtdaflfsflfsffLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNmfeMIFSD 254
Cdd:MTH00094 151 WE-------------MFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLN---FVYNN 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 255 LMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGT 334
Cdd:MTH00094 215 FWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKS 294

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 335 RSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGILSYSFSFFFFLGILGFLVGGYSLYLFVSLNHGDS 414
Cdd:MTH00094 295 RLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKK 374


                 ....*..
gi 386800542 415 LVSFSYF 421
Cdd:MTH00094 375 FSNFNNF 381
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 105-363 3.30e-30

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 122.45  E-value: 3.30e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 105 FILEDFFLFYIFFELSLVPTLFIILGWGYQpERLQAGLYMMMYTVSASLPFL---FLLVFYGNifcHFSFLFSWFTdAFL 181
Cdd:PRK12561 104 FLAQDLLLFFLMWELELVPVYLLISIWGGQ-KRLYAATKFILYTALASIFILvagLALALSGD---TFTFDLAELG-AKS 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 182 FSFLFSFFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRL-FSMMNMFEMIFSDLMIMFV 260
Cdd:PRK12561 179 YPLALELLLYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILG 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 261 LWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVV 340
Cdd:PRK12561 259 VVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNM 338

                        250       260
                 ....*....|....*....|...
gi 386800542 341 KGLLVFFPYLtmwWFIFVAGNMA 363
Cdd:PRK12561 339 GGLAKVMPKT---FALFTASSMA 358
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
105-344 6.72e-25

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 107.09  E-value: 6.72e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 105 FILEDFFLFYIFFELSLVPTLFIILGWGYQpERLQAGLYMMMYTvsASLPFLFLLVFYGNIFCHFSFLFSWFT-DAFLFS 183
Cdd:PRK06473 124 FLAQDLLLFFLFYELELIPLYLLIAIWGGQ-RRGYAATKFLLYT--AISGILILVSFLGLVWLSGASSFDYEPlRSHTLP 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 184 FLFSFFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLfsMMNMFEMIFSDLMIMFVLWG 263
Cdd:PRK06473 201 LSTQLLLLAPILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRF--GVGLFPEAWVYLAPWLATWA 278

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 264 --GVITGFIC-FRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVV 340
Cdd:PRK06473 279 vvSVLYGASCaIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVL 358


                 ....
gi 386800542 341 KGLL 344
Cdd:PRK06473 359 RGLL 362
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 53-382 6.88e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 100.22  E-value: 6.88e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  53 FFVDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSFFFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPTLFIILGWG 132
Cdd:COG0651   72 LVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGG 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 133 YqPERLQAGL-YMMMYTVSASLPFLFLLVFYGNI----FCHFSFLFSWFTDAFLFSFLFSFFLFFflvlvfMVKIPIFFF 207
Cdd:COG0651  152 T-KEALRAGLkYLILNLVGSALFLLGVGLLYGATgtlnMADLAARLAELDPGLLLAAFALLLVGF------GIKAALFPL 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 208 HLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMmnMFEMIFSDLMIMFVLWGGVITGFIC----FRQVDLKCLVAY 283
Cdd:COG0651  225 HFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTL--LFGADPALFLGTLLLVLGLLTMLVGalgaLAQRDLKRLLAY 302

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 284 SSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPyLTMWWFIFVAGNMA 363
Cdd:COG0651  303 SSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMP-LTAAAFLIGALALA 381

                        330       340
                 ....*....|....*....|
gi 386800542 364 G-PPSLNLGAELFLLMGILS 382
Cdd:COG0651  382 GlPPLSGFVSKWLLLQAALE 401
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 105-330 1.15e-22

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 100.55  E-value: 1.15e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 105 FILEDFFLFYIFFELSLVPTLFIILGWGYQpERLQAGLYMMMYTVSASLPFL---FLLVFYGNIFchfSFLFSWFTdAFL 181
Cdd:PRK02546 132 FAVQDMLLFFLAWELELIPVYLLLAIWGGK-KRQYAATKFILYTAGSSLFILlaaLAMAFYGDTP---TFDMTALA-AKD 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 182 FSFLFSFFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRL-FSMMNMFEMIFSDLMIMFV 260
Cdd:PRK02546 207 FGLGFQLLCYAGLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLG 286

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 261 LWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYD 330
Cdd:PRK02546 287 VVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYD 356
ndhD CHL00011
NADH dehydrogenase subunit 4
 105-382 4.45e-20

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 92.32  E-value: 4.45e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 105 FILEDFFLFYIFFELSLVPTLFIILGWGYQpERLQAGLYMMMYTVSASlpfLFLLV------FYGN-------------- 164
Cdd:CHL00011 129 FSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGS---IFLLIgvlgmgLYGSneptlnfetlanqs 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 165 ------IFCHFSFLFSWftdaflfsflfsfflffflvlvfMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGA 238
Cdd:CHL00011 205 ypvaleILFYIGFLIAY-----------------------AVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGL 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 239 MRLfsMMNMF---EMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHG 315
Cdd:CHL00011 262 IRI--NMELLphaHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHG 339

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386800542 316 LCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLMGILS 382
Cdd:CHL00011 340 FIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIIT 406
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
105-344 6.05e-19

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 89.00  E-value: 6.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 105 FILEDFFLFYIFFELSLVPTLFIILGWGYQpERLQAGLYMMMYTVSASLpfLFLLVFYGNIFCHFSFLFSWFTDAFLFSF 184
Cdd:PRK07363 124 LLAQNLLLFFLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGL--LVLAAFLGIVWLSGSTSFDYDAISTQNLS 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 185 LFSFFLFFFLVLVFM-VKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLfsMMNMFEMIFSDLMIMFVLWG 263
Cdd:PRK07363 201 LNTQLILLTGLLLGFgIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRF--GLQLFPQTWSLVAPGLAIIG 278

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 264 GVIT---GFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVV 340
Cdd:PRK07363 279 TISViygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVL 358


                 ....
gi 386800542 341 KGLL 344
Cdd:PRK07363 359 NGLM 362
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 201-377 2.30e-14

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 74.97  E-value: 2.30e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 201 KIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMM--NMFEMIFSDLMIMFVLWGGVITGFICFRQVDLK 278
Cdd:PRK06458 227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIdaAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIK 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 279 CLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVlsSVGYDLL--GTRSMYVVKGLLVFFPyLTMWWFI 356
Cdd:PRK06458 307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFF--ASGNVLQkyGTRDINVIRGLLKVSP-LTGWGLM 383

                        170       180
                 ....*....|....*....|.
gi 386800542 357 FVAGNMAGPPSLNLGAELFLL 377
Cdd:PRK06458 384 LGALAIAGMPPFGVFISEFLI 404
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-369 5.23e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 70.77  E-value: 5.23e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  55 VDCLGGCLVMLSLWVCALMMVSSVRSFHLSESSFFFSFCVFFLGFVLVNCFILEDFFLFYIFFELSLVPTLFIILGWGYQ 134
Cdd:PRK12667  80 VDLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDR 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 135 PERLQAGL-YMMMYTVSASLPFLFLLVFYGNI---------FCHFSFLFSWFTDAFLFSFLFSFFLFFFLVLVFMVKIPI 204
Cdd:PRK12667 160 GDAVEAAIkYALIGAVGTTLYFLALAFLYATFgtlnmadlsAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAI 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 205 FFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLF-------SMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDL 277
Cdd:PRK12667 240 FPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLytifgisPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDV 319

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 278 KCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMwWFIF 357
Cdd:PRK12667 320 KRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASF-AFLI 398

                        330
                 ....*....|..
gi 386800542 358 VAGNMAGPPSLN 369
Cdd:PRK12667 399 GALSLVGIPPLN 410
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 51-377 2.93e-12

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 68.03  E-value: 2.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542  51 SFFFVDCLGGCLVMLSLWVCalmmVSSVRSFHLSESSFFFSFCVFFLGFVLVnCFILEDFFLFYIFFELSLVPTLFIILG 130
Cdd:MTH00062  39 GLFIFDSLSFYLILLVLFLG----LYSQVMFYNLLSGVSRFFLFLSLIFSIL-CFCVNNSLLFWFFYELSIIPLLYLLFS 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 131 WGYQPERLQAGLYMMMYTVSASLPFLFLLVFYGNIFCHFSFLFswftdaFLFSFLFSFFLFFFLVLVFMVKIPIFFFHLW 210
Cdd:MTH00062 114 ESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSD------WGSDDSVSLIVYYVLSFMFITKVPLFPFHTW 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 211 LPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSmmnmfeMIFSDLMIMFVLWGGVITGFICF---RQVDLKCLVAYSSVG 287
Cdd:MTH00062 188 LPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCG------FIFSGSFLGYLFLCCLFSVFFLItacSELDGKRWLAFLSLS 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 288 HMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPS 367
Cdd:MTH00062 262 HILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPT 341

                        330
                 ....*....|
gi 386800542 368 LNLGAELFLL 377
Cdd:MTH00062 342 IQFFCEVFLV 351
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 201-322 2.11e-10

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 62.46  E-value: 2.11e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 201 KIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMM--NMFEMIFSDLMIMFVLWGGVITGFICFRQVDLK 278
Cdd:PRK08676 219 KSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLK 298

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 386800542 279 CLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLF 322
Cdd:PRK08676 299 KLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLF 342
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 199-382 3.89e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 58.35  E-value: 3.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 199 MVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRL----FSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQ 274
Cdd:PRK08375 213 ALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIyftvFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQ 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 275 VDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPyLTMWW 354
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMP-LTAAA 371

                        170       180
                 ....*....|....*....|....*....
gi 386800542 355 FIFVAGNMAG-PPSLNLGAELFLLMGILS 382
Cdd:PRK08375 372 FAVASLSLIGvPPTSGFVSKWYLVVGAVE 400
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 108-378 1.05e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 57.43  E-value: 1.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 108 EDFFLFYIFFELSLVPTLFIILGWGYQPERLQAGL-YMMMYTVSASLPFL-FLLVFYGNifchfsflFSWFTDAFLFSFL 185
Cdd:PRK08667 131 ANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIfYFVMTQLSTVFLMLgIIVLFIQT--------GSFELSPLGASAG 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 186 FSFFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGV 265
Cdd:PRK08667 203 ILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISAL 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 266 ITGFICFRQVDLKCLVAYSSVGHMGMFLAGIfsGFWWGWS-------------GGLLMMLGHGLCSSCLFVLSSVGYDLL 332
Cdd:PRK08667 283 LGVIYALKEHDLKGLLAYSSIENIGIILMGI--GLYVIFGvygldtlallalgGALFHSLNHALFKSLLFLTAGSVVHAT 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 386800542 333 GTRSMYVVKGLLVFFPYLTMWWFIFVAGNMAGPPSLNLGAELFLLM 378
Cdd:PRK08667 361 GTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK12650 PRK12650
DUF4040 family protein;
205-368 1.44e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 57.36  E-value: 1.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 205 FFFHLWLPKAHVEA-PVSGSMVLAGVLlKLGGYGAMRlFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAY 283
Cdd:PRK12650 225 FPFHFWLPEAMAAItPVSAFLHAAAVV-KAGIYLLLR-FSPVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAY 302

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 284 SSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYlTMWWFIFVAGNMA 363
Cdd:PRK12650 303 STVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPF-TFVSVTIAALSMA 381


                 ....*
gi 386800542 364 GPPSL 368
Cdd:PRK12650 382 AVPPL 386
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 105-322 2.22e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.54  E-value: 2.22e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 105 FILEDFFLFYIFFELSLVPTLFIILgWGYQPERLQAGLYMMMYTVSASLPFL--FLLVFYGNIFCHFSFLFSWFTDAFLF 182
Cdd:PRK08668 115 FLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAIGAYAMLYaiFLIYAKTGTFDFADISQGLINDTSTG 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 183 SFLFSFFLFFFLVlvfMVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGA---------MRLFSMMNMFEMIFS 253
Cdd:PRK08668 194 FALIVFLFLLAFG---VAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFllvlyvlpgTKLFSEFGTYRGVPL 270

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386800542 254 DLMIMFVLWG--GVITGFICFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLF 322
Cdd:PRK08668 271 FNYILAWLGNisIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 200-325 4.88e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 51.88  E-value: 4.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 200 VKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMfemifSDLMIMFVLWGGVITG-FICFRQVDLK 278
Cdd:PRK07234 196 VKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPG-----LDLIVRIFGVGTALLGvLFALLEKDLK 270

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 386800542 279 CLVAYSSVGHMGMFLAGifsgfwwGWSGGLLmMLGHGLCSSCLFVLS 325
Cdd:PRK07234 271 RMLAFSTISQLGFILAA-------PLVGGLY-ALAHGLVKSTLFLCA 309
PRK12646 PRK12646
DUF4040 family protein;
205-376 1.23e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 47.83  E-value: 1.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 205 FFFHLWLPKAhVEAPVSGSMVL-AGVLLKLGGYGAMRLFSMMNMfemifSDLMIMFVLWGGVIT----GFICFRQVDLKC 279
Cdd:PRK12646 227 FPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLGL-----SNMYIYIVTFVGLITmlfgSITALKQWDLKG 300

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 280 LVAYSSVGHMGMFLA--GIFSGFWWGWSG------------GLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLV 345
Cdd:PRK12646 301 ILAYSTISQLGMIMAmvGIGGGYAQHQQDaiasiyvfvlfaALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQ 380

                        170       180       190
                 ....*....|....*....|....*....|...
gi 386800542 346 FFPYLTMWWFIfVAGNMAGPPSLN--LGAELFL 376
Cdd:PRK12646 381 LFPKMNLVMTI-AALSMAGVPFLNgfLSKEMFL 412
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 200-335 1.57e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 47.07  E-value: 1.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 200 VKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMM---NMFEMIFSDLMIMFVLwGGVITGFICFRQVD 276
Cdd:PRK08377 218 VEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMqnaNGWSSVLKLVIIMATL-TVFFAELSALRQKN 296

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 277 LKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFV-LSSVGYDLLGTR 335
Cdd:PRK08377 297 VKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLaVGYVGITLGGTE 356
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 109-369 2.33e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 46.63  E-value: 2.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 109 DFFLFYIFFELSLVPTLFIILGWGYQPERLQAGL-YMMMYTVSASLPFLFLLVFYGNifcHFSFLFSWFTDAFLFSFLFS 187
Cdd:PRK08376 142 DLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIkYMFVGSLASSMVLLGIALLYGQ---YGTLNMAYLAVKMSENPTVV 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 188 -FFLFFFLVLVFMVKIPIFFFHLWLPKAHVEAPVSGSMVLagVLLKLGG-YGAMR-LFSMMNMFEMIFSDLMIMFVLwgG 264
Cdd:PRK08376 219 aKIALALFIAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARvLFSIYGPAINLATVGWVIIIL--G 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 265 VITGFI----CFRQVDLKCLVAYSSVGHMGMFLAGIFSGF------------WWGWSGGLLMMLGHGLCSSCLFVLSSVG 328
Cdd:PRK08376 295 CLTMFVgvamAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLaalgdpamasygEIALAGGIYHIVNHALYKALLFLTAGAV 374

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 386800542 329 YDLLGTRSMYVVKGLLVFFPYlTMWWFIFVAGNMAGPPSLN 369
Cdd:PRK08376 375 IYETGTRNLNELGGLARTMPK-TTIAFLIGAAAIVGLPPFN 414
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 201-368 3.12e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 43.01  E-value: 3.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 201 KIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFI-CFRQVDLKC 279
Cdd:PRK07691 222 KAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHYLILILALLTIIFGVIgAVAYFDIKK 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 280 LVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTmWWFIFVA 359
Cdd:PRK07691 302 IIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAA 380


                 ....*....
gi 386800542 360 GNMAGPPSL 368
Cdd:PRK07691 381 LSLAGIPPL 389
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-371 3.26e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.03  E-value: 3.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 103 NCFILEDFFLFYIFFELSLVPTlFIILGWGYQPERLQAGLYMMMYTVSASLPFLFLLVF-YGNI----FCHFSFLFSWFT 177
Cdd:PRK12665 126 NAFLAGDLFNLYVGFEILLVAS-YVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGIALvYAATgtlnMADLAVRLDELP 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 178 DAFLFSFLFSFFLFFFlvlvfmVKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYgamrlfSMMNMFEMIF-SDLM 256
Cdd:PRK12665 205 SGTRTALFAVLLVAFG------IKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVY------AIIRTHTLLFpGGGL 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 257 IMFVLWGGVITGFI----CFRQVDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLL 332
Cdd:PRK12665 273 DTLLMVVALLTMVVgilgAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQA 352

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 386800542 333 GTRSMYVVKGLLVFFPYLTMWWFIfvagnmagpPSLNLG 371
Cdd:PRK12665 353 GSSSLRRLGGLAKASPLLAVLFFV---------PALNLG 382
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 205-322 3.55e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 3.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 205 FFFHLWLPKAhVEAPVSGS-------MVLAGVLLklggygAMRLFSMMNMFEMIFsdlmiMFVLWGGVIT----GFICFR 273
Cdd:COG1009  228 FPLHFWLPDA-MEGPTPVSallhaatMVKAGVYL------LARLSPLFALSPVWL-----TVVAIIGAITalfaALIALA 295

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 386800542 274 QVDLKCLVAYSSVGHMGMFLAGIFSGfwwGWSGGLLMMLGHGLCSSCLF 322
Cdd:COG1009  296 QTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLF 341
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 204-369 5.95e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 42.18  E-value: 5.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 204 IFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMR-LFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVA 282
Cdd:PRK06521 226 LVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRvVFDLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLA 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 283 YSSVGHMGMFLAG-----IFSGFWW------GWSGGLLMMLGHGLCSSCLF-----VLSSvgydlLGTRSMYVVKGLLVF 346
Cdd:PRK06521 306 YSTIENIGIIFVGlglamVFIAYGMpllaalALTAALYHLLNHALFKSLLFlgagaVLHA-----TGTRDMEKLGGLIRR 380

                        170       180
                 ....*....|....*....|...
gi 386800542 347 FPYlTMWWFIFVAGNMAGPPSLN 369
Cdd:PRK06521 381 MPW-TAWAFLIGCLAISALPPLN 402
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 205-370 8.43e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 41.50  E-value: 8.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 205 FFFHLWLPKAhVEAPVSGSMVL-AGVLLKLGGYGAMRLFSMMNMFEMIFSDLMIMFVLWGGVITGFICFRQVDLKCLVAY 283
Cdd:PRK06525 224 LPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAY 302

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 284 SSVGHMG-MFLA---GIFsGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPYLTMWWFiFVA 359
Cdd:PRK06525 303 STITQLGyMFFGlslAIL-GSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFC-VAA 380

                        170
                 ....*....|.
gi 386800542 360 GNMAGPPSLNL 370
Cdd:PRK06525 381 LAITGVPPFNG 391
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 200-325 1.23e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 1.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 200 VKIPIFFFHLWLPKAHVEAPVSGSMVLAGVLLKLGGYGAMRLF-----SMMNMFEMIFSDLMIMFVLWGGVITGFICFRQ 274
Cdd:PRK12662 221 IKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVydvfkANFVFTTLPFNNVFMILAALAIVFGSVLAILS 300

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 386800542 275 VDLKCLVAYSSVGHMGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLS 325
Cdd:PRK12662 301 KDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVS 351
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 207-375 1.50e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.97  E-value: 1.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 207 FHLWLPKAhVEAPVSGSMVL-AGVLLKLGGYGAMRLFSmmnmfemIFSDLMIMFVLWGG------VITGFICFRQVDLKC 279
Cdd:PRK12649 233 FYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHP-------IFSGTEAWFILVSGtgmitmVLAGFLAFRQTDIKA 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 280 LVAYSSVGH----MGMFLAGIFSGFWWGWSGGLLMMLGHGLCSSCLFVLSSVGYDLLGTRSMYVVKGLLVFFPyLTMWWF 355
Cdd:PRK12649 305 ILAYSTISQlaylMTMYGYTTYHEPGLGVAAATFHLLNHATFKACLFLVAGIVAHEAATRDIRKLGGLRKEMP-ITFIVA 383

                        170       180
                 ....*....|....*....|..
gi 386800542 356 IFVAGNMAGPPSLN--LGAELF 375
Cdd:PRK12649 384 SIAALAMAGIPPLNgfLSKEMF 405
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 208-323 7.70e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 38.65  E-value: 7.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800542 208 HLWLPKAHVEAPVSGSMVLAGVLLKLGGYGaMRLFSMMNMFEMIFSDLMIMFVlwgGVITGFI----CFRQVDLKCLVAY 283
Cdd:PRK08042 200 HGWVPQAHANASAPAAALFSTVVMKIGLLG-ILTLSLLGGNAPLWWGVALLVL---GMITAFVgglyALMEHNIQRLLAY 275

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 386800542 284 SSVGHMGMFLAGIFSG-----------FWWGWSGGLLMMLGHGLCSSCLFV 323
Cdd:PRK08042 276 HTLENIGIILLGLGAGvtgialeqpalIALGLVGGLYHLLNHSLFKSVLFL 326
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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