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Conserved domains on  [gi|171473620|ref|YP_001798512|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Sminthurus viridis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-113 3.87e-37

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 121.42  E-value: 3.87e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-113 3.87e-37

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 121.42  E-value: 3.87e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
17-112 2.43e-23

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 85.94  E-value: 2.43e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   17 IMLNSLISSKKgTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKVLdMWLWVLLTFLFII 96
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFREL-GWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 171473620   97 ILVGGTIHEWKEGSLD 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-113 4.44e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.63  E-value: 4.44e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   2 ILLIMVLTLVISTALIMLNSLISSKKgTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKV 81
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRE 86

                         90       100       110
                 ....*....|....*....|....*....|..
gi 171473620  82 LdMWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:COG0838   87 L-GWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-113 3.87e-37

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 121.42  E-value: 3.87e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-115 4.97e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 111.24  E-value: 4.97e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00202   3 LILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLK 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDWTK 115
Cdd:MTH00202  83 SSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 1.49e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 107.64  E-value: 1.49e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00148   3 SILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLG 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDWTK 115
Cdd:MTH00148  83 SSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-114 1.68e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 99.93  E-value: 1.68e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00012   3 LMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILM 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDWT 114
Cdd:MTH00012  83 TSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 6-115 1.37e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 87.30  E-value: 1.37e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   6 MVLTLVISTALIMLNSLIS---SKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKVL 82
Cdd:MTH00106   3 LMLTLLTNTLLASLLVLIAfwlPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTN 82

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  83 DMWLWVLLTFLFIIILVGGTIHEWKEGSLDWTK 115
Cdd:MTH00106  83 NLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 2.41e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 86.47  E-value: 2.41e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSrEKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00113   2 NLISMLTISLALSTILTTLNFWLTQTKPDN-EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDWT 114
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
17-112 2.43e-23

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 85.94  E-value: 2.43e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   17 IMLNSLISSKKgTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKVLdMWLWVLLTFLFII 96
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFREL-GWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 171473620   97 ILVGGTIHEWKEGSLD 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-113 2.99e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 86.59  E-value: 2.99e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSrEKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDS-EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQ 79

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:MTH00069  80 LNTPTNTLFWSTLILILLTLGLIYEWIQGGLEW 112
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 2-113 1.16e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 84.95  E-value: 1.16e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   2 ILLIMVLTLVISTALIMLNSLISSKKgTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILkv 81
Cdd:MTH00203   4 IMLFFLIALLLSLILLFIAFWLPKVN-PDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN-- 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 171473620  82 LDMWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:MTH00203  81 QLSSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-113 4.44e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.63  E-value: 4.44e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   2 ILLIMVLTLVISTALIMLNSLISSKKgTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKV 81
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRE 86

                         90       100       110
                 ....*....|....*....|....*....|..
gi 171473620  82 LdMWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:COG0838   87 L-GWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-113 1.95e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 81.95  E-value: 1.95e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-113 5.17e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 80.73  E-value: 5.17e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLnSLISSKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILK 80
Cdd:MTH00136   3 LITTILTITIALSLILAIV-SFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQ 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:MTH00136  82 LPSPLLTFFWATAVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 3-113 8.31e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 75.10  E-value: 8.31e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   3 LLIMVLTLVISTALIMLNSLISSKKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKVL 82
Cdd:MTH00018   3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                         90       100       110
                 ....*....|....*....|....*....|..
gi 171473620  83 DMW-LWVLLTFLFIIILvgGTIHEWKEGSLDW 113
Cdd:MTH00018  83 APFgFWTMVGFLFILTL--GLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 2-113 1.81e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 74.36  E-value: 1.81e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   2 ILLIMVLTLVISTALIMLNSLISSKKGTSrEKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKV 81
Cdd:MTH00055   8 IFILLLFSIGLSTVISGASYIVGVKQPDS-EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQ 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  82 LDMW-LWVLltFLFIIILVGGTIHEWKEGSLDW 113
Cdd:MTH00055  87 IGLFgFWVM--YLFLIILTIGLIYEWVKGGLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 2-114 3.82e-17

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 71.05  E-value: 3.82e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   2 ILLIMVLTLVISTALIMLNSLISSKKGtSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKV 81
Cdd:PRK06602  11 FLIFLIVAIGLGILLLVAGKLLGPRAP-DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFRE 89

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  82 LdMWLWVLLTFLFIIILVGGTIHEWKEGSLDWT 114
Cdd:PRK06602  90 I-GWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
2-113 1.05e-16

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 70.08  E-value: 1.05e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   2 ILLIMVLTLVISTALIMLNSLISSK---KGTSREKLSAFECGYDP-KSPSRLpfSMQFFLIAVIFLIFDVEITLIIPMPM 77
Cdd:PRK08489  13 VFVLLVLTFVAFFLTTRLARFISRKlaqKNTEKLKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAV 90

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 171473620  78 ILKVLDmWLWVLLTFLFIIILVGGTIHEWKEGSLDW 113
Cdd:PRK08489  91 DFKLLG-LFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 2-113 2.13e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 66.49  E-value: 2.13e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   2 ILLIMVLTLVISTALIMLNSLISSKKGTSrEKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKV 81
Cdd:MTH00030  13 LLGVGIILLLVSISFTLGNSRIGLTKPDS-EKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQ 91

                         90       100       110
                 ....*....|....*....|....*....|...
gi 171473620  82 LDMW-LWVLLTFLfiIILVGGTIHEWKEGSLDW 113
Cdd:MTH00030  92 LNLFsFWIVYTFL--IVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 10-114 1.12e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 54.22  E-value: 1.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620  10 LVISTALIMLNSLISS---KKGTSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKVLDMWL 86
Cdd:CHL00022  14 LIISSLIPILAFLISGllaPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSA 93

                         90       100
                 ....*....|....*....|....*...
gi 171473620  87 WVlLTFLFIIILVGGTIHEWKEGSLDWT 114
Cdd:CHL00022  94 FI-EALIFVLILIVGLVYAWRKGALEWS 120
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 2-114 2.76e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 50.83  E-value: 2.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   2 ILLIMVLTLVISTALIMLNSLISSKKgTSREKLSAFECGYDPK----SPSRLPfsMQFFLIAVIFLIFDVEITLIIPMPM 77
Cdd:PRK07928   7 ILVLGALAAAFAVVSVVVASLVGPKR-YNRAKLEAYECGIEPTpqpaGGGRFP--VKYYLTAMLFIVFDIEIVFLYPWAV 83

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 171473620  78 ILKVLDmWLWVLLTFLFIIILVGGTIHEWKEGSLDWT 114
Cdd:PRK07928  84 SFDALG-VFGLVEMALFMLTVFVAYAYVWRRGGLEWD 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
30-113 4.43e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 47.82  E-value: 4.43e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620  30 SREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPMILKVLDMWLWVLLtFLFIIILVGGTIHEWKEG 109
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEM-LIFVVMLLVGLAYAWKKK 117


                 ....
gi 171473620 110 SLDW 113
Cdd:PRK07756 118 VLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 2.60e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.57  E-value: 2.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGtSREKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEItliipMPMILK 80
Cdd:MTH00092   3 VLIFVFLFTLLLLMLLYLLNFFLSVKKF-DLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEI-----VMFLGL 76

                         90       100       110
                 ....*....|....*....|....*....|....
gi 171473620  81 VLDMWLWVLLTFLFIIILVGGTIHEWKEGSLDWT 114
Cdd:MTH00092  77 LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIWV 110
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-114 5.77e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.41  E-value: 5.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620  35 SAFECGYDPKSPSRLPFSMQFFLIAVIFLIFDVEITLIIPMPM-ILKVLDMWLWvlltFLFIIILVGGTIHEWKEGSLDW 113
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFqGLLFYNFWYY----YFFLLLLFLGFVVELFSGYVRW 114


                 .
gi 171473620 114 T 114
Cdd:MTH00060 115 V 115
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 1-96 8.65e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 33.43  E-value: 8.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171473620   1 MILLIMVLTLVISTALIMLNSLISSKKGTSReKLSAFECGYDPKSPSRLPFSMQFFLIAVIFLIFD--VEITLIIPMPMI 78
Cdd:PRK06073   9 AFGLVIVLGLAAGVGTYKLLKLILPSKPTPL-KVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEpiVVLLLLIAFAPY 87

                         90
                 ....*....|....*...
gi 171473620  79 LKVLDMWLWVLLTFLFII 96
Cdd:PRK06073  88 YTFRDLLLLIVVALVLMY 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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