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Conserved domains on  [gi|164519180|ref|YP_001648864|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Microhyla okinavensis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009553)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214418  Cd Length: 322  Bit Score: 543.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180   1 MTKLFLYFLPLLYIAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPT 80
Cdd:MTH00071   2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  81 LALALAMLLWTPFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFL 160
Cdd:MTH00071  82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 161 VGSFTLSSFSITQLHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 240
Cdd:MTH00071 162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 241 LTIILFINSSIFFPMP---SVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITPP 317
Cdd:MTH00071 242 LSTILFLGSTYNHLQPelsTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321


                 .
gi 164519180 318 T 318
Cdd:MTH00071 322 M 322
 
Name Accession Description Interval E-value
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 543.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180   1 MTKLFLYFLPLLYIAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPT 80
Cdd:MTH00071   2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  81 LALALAMLLWTPFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFL 160
Cdd:MTH00071  82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 161 VGSFTLSSFSITQLHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 240
Cdd:MTH00071 162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 241 LTIILFINSSIFFPMP---SVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITPP 317
Cdd:MTH00071 242 LSTILFLGSTYNHLQPelsTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321


                 .
gi 164519180 318 T 318
Cdd:MTH00071 322 M 322
NADHdh pfam00146
NADH dehydrogenase;
14-304 1.81e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 327.89  E-value: 1.81e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180   14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWT-- 91
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAvi 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180   92 PFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSI 171
Cdd:pfam00146  86 PFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  172 TQLHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFI--NS 249
Cdd:pfam00146 166 AQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLggWL 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 164519180  250 SIFFPMPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIW 304
Cdd:pfam00146 246 GPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 14-304 2.78e-100

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 297.81  E-value: 2.78e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWT-- 91
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAvi 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  92 PFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSI 171
Cdd:COG1005   99 PFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVE 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 172 TQ-LHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILF---- 246
Cdd:COG1005  179 AQaGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFlggw 258

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 164519180 247 ----INSSIFFPMPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIW 304
Cdd:COG1005  259 lgpfPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 543.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180   1 MTKLFLYFLPLLYIAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPT 80
Cdd:MTH00071   2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  81 LALALAMLLWTPFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFL 160
Cdd:MTH00071  82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 161 VGSFTLSSFSITQLHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 240
Cdd:MTH00071 162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 241 LTIILFINSSIFFPMP---SVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITPP 317
Cdd:MTH00071 242 LSTILFLGSTYNHLQPelsTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321


                 .
gi 164519180 318 T 318
Cdd:MTH00071 322 M 322
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 14-319 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 510.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPF 93
Cdd:MTH00111  15 IIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  94 PMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQ 173
Cdd:MTH00111  95 PMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQ 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 174 LHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSIFF 253
Cdd:MTH00111 175 EPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLN 254

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 164519180 254 PMP---SVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITPPTT 319
Cdd:MTH00111 255 LPPelfTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 14-317 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 508.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPF 93
Cdd:MTH00134  16 IVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPM 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  94 PMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQ 173
Cdd:MTH00134  96 PMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQ 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 174 LHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSIFF 253
Cdd:MTH00134 176 ESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIP 255

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 164519180 254 PMP---SVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITPP 317
Cdd:MTH00134 256 TLPeltTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 14-319 1.78e-165

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 462.94  E-value: 1.78e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPF 93
Cdd:MTH00104  10 IIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  94 PMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQ 173
Cdd:MTH00104  90 PMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQ 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 174 LHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSIFF 253
Cdd:MTH00104 170 EHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAFHNP 249

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 164519180 254 PMP---SVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITPPTT 319
Cdd:MTH00104 250 YMPelyTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 14-317 2.18e-146

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 414.31  E-value: 2.18e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPF 93
Cdd:MTH00218  12 ILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  94 PMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQ 173
Cdd:MTH00218  92 PLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 174 LHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSIff 253
Cdd:MTH00218 172 ETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGTSL-- 249

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 164519180 254 pmPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITPP 317
Cdd:MTH00218 250 --TTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-319 1.18e-141

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 402.82  E-value: 1.18e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180   1 MTKLFLYFLPLLYIAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPT 80
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  81 LALALAMLLWTPFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFL 160
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 161 VGSFTLSSFSITQLHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 240
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 241 LTIILFINS----SIFFPMPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITP 316
Cdd:MTH00040 241 LSVILFLGGgspfNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILP 320


                 ...
gi 164519180 317 PTT 319
Cdd:MTH00040 321 PNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 14-312 3.30e-119

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 345.19  E-value: 3.30e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPF 93
Cdd:MTH00195  12 IVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPI 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  94 PMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQ 173
Cdd:MTH00195  92 PSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 174 LHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSiff 253
Cdd:MTH00195 172 GFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGG--- 248

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 164519180 254 pmPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISL 312
Cdd:MTH00195 249 --GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFAL 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 17-301 1.31e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 343.78  E-value: 1.31e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  17 VLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPFPMP 96
Cdd:MTH00143  14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  97 IAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQLHT 176
Cdd:MTH00143  94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 177 WLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFI-NSSIFFPM 255
Cdd:MTH00143 174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFgGSSVLFLL 253

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 164519180 256 PSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAF 301
Cdd:MTH00143 254 GGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 14-310 1.11e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 328.65  E-value: 1.11e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPF 93
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  94 PMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQ 173
Cdd:MTH00193  92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 174 LHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSIFf 253
Cdd:MTH00193 172 KYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLL- 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 164519180 254 pmpSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPI 310
Cdd:MTH00193 251 ---SLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
NADHdh pfam00146
NADH dehydrogenase;
14-304 1.81e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 327.89  E-value: 1.81e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180   14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWT-- 91
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAvi 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180   92 PFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSI 171
Cdd:pfam00146  86 PFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  172 TQLHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFI--NS 249
Cdd:pfam00146 166 AQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLggWL 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 164519180  250 SIFFPMPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIW 304
Cdd:pfam00146 246 GPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 17-308 1.56e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 315.44  E-value: 1.56e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  17 VLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPFPMP 96
Cdd:MTH00225  14 LLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSM 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  97 IAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQLHT 176
Cdd:MTH00225  94 FSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYF 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 177 WLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSIFfpMP 256
Cdd:MTH00225 174 WFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFFV--TI 251

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 164519180 257 SVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISL 308
Cdd:MTH00225 252 DLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 14-317 6.07e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 309.74  E-value: 6.07e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLW--T 91
Cdd:MTH00054  12 LVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWgvI 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  92 PFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSI 171
Cdd:MTH00054  92 PYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 172 TQLHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSI 251
Cdd:MTH00054 172 AQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWL 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 164519180 252 FFPMPS------VIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITPP 317
Cdd:MTH00054 252 VISGPTsyfsnfVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 14-317 9.53e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 301.65  E-value: 9.53e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLW--T 91
Cdd:MTH00216  16 IVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWgvI 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  92 PFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSI 171
Cdd:MTH00216  96 PYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 172 TQLH-TWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFI--- 247
Cdd:MTH00216 176 AQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLggw 255

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 164519180 248 -NSSIFFPMPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLITPP 317
Cdd:MTH00216 256 lSPIKYFKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 14-304 2.78e-100

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 297.81  E-value: 2.78e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWT-- 91
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAvi 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  92 PFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSI 171
Cdd:COG1005   99 PFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVE 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 172 TQ-LHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILF---- 246
Cdd:COG1005  179 AQaGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFlggw 258

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 164519180 247 ----INSSIFFPMPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIW 304
Cdd:COG1005  259 lgpfPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
14-304 9.61e-96

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 285.93  E-value: 9.61e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWT-- 91
Cdd:PRK06076  20 LVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAvi 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  92 PFPMPIAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSI 171
Cdd:PRK06076 100 PFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVE 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 172 TQLHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILF----- 246
Cdd:PRK06076 180 AQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFlggwl 259

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 247 --INSSIFFPmPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIW 304
Cdd:PRK06076 260 ppFPLGGGIP-GAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 18-315 1.16e-89

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 270.11  E-value: 1.16e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  18 LLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPFPMPI 97
Cdd:MTH00010  17 LLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKH 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  98 AFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQlHTW 177
Cdd:MTH00010  97 PSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ-YSW 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 178 LLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSIFFPMPS 257
Cdd:MTH00010 176 ILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFIPSIFISD 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 164519180 258 VIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIwqISLPISLLIT 315
Cdd:MTH00010 256 LMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMFLLL 311
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 16-317 6.77e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 264.19  E-value: 6.77e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  16 PVLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPFPM 95
Cdd:MTH00029  19 PLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTM 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  96 P--IAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQ 173
Cdd:MTH00029  99 DqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQ 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 174 LHTWLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINS--SI 251
Cdd:MTH00029 179 RSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGGwlSP 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 252 FFPMPSVI-----------------MMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQISLPISLLI 314
Cdd:MTH00029 259 LDGIPTPPeafsifeqiasskssfwFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFNG 338


                 ...
gi 164519180 315 TPP 317
Cdd:MTH00029 339 VPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 17-301 1.64e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 205.13  E-value: 1.64e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  17 VLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPFPMP 96
Cdd:MTH00090   9 ILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYF 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  97 IAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTL-SSFSITQLH 175
Cdd:MTH00090  89 FDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFvSSFSLSLFV 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 176 TWlllptwplaLMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSIFFpm 255
Cdd:MTH00090 169 IY---------LPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLM-- 237

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 164519180 256 pSVIMMakaaslsMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAF 301
Cdd:MTH00090 238 -LFLIF-------SLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIF 275
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 17-292 9.31e-52

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 172.42  E-value: 9.31e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  17 VLLAVAFFTLIERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWTPFPMP 96
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  97 IAFSDMNLGILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFTLSSFSITQLHT 176
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 177 WLLLPtwPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFINSSIFFPMP 256
Cdd:MTH00058 174 VLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVSIML 251

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 164519180 257 SVIMmakaaslsMVFLWVRASYPRFRYDQLMHLVWK 292
Cdd:MTH00058 252 LFHL--------LFFMWARATLPRVRYDYFVNFFWE 279
ndhA CHL00032
NADH dehydrogenase subunit 1
 27-299 7.37e-46

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 158.96  E-value: 7.37e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  27 IERKVLGYMQHRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTSSQILFLLAPTLALALAMLLWT--PFPMPIAFSDMNL 104
Cdd:CHL00032  50 LEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLviPFGYHLVLADLSI 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 105 GILFILAISSLMVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSftLSSFSITQLHTWLLLPTWP 184
Cdd:CHL00032 130 GVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS--LSTVDIVEAQSKYGFWGWN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 185 L------ALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLTIILFI---NSSI-FFP 254
Cdd:CHL00032 208 LwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLggwNLSIpYIF 287

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 164519180 255 MPS-----------------VIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITL 299
Cdd:CHL00032 288 IPElfeinktggvfgttigiFITLAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
14-306 8.26e-30

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 114.90  E-value: 8.26e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  14 IAPVLLAVA---FFTLIERKVLGYMQHRKGPnivgpyGLLQPIADGIKLFIKEPIRPSTSSQI-----LFLLAPTLALAL 85
Cdd:COG0650    8 LLQLLLALLlapLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLfraapYVALAAMLLAAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180  86 AMLLWTPFPMPIAFSDMnLGILFILAISSLMvytILGSGWASNSKYALIGALRAVAQTISYEVTLALIILSVIFLVGSFT 165
Cdd:COG0650   82 LVPVLTTGPPLSFSGDL-IVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519180 166 LSSFSITQLHT---WLLLPTWPLALMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLT 242
Cdd:COG0650  158 LSDIVAYQAAHgplLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLF 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 164519180 243 IILFI--NSSIFFPMPSVIMMAKAASLSMVFLWVRASYPRFRYDQLMHLVWKNFLPITLAFTIWQI 306
Cdd:COG0650  238 VNLFLpwGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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