NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|347968336|ref|XP_312247|]
View 

AGAP002677-PA [Anopheles gambiae str. PEST]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YebA super family cl34222
Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, ...
 160-227 3.49e-05

Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG1305:

Pssm-ID: 440916 [Multi-domain]  Cd Length: 174  Bit Score: 45.38  E-value: 3.49e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 347968336 160 QEIAAFVADYIVYEPlvdqvNMPTRLVSPDEVLKRRRANSFELATLLASFLIGNGFAACVVSGYATRE 227
Cdd:COG1305   82 RALYDWVRDNIRYDP-----GSTGVGTTALETLERRRGVCRDFAHLLVALLRALGIPARYVSGYLPGE 144
 
Name Accession Description Interval E-value
YebA COG1305
Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, ...
 160-227 3.49e-05

Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440916 [Multi-domain]  Cd Length: 174  Bit Score: 45.38  E-value: 3.49e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 347968336 160 QEIAAFVADYIVYEPlvdqvNMPTRLVSPDEVLKRRRANSFELATLLASFLIGNGFAACVVSGYATRE 227
Cdd:COG1305   82 RALYDWVRDNIRYDP-----GSTGVGTTALETLERRRGVCRDFAHLLVALLRALGIPARYVSGYLPGE 144
 
Name Accession Description Interval E-value
YebA COG1305
Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, ...
 160-227 3.49e-05

Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440916 [Multi-domain]  Cd Length: 174  Bit Score: 45.38  E-value: 3.49e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 347968336 160 QEIAAFVADYIVYEPlvdqvNMPTRLVSPDEVLKRRRANSFELATLLASFLIGNGFAACVVSGYATRE 227
Cdd:COG1305   82 RALYDWVRDNIRYDP-----GSTGVGTTALETLERRRGVCRDFAHLLVALLRALGIPARYVSGYLPGE 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH