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Conserved domains on  [gi|224588105|ref|YP_002640629|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Clonorchis sinensis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009545)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
8-300 8.24e-129

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177130  Cd Length: 293  Bit Score: 368.10  E-value: 8.24e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFV 87
Cdd:MTH00058   1 IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  88 FLSCCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVCGD 167
Cdd:MTH00058  81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 168 YGSFSFLEDFWGLSFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGSVL 247
Cdd:MTH00058 161 YSLVDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 224588105 248 FFGGALVIWIGLIHVGFFIWSRATLPRVRYDYFIEFMWKYSILMLICSVFIVL 300
Cdd:MTH00058 241 FFGGGFVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
 
Name Accession Description Interval E-value
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
8-300 8.24e-129

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 368.10  E-value: 8.24e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFV 87
Cdd:MTH00058   1 IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  88 FLSCCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVCGD 167
Cdd:MTH00058  81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 168 YGSFSFLEDFWGLSFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGSVL 247
Cdd:MTH00058 161 YSLVDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 224588105 248 FFGGALVIWIGLIHVGFFIWSRATLPRVRYDYFIEFMWKYSILMLICSVFIVL 300
Cdd:MTH00058 241 FFGGGFVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
NADHdh pfam00146
NADH dehydrogenase;
15-300 8.71e-46

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 156.48  E-value: 8.71e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   15 FLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFVFLSCCYC 94
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   95 LVFCLSHDGGCG--SVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVcgdYGSFS 172
Cdd:pfam00146  83 AVIPFGPGLVLAdlNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLL---AGSLS 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  173 FLE------DFWGLsFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGSV 246
Cdd:pfam00146 160 LSEiveaqaGGWFI-PLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVT 238
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224588105  247 LFFGGALVIWIG----------LIHVGFFIWSRATLPRVRYDYFIEFMWKYSILMLICSVFIVL 300
Cdd:pfam00146 239 LFLGGWLGPFPLpgllwfllkvFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
8-300 9.51e-46

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 157.21  E-value: 9.51e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFV 87
Cdd:COG1005    9 LITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAF 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  88 FLSCCYCLVFCLShDGGCGSVTLLWLLLITSLTGYSVLSV---GWGSYNKFALISCVRSAFGSVTFEAcFMCIVIICALV 164
Cdd:COG1005   89 IPALLAFAVIPFG-PGLVLADLNVGLLYVLAVSSLGVYGIilaGWASNNKYSLLGALRAAAQMISYEI-PLGLSLLGVVL 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 165 CgdYGSFSFLE-------DFWGLsFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIM 237
Cdd:COG1005  167 L--AGSLNLSEiveaqagGLWFI-LPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANM 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 238 FIFSWLGSVLFFGGALVIWIGLIHVG----------------FFIWSRATLPRVRYDYFIEFMWKY----SILMLICSVF 297
Cdd:COG1005  244 FLVSALATTLFLGGWLGPFPILPLGGlpgilwfllktlffifFFIWVRATLPRYRYDQLMRLGWKVllplSLVNLVLTAA 323

                 ...
gi 224588105 298 IVL 300
Cdd:COG1005  324 VVL 326
 
Name Accession Description Interval E-value
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
8-300 8.24e-129

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 368.10  E-value: 8.24e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFV 87
Cdd:MTH00058   1 IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  88 FLSCCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVCGD 167
Cdd:MTH00058  81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 168 YGSFSFLEDFWGLSFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGSVL 247
Cdd:MTH00058 161 YSLVDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 224588105 248 FFGGALVIWIGLIHVGFFIWSRATLPRVRYDYFIEFMWKYSILMLICSVFIVL 300
Cdd:MTH00058 241 FFGGGFVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
11-300 1.81e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 163.93  E-value: 1.81e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  11 LFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFVFLS 90
Cdd:MTH00218   5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  91 CCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVCGDYGS 170
Cdd:MTH00218  85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 171 FSFL---EDFWGLSFVLPVcYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGSVL 247
Cdd:MTH00218 165 EGFNltqETIWLLIPEWPL-ALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVIL 243
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224588105 248 FFGG----ALVIWIGLIHVGFFIWSRATLPRVRYDYFIEFMWK------YSILMLICSVFIVL 300
Cdd:MTH00218 244 FLGTslttINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKnflplsLALLLLHTSLPLSF 306
NADHdh pfam00146
NADH dehydrogenase;
15-300 8.71e-46

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 156.48  E-value: 8.71e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   15 FLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFVFLSCCYC 94
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   95 LVFCLSHDGGCG--SVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVcgdYGSFS 172
Cdd:pfam00146  83 AVIPFGPGLVLAdlNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLL---AGSLS 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  173 FLE------DFWGLsFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGSV 246
Cdd:pfam00146 160 LSEiveaqaGGWFI-PLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVT 238
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224588105  247 LFFGGALVIWIG----------LIHVGFFIWSRATLPRVRYDYFIEFMWKYSILMLICSVFIVL 300
Cdd:pfam00146 239 LFLGGWLGPFPLpgllwfllkvFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
8-300 9.51e-46

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 157.21  E-value: 9.51e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFV 87
Cdd:COG1005    9 LITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAF 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  88 FLSCCYCLVFCLShDGGCGSVTLLWLLLITSLTGYSVLSV---GWGSYNKFALISCVRSAFGSVTFEAcFMCIVIICALV 164
Cdd:COG1005   89 IPALLAFAVIPFG-PGLVLADLNVGLLYVLAVSSLGVYGIilaGWASNNKYSLLGALRAAAQMISYEI-PLGLSLLGVVL 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 165 CgdYGSFSFLE-------DFWGLsFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIM 237
Cdd:COG1005  167 L--AGSLNLSEiveaqagGLWFI-LPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANM 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 238 FIFSWLGSVLFFGGALVIWIGLIHVG----------------FFIWSRATLPRVRYDYFIEFMWKY----SILMLICSVF 297
Cdd:COG1005  244 FLVSALATTLFLGGWLGPFPILPLGGlpgilwfllktlffifFFIWVRATLPRYRYDQLMRLGWKVllplSLVNLVLTAA 323

                 ...
gi 224588105 298 IVL 300
Cdd:COG1005  324 VVL 326
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
8-299 7.03e-45

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 154.26  E-value: 7.03e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFV 87
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  88 FLSCCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVCGD 167
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 168 YGSFSFLEDFWG--LSFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGS 245
Cdd:MTH00143 161 FSFIEISESQFSvwLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224588105 246 VLFFGGALVIWIG---------LIHVGFFIWSRATLPRVRYDYFIEFMWKY----SILMLICSVFIV 299
Cdd:MTH00143 241 VLFFGGSSVLFLLggvvfmfkvLFFAFLFIWVRASYPRFRYDLLMMLCWKSflpfSLSILVLFVVLV 307
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
10-300 7.92e-45

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 154.13  E-value: 7.92e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  10 ILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFVFL 89
Cdd:MTH00195   4 SVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALAL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  90 SCCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACfMCIVIICALVCGDYG 169
Cdd:MTH00195  84 ALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVS-MGLIILCPICLAGSF 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 170 SFSFLED----FWGLsFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGS 245
Cdd:MTH00195 163 DFTIMVIsqgfSWVI-LLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTT 241
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 224588105 246 VLFFGGALVIWIGLIHVGF---FIWSRATLPRVRYDYFIEFMWKySILMLICSVFIVL 300
Cdd:MTH00195 242 ILFLGGGGTIIVALKSLFLsfcFLWVRGSLPRFRYDQLMHLTWK-CYLPLILSLLIPL 298
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
8-300 9.99e-44

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 151.34  E-value: 9.99e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFV 87
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  88 FLSCCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCI---VIICALV 164
Cdd:MTH00225  81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALIllsIVFLVLT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 165 CGDYGSFSFLEDFWgLSFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLG 244
Cdd:MTH00225 161 YNLFDFSYNQKYFW-FMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLT 239
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224588105 245 SVLFFGGALV------IWIGLIHVGFFIWSRATLPRVRYDYFIEFMWKYSILMLICSVFIVL 300
Cdd:MTH00225 240 SILFFGGFFVtidlflILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVL 301
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
8-298 1.19e-43

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 151.08  E-value: 1.19e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFV 87
Cdd:MTH00193   2 MMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  88 FLSCCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVCGD 167
Cdd:MTH00193  82 FLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGS 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 168 YGSFSFL---EDFWGLSFVLPVcYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLG 244
Cdd:MTH00193 162 FNLLDFMnyqKYIWFIFFSFPL-FLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224588105 245 SVLFFGGALVIWI----GLIHVGFFIWSRATLPRVRYDYFIEFMWK----YSILMLICSVFI 298
Cdd:MTH00193 241 VLMFLGGDLLSLLfylkLLFISFLFIWVRGTLPRFRYDKLMYLAWKsflpLSLNYLLFFFGL 302
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
10-298 3.64e-43

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 150.34  E-value: 3.64e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  10 ILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFVFL 89
Cdd:PRK06076  12 ILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIP 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  90 SCCYCLVFCLSHDGGCG--SVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEAcFMCIVIICALVCgd 167
Cdd:PRK06076  92 AFLAWAVIPFGPELVIAdlNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEV-PLGLSLLAVVLL-- 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 168 YGSFSFLE-----DFWGLSFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSW 242
Cdd:PRK06076 169 AGSLNLSDiveaqFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSA 248
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224588105 243 LGSVLFFGGALVIWIGLIHVG--------------FFIWSRATLPRVRYDYFIEFMWKY----SILMLICSVFI 298
Cdd:PRK06076 249 LITTLFLGGWLPPFPLGGGIPgaiwfvlkvaffvfLFIWLRATLPRYRYDQLMRLGWKVllplSLVNLLLTAAV 322
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
6-300 4.37e-41

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 144.73  E-value: 4.37e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   6 LSVYILFSSFLAFVI-IMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVF 84
Cdd:MTH00040   1 MSVILFLINLLSFIVpVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  85 LFVFLSCCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALV 164
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 165 CGDYGSFSFLEDFWGLSFVLPV--CYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSW 242
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPClpLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224588105 243 LGSVLFFGGAL---------VIWIGL---IHVGFFIWSRATLPRVRYDYFIEFMWK----YSILMLICSVFIVL 300
Cdd:MTH00040 241 LSVILFLGGGSpfneifpinIIIVGIkttFLVFLFLWVRASYPRFRYDQLMFLTWKnylpLSIGLLIFYLLLLS 314
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
6-300 4.21e-36

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 131.44  E-value: 4.21e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   6 LSVYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFkvslfQVRSWFGWLGVFL 85
Cdd:MTH00010   1 MNISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKE-----QTKPSPANITPFL 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  86 F-----VFLSCCYCLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVI- 159
Cdd:MTH00010  76 GapmmsLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLs 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 160 -ICALVCGDYGSFSFLEDFWGLSFVLPVcYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMF 238
Cdd:MTH00010 156 aLLILQTFSFSKIIMSQYSWILLMIIPL-TVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANIL 234
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 239 IFSWLGSVLF--------FGGALVIWIGLIHVGFFIWSRATLPRVRYDYFIEFMWKYSILMLICSVFIVL 300
Cdd:MTH00010 235 IMSLFTSVFFtsfipsifISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISI 304
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
4-286 3.35e-34

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 126.66  E-value: 3.35e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   4 LLLSVYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKV-------SLFQVR- 75
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIrpstssqILFILMp 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  76 ------SWFGWLGVFL-FVFLSCCYCLVFCLShdggcgsvtllwlllITSLTGYSVLSVGWGSYNKFALISCVRSAFGSV 148
Cdd:MTH00071  81 tmaltlALIIWTPLPMpNNLSNLNLGILFILA---------------LSSLAVYSILGSGWASNSKYALIGALRAVAQTI 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 149 TFEACFMCIVIICALVCGDYGSFSFL---EDFWglsFVLPV--CYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCN 223
Cdd:MTH00071 146 SYEVTLGLILLCLILLTGGFSLMNFNttqEFMW---LIIPAwpMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAG 222
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224588105 224 VPFTCLFACEYLIMFIFSWLGSVLFFGGALVIW------IGLIHVG-----FFIWSRATLPRVRYDYFIEFMWK 286
Cdd:MTH00071 223 GPFALFFLAEYANILMMNTLSTILFLGSTYNHLqpelstMNLMIKAsilsmLFLWVRASYPRFRYDQLMHLVWK 296
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
16-286 5.30e-33

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 123.56  E-value: 5.30e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  16 LAFVI-IMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVS-------LFQVRSWFGW-LGVFLF 86
Cdd:MTH00134  13 LAYIVpVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRpstsspfLFLATPMLALtLALTLW 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  87 VFLSCCYCLVfclshDGGCGSVTLLWLLLITSltgYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVCG 166
Cdd:MTH00134  93 APMPMPYPVT-----DLNLGILFILALSSLAV---YSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTG 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 167 DYGSFSF---LEDFWGLSFVLPVCYfLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWL 243
Cdd:MTH00134 165 GFTLQTFntaQESIWLLLPAWPLAA-MWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 224588105 244 GSVLFFGGA------------LVIWIGLIHVgFFIWSRATLPRVRYDYFIEFMWK 286
Cdd:MTH00134 244 SAILFLGAShiptlpelttinLMTKAALLSV-VFLWVRASYPRFRYDQLMHLVWK 297
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
21-286 1.01e-32

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 122.81  E-value: 1.01e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  21 IMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVK-------FKVSLFQVRSWFGW-LGVFLFVFLSCC 92
Cdd:MTH00104  13 ILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKeplrpltSSTTMFIIAPILALtLALTMWIPLPMP 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  93 YCLV-------FCLSHDGgcgsvtllwlllitsLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACfMCIVIICALVC 165
Cdd:MTH00104  93 YPLInmnlgvlFILAMSS---------------LAVYSILWSGWASNSKYALIGALRAVAQTISYEVT-LAIILLSVLLM 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 166 GdyGSFSFL------EDFWGLSFVLPVCyFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFI 239
Cdd:MTH00104 157 N--GSFTLStlittqEHLWLIFPSWPLA-MMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIM 233
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 224588105 240 FSWLGSVLFFGGALVIWI-----------GLIHVGFFIWSRATLPRVRYDYFIEFMWK 286
Cdd:MTH00104 234 MNALTTILFLGAFHNPYMpelyttnftikTLLLTILFLWIRASYPRFRYDQLMHLLWK 291
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
8-286 9.84e-32

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 120.22  E-value: 9.84e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFV 87
Cdd:MTH00216   6 IFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSF 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  88 FLSCCYCLVFCLSHDGGCG--SVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVC 165
Cdd:MTH00216  86 TLALIVWGVIPYERGVLISdfKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCV 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 166 GDYGSFSF-LEDFWGLSFVLPV--CYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSW 242
Cdd:MTH00216 166 GSLSITEIvLAQNNGIWFFFPLfpVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSC 245
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 224588105 243 LGSVLFFGGAL---------VIWIGL---IHVGFFIWSRATLPRVRYDYFIEFMWK 286
Cdd:MTH00216 246 LTTILFLGGWLspikyfkggAGWFGLkvvFIIFLFIWVRASFPRIRYDQLMALLWK 301
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
11-286 1.81e-31

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 119.23  E-value: 1.81e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  11 LFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVK------------FKVS--LFQVRS 76
Cdd:MTH00111   8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKepirpstsspilFTLTpiLALLLA 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  77 WFGWLGVFL-FVFLSCCYCLVFCLSHDGgcgsvtllwlllitsLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFM 155
Cdd:MTH00111  88 LTIWTPLPMpFPLADLNLGLLFLLAMSS---------------MAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLG 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 156 CIVIICALVCGDYGSFSFL---EDFWGLSFVLPVCyFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFAC 232
Cdd:MTH00111 153 IILLSLILLSGGYTLQTLAttqEPLWLIFSSWPLA-MMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLA 231
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224588105 233 EYLIMFIFSWLGSVLF------------FGGALVIWIGLIHVGfFIWSRATLPRVRYDYFIEFMWK 286
Cdd:MTH00111 232 EYANILLMNTLTTILFlnpstlnlppelFTINLMTKTLLLTSG-FLWIRASYPRFRYDQLMHLLWK 296
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
8-286 8.59e-29

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 112.13  E-value: 8.59e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKfKVSLFQVRSWFGW------- 80
Cdd:MTH00054   2 GIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTK-EIIIPNHANIFIYimapils 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  81 LGVFLFVFLSCCYCLVFCLShDGGCGSVTLLWLLLITSltgYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVII 160
Cdd:MTH00054  81 LTLAFIAWGVIPYGEGVVLS-DLGIGILYLFAVSSISV---YAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 161 CALVCGDYGSFSFLEDFWGLSFVLPV--CYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMF 238
Cdd:MTH00054 157 VVLCVGSLNLTEIVLAQKNIWFIFPLfpAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHII 236
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224588105 239 IFSWLGSVLFFGGALVIWIGL----------IHVGF----FIWSRATLPRVRYDYFIEFMWK 286
Cdd:MTH00054 237 LMSTFGVILFLGGWLVISGPTsyfsnfvwfgIKIALiiflFIWIRASYPRIRYDQLMALLWK 298
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
15-285 2.48e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 104.60  E-value: 2.48e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  15 FLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLGVFLFVFLSCCYC 94
Cdd:MTH00090   3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  95 LVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALvcgDYGSFSFL 174
Cdd:MTH00090  83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIML---HNNSFSFV 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 175 EDFwglSFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGSVLFFGGALV 254
Cdd:MTH00090 160 SSF---SLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFL 236
                        250       260       270
                 ....*....|....*....|....*....|.
gi 224588105 255 IWigLIHVGFFIWSRATLPRVRYDYFIEFMW 285
Cdd:MTH00090 237 ML--FLIFSLLIFIRSSYPRFRYDMMMSMFW 265
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
15-286 5.48e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 105.10  E-value: 5.48e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  15 FLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIVKFKVSLFQVRSWFGWLG-VFLFVFLSCCY 93
Cdd:MTH00029  14 LIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIApIISFTLAILAW 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  94 CLVfclSHDGGCG----SVTLLWLLLITSLTGYSVLSVGWGSYNKFALISCVRSAFGSVTFEACFMCIVIICALVCGDYG 169
Cdd:MTH00029  94 AIV---TMDQGVFlsdlDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 170 SFSFLEDFWGLSFVLPV--CYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGSVL 247
Cdd:MTH00029 171 ISEIVISQRSVWLIIPLfpAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224588105 248 FFGGAL------------------------VIWI---GLIHVGFFIWSRATLPRVRYDYFIEFMWK 286
Cdd:MTH00029 251 FLGGWLspldgiptppeafsifeqiassksSFWFftkSSIFILFFIWSRASFPRIRYDQLMKLLWK 316
ndhA CHL00032
NADH dehydrogenase subunit 1
8-287 3.76e-13

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 68.82  E-value: 3.76e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105   8 VYILFSSFLAFVIIMLFVAFFILGERKILGYMQIRKGPNKVGFLGLFQSFADLLKLIvkFKVSLFQVR--SWFGWLG--- 82
Cdd:CHL00032  27 IWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLL--FKEDLLPSRgdIRLFSIGpsi 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  83 VFLFVFLSCcycLVFCLSH-----DGGCGsVTLLWLLLITSLTGysVLSVGWGSYNKFALISCVRSAFGSVTFEACF-MC 156
Cdd:CHL00032 105 AVISILLSY---LVIPFGYhlvlaDLSIG-VFLWIAISSIAPIG--LLMSGYGSNNKYSFLGGLRAAAQSISYEIPLtLC 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 157 IVIICALVcgdyGSFSFLE--------DFWGLS-FVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFT 227
Cdd:CHL00032 179 VLSISLLS----NSLSTVDiveaqskyGFWGWNlWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFG 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 228 CLFACEYLIMFIFSWLGSVLFFGG-------------------------ALVIWIGLIHVGFF----IWSRATLPRVRYD 278
Cdd:CHL00032 255 LFYVASYLNLLVSSLFVTVLYLGGwnlsipyifipelfeinktggvfgtTIGIFITLAKTYLFlfisITTRWTLPRLRMD 334

                 ....*....
gi 224588105 279 YFIEFMWKY 287
Cdd:CHL00032 335 QLLNLGWKF 343
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
16-300 2.30e-11

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 63.28  E-value: 2.30e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  16 LAFVIIMLFVAFFILG-ERKILGYMQIRKGPnkvgflGLFQSFADLLKLIVKfKVSLFQVRSWFGWLG---VFLFVFLSC 91
Cdd:COG0650    8 LLQLLLALLLAPLLLGiIRKVKARLQGRRGP------PILQPYYDLLKLLRK-ETVVPETASWLFRAApyvALAAMLLAA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105  92 CY-CLVFCLSHDGGCGSVTLLWLLLITSLTGYSVLSVGWGSYnkFALISCVRSAFGSVTFEACFMCIVIICALVCG---- 166
Cdd:COG0650   81 LLvPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSP--FGGIGASREMTLSALAEPPLLLVLFALALLAGstsl 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224588105 167 -DYGSFSFLEDFWGLSFVLPVCYFLWLAGMLCECNRTPLDYAEAESELVSGLSTEYCNVPFTCLFACEYLIMFIFSWLGS 245
Cdd:COG0650  159 sDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFV 238
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224588105 246 VLFFG---------GALVIWIGLIHVGFFI-WSRATLPRVRYDYFIEFMWKYSILMLICSVFIVL 300
Cdd:COG0650  239 NLFLPwgialtlllALLLFLLKLLVLAVLLaVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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