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Conserved domains on  [gi|192293777|ref|YP_001994339|]
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cytochrome b (mitochondrion) [Normichthys operosus]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 717.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   1 MASLRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  81 SMHANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNEL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 161 VQWIWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 241 ALSLFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 192293777 321 SQLVFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPVAGWAENKAINW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 717.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   1 MASLRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  81 SMHANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNEL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 161 VQWIWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 241 ALSLFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 192293777 321 SQLVFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPVAGWAENKAINW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-373 2.87e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 346.01  E-value: 2.87e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  22 PTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLYIHIARG 101
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 102 LYYGSH-----LyleTWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNATLT 176
Cdd:COG1290  111 FFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 177 RFFAF-HFLFPFVIVAVTLLHLLFLHETGSTNPAG----LSSDTDKIPFHPYFTYKDLLGFVILLVSLMALSLFWPNllG 251
Cdd:COG1290  188 RFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 252 DPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFP--NKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQLVFWTLV 329
Cdd:COG1290  266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 192293777 330 ADMLILTWIGGLPVehPYILIGQIASVLYFSLFLIFTPVAGWAE 373
Cdd:COG1290  346 VFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 16-206 2.67e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 247.28  E-value: 2.67e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  16 VAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLY 95
Cdd:cd00284    8 NSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLY 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  96 IHIARGLYYGSH--LYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNA 173
Cdd:cd00284   88 LHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNA 167

                        170       180       190
                 ....*....|....*....|....*....|...
gi 192293777 174 TLTRFFAFHFLFPFVIVAVTLLHLLFLHETGST 206
Cdd:cd00284  168 TLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 4.55e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 233.43  E-value: 4.55e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   18 VVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLYIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   98 IARGLYYGSHLYL--ETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 192293777  176 TRFFAFHFLFPFVIVAVTLLHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 233-325 1.66e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.57  E-value: 1.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  233 VIL--LVSLMALSLFWPNLLGDPdnftpANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMS 310
Cdd:TIGR01156  43 VILgtIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENV 117

                          90
                  ....*....|....*.
gi 192293777  311 VQRGLTF-RPISQLVF 325
Cdd:TIGR01156 118 NKFQNPFrRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 717.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   1 MASLRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  81 SMHANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNEL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 161 VQWIWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 241 ALSLFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 192293777 321 SQLVFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPVAGWAENKAINW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00119
cytochrome b; Provisional
 4-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 641.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   4 LRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMH 83
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  84 ANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQW 163
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 164 IWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMALS 243
Cdd:MTH00119 165 IWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLA 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 244 LFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQL 323
Cdd:MTH00119 245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 192293777 324 VFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPVAGWAENKAINW 379
Cdd:MTH00119 325 LFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00074
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 630.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   1 MASLRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  81 SMHANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNEL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 161 VQWIWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 241 ALSLFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPI 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 192293777 321 SQLVFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPVAGWAENKAINW 379
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 628.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   1 MASLRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  81 SMHANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNEL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 161 VQWIWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 241 ALSLFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 192293777 321 SQLVFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPVAGWAENKAINW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00191
cytochrome b; Provisional
 4-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 600.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   4 LRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  84 ANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 164 IWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMALS 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 244 LFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQL 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 192293777 324 VFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPV 368
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 17-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 572.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  17 AVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLYI 96
Cdd:MTH00156   7 SLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  97 HIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNATLT 176
Cdd:MTH00156  87 HIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLT 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 177 RFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMALSLFWPNLLGDPDNF 256
Cdd:MTH00156 167 RFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENF 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 257 TPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQLVFWTLVADMLILT 336
Cdd:MTH00156 247 IPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLT 326

                        330       340
                 ....*....|....*....|....*....
gi 192293777 337 WIGGLPVEHPYILIGQIASVLYFSLFLIF 365
Cdd:MTH00156 327 WIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00034
cytochrome b; Validated
 4-378 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 565.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   4 LRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  84 ANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 164 IWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMALS 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 244 LFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQL 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 192293777 324 VFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPVAGWAENKAIN 378
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00145
cytochrome b; Provisional
 1-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 561.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   1 MASLRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  81 SMHANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNEL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 161 VQWIWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLM 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 241 ALSLFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPI 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 192293777 321 SQLVFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLI 364
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI 365
CYTB MTH00016
cytochrome b; Validated
 1-366 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 534.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   1 MASLRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIR 80
Cdd:MTH00016   2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  81 SMHANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNEL 160
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 161 VQWIWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLM 240
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 241 ALSLFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPI 320
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 192293777 321 SQLVFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFT 366
Cdd:MTH00016 322 NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINP 367
CYTB MTH00022
cytochrome b; Validated
 4-375 5.34e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 491.91  E-value: 5.34e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   4 LRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  84 ANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQW 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 164 IWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMALS 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 244 LFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQL 323
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 192293777 324 VFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPVAGWAENK 375
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQ 374
CYTB MTH00053
cytochrome b; Provisional
 3-378 8.63e-171

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 481.51  E-value: 8.63e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   3 SLRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSM 82
Cdd:MTH00053   4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  83 HANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQ 162
Cdd:MTH00053  84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVR 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 163 WIWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMAL 242
Cdd:MTH00053 164 WVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSII 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 243 SLFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQ 322
Cdd:MTH00053 244 VFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSK 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 192293777 323 LVFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLIFTPVAGWAENKAIN 378
Cdd:MTH00053 324 ILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 4-364 2.97e-164

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 464.78  E-value: 2.97e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   4 LRKSHPLLEPASVAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  84 ANGASFFFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQW 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 164 IWGGFAVDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMALS 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 244 LFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQL 323
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 192293777 324 VFWTLVADMLILTWIGGLPVEHPYILIGQIASVLYFSLFLI 364
Cdd:MTH00224 325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 10-374 2.68e-129

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 376.20  E-value: 2.68e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  10 LLEPASvAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASF 89
Cdd:MTH00033   8 LLEPVN-DIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  90 FFICLYIHIARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFA 169
Cdd:MTH00033  87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 170 VDNATLTRFFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMALSL--FWP 247
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIE 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 248 NLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQLVFWT 327
Cdd:MTH00033 247 TLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWF 326

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 192293777 328 LVADMLILTWIGGLPV-EHPYILIGQIASVLYFSLFLIFTPVAGWAEN 374
Cdd:MTH00033 327 IVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-373 2.87e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 346.01  E-value: 2.87e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  22 PTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLYIHIARG 101
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 102 LYYGSH-----LyleTWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNATLT 176
Cdd:COG1290  111 FFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 177 RFFAF-HFLFPFVIVAVTLLHLLFLHETGSTNPAG----LSSDTDKIPFHPYFTYKDLLGFVILLVSLMALSLFWPNllG 251
Cdd:COG1290  188 RFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 252 DPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFP--NKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQLVFWTLV 329
Cdd:COG1290  266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 192293777 330 ADMLILTWIGGLPVehPYILIGQIASVLYFSLFLIFTPVAGWAE 373
Cdd:COG1290  346 VFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 18-365 2.10e-110

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 326.90  E-value: 2.10e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  18 VVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLYIH 97
Cdd:MTH00086   7 VVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLH 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  98 IARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNATLTR 177
Cdd:MTH00086  87 IFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 178 FFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVsLMALSLFWPNLLGDPDNFT 257
Cdd:MTH00086 167 FFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFI 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 258 PANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQrglTFRPISQLVFWTLVADMLILTW 337
Cdd:MTH00086 246 EADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSW 322

                        330       340
                 ....*....|....*....|....*...
gi 192293777 338 IGGLPVEHPYILIGQIASVLYFSLFLIF 365
Cdd:MTH00086 323 LGQCLVEYPFLFLSQIFSFIYFFLILLM 350
CYTB MTH00046
cytochrome b; Validated
 18-365 3.09e-82

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 254.91  E-value: 3.09e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  18 VVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLYIH 97
Cdd:MTH00046   9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  98 IARGLYYGSHLYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNATLTR 177
Cdd:MTH00046  89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 178 FFAFHFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSD-TDKIPFHPYFTYKDLLGFVILLVSLMALSLFWPNLLGDPDNF 256
Cdd:MTH00046 169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 257 TPANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFvVPILHMSVqrglTFRPISQLVFWTLVADMLILT 336
Cdd:MTH00046 249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLW-VPTFNGSS----VYSVWRQVNFWLIVSLFFSLS 323

                        330       340
                 ....*....|....*....|....*....
gi 192293777 337 WIGGLPVEHPYILIGQIASVLYFSLFLIF 365
Cdd:MTH00046 324 YLGGCHPEYPYLLISQLFSVLMVLLLFIF 352
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 16-206 2.67e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 247.28  E-value: 2.67e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  16 VAVVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLY 95
Cdd:cd00284    8 NSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLY 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  96 IHIARGLYYGSH--LYLETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNA 173
Cdd:cd00284   88 LHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNA 167

                        170       180       190
                 ....*....|....*....|....*....|...
gi 192293777 174 TLTRFFAFHFLFPFVIVAVTLLHLLFLHETGST 206
Cdd:cd00284  168 TLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 4.55e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 233.43  E-value: 4.55e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   18 VVDLPTPSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLYIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   98 IARGLYYGSHLYL--ETWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 192293777  176 TRFFAFHFLFPFVIVAVTLLHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 2.81e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 160.50  E-value: 2.81e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 207 NPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMALSLFWPNLLGDPDNFTPANPLMTPLHIKPEWYFLFAYAILRSFPN 286
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 192293777 287 KLGGVLALLASVLVLFVVPILHMSVQRGlTFRPISQLVFWTLVADMLILTWIGGLPVEHPYILIGQIA 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 7.86e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 147.00  E-value: 7.86e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777   88 SFFFICLYIHIARGLYYGSHLYLE--TWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  166 GGFAVDNATLTRFFAF-HFLFPFVIVAVTLLHLLFLHETGSTNPAGLSSDTDKIPFHPYFTYKDLLGFVILLVSLMALSL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 192293777  245 FWPNLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 4.17e-38

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 132.22  E-value: 4.17e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  258 PANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMSVQRGLTFRPISQLVFWTLVADMLILTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 192293777  338 IGGLPVEHPYILIGQIASVLY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 33-208 2.94e-29

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 112.88  E-value: 2.94e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  33 FGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLYIHIARGLYYGSHLYLE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 112 -TWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNATLTRFFAFHFLFP-FVI 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHVFFLpWAL 203

                        170
                 ....*....|....*....
gi 192293777 190 VAVTLLHLLFLHETGSTNP 208
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 24-208 1.26e-24

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 100.18  E-value: 1.26e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  24 PSNISAWWNFGSLLGLCLIAQILTGLFLAMHYTSDISTAYSSVTHICRDVTYGWLIRSMHANGASFFFICLYIHIARgly 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--- 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 104 ygshLYLE---------TWNIGVILLLLAMVTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNELVQWIWGGFAVDNAT 174
Cdd:CHL00070 104 ----VYLTggfkkprelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQST 179

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 192293777 175 LTRFFAFHFLFPFVIVAVTLL-HLLFLHETGSTNP 208
Cdd:CHL00070 180 LTRFYSLHTFVLPLLTAVFMLmHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 229-325 5.18e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 54.80  E-value: 5.18e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 229 LLGFVILLVSLMALSlfwPNLLGDPdnftpANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILH 308
Cdd:COG5679   45 ILGTIALCIGLAVLD---PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                         90
                 ....*....|....*...
gi 192293777 309 MSVQRGLTF-RPISQLVF 325
Cdd:COG5679  117 NVNKFQNPFrRPVATAVF 134
petD CHL00058
cytochrome b6/f complex subunit IV
 233-330 6.50e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.54  E-value: 6.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777 233 VIL--LVSLMALSLFWPNLLGDPdnftpANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMS 310
Cdd:CHL00058  43 VILgtIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENV 117

                         90       100
                 ....*....|....*....|...
gi 192293777 311 VQRGLTF-RPISQLVFW--TLVA 330
Cdd:CHL00058 118 NKFQNPFrRPVATTVFLigTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 233-325 1.66e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.57  E-value: 1.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 192293777  233 VIL--LVSLMALSLFWPNLLGDPdnftpANPLMTPLHIKPEWYFLFAYAILRSFPNKLGGVLALLASVLVLFVVPILHMS 310
Cdd:TIGR01156  43 VILgtIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENV 117

                          90
                  ....*....|....*.
gi 192293777  311 VQRGLTF-RPISQLVF 325
Cdd:TIGR01156 118 NKFQNPFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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