mRNA 3'-end-processing protein yth-1 [Neurospora crassa OR74A]
zinc finger CCCH domain-containing protein( domain architecture ID 708395)
zinc finger CCCH domain-containing protein similar to cleavage and polyadenylation specificity factor (CPSF) subunit 4, which is part of the complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
YTH1 super family | cl25862 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
34-211 | 1.94e-33 | ||||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; The actual alignment was detected with superfamily member COG5084: Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 124.21 E-value: 1.94e-33
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Name | Accession | Description | Interval | E-value | ||||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
34-211 | 1.94e-33 | ||||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 124.21 E-value: 1.94e-33
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
99-117 | 4.42e-03 | ||||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 33.93 E-value: 4.42e-03
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ZnF_C3H1 | smart00356 | zinc finger; |
94-119 | 9.02e-03 | ||||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 33.37 E-value: 9.02e-03
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Name | Accession | Description | Interval | E-value | ||||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
34-211 | 1.94e-33 | ||||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 124.21 E-value: 1.94e-33
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
99-117 | 4.42e-03 | ||||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 33.93 E-value: 4.42e-03
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ZnF_C3H1 | smart00356 | zinc finger; |
94-119 | 9.02e-03 | ||||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 33.37 E-value: 9.02e-03
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Blast search parameters | ||||
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