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Conserved domains on  [gi|2517823283|ref|XP_057245544|]
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actin filament-associated protein 1-like 2, partial [Malurus melanocephalus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PH-like super family cl17171
Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like ...
124-153 9.97e-10

Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.


The actual alignment was detected with superfamily member cd13306:

Pssm-ID: 473070  Cd Length: 107  Bit Score: 52.87  E-value: 9.97e-10
                          10        20        30
                  ....*....|....*....|....*....|
gi 2517823283 124 EAQLCGFLWRKRWLGQWAKQLFIVREHVLL 153
Cdd:cd13306    11 DARICAFLLRKKRFGQWAKQLCVIKDNRLL 40
PRK14954 super family cl33039
DNA polymerase III subunits gamma and tau; Provisional
8-152 2.87e-04

DNA polymerase III subunits gamma and tau; Provisional


The actual alignment was detected with superfamily member PRK14954:

Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 39.93  E-value: 2.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2517823283   8 PSPAPPQARSSPGSRTADAAGGR-ACECRPGSALSPHGgnkVPGVPPSPSADGSYEdAEAPGPGRTGGGDSDSSHYEsyg 86
Cdd:PRK14954  395 PEPDLPQPDRHPGPAKPEAPGARpAELPSPASAPTPEQ---QPPVARSAPLPPSPQ-ASAPRNVASGKPGVDLGSWQ--- 467
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2517823283  87 e*eeddD*EE*EGVTDRAHYLRWPSATSAEAEPPGRPEAQLCGFlwRKRWlGQWAKQLFIVREHVL 152
Cdd:PRK14954  468 ------GKFMNFTRNGSRKQPVQASSSDAAQTGVFEGVAELEKL--RMEW-NQFLEHLLKKGQKVL 524
 
Name Accession Description Interval E-value
PH1_AFAP cd13306
Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1; There are ...
124-153 9.97e-10

Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1; There are 3 members of the AFAP family of adaptor proteins: AFAP1, AFAP1L1, and AFAP1L2/XB130. AFAP1 is a cSrc binding partner and actin cross-linking protein. AFAP1L1 is thought to play a similar role to AFAP1 in terms of being an actin cross-linking protein, but it preferentially binds to cortactin and not cSrc, thereby playing a role in invadosome formation. AFAP1L2 is a cSrc binding protein, but does not bind to actin filaments. AFAP1L2 acts as an intermediary between the RET/PTC kinase and PI-3kinase pathway in the thyroid. The AFAPs share a similar structure of a SH3 binding motif, 3 SH2 binding motifs, 2 PH domains, a coiled-coil region corresponding to the AFAP1 leucine zipper, and an actin binding domain. The amino terminal PH1 domain of AFAP1 has been known to function in intra-molecular regulation of AFAP1. In addition, the PH1 domain is a binding partner for PKCa and phospholipids. This cd is the first PH domain of AFAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270116  Cd Length: 107  Bit Score: 52.87  E-value: 9.97e-10
                          10        20        30
                  ....*....|....*....|....*....|
gi 2517823283 124 EAQLCGFLWRKRWLGQWAKQLFIVREHVLL 153
Cdd:cd13306    11 DARICAFLLRKKRFGQWAKQLCVIKDNRLL 40
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
8-152 2.87e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 39.93  E-value: 2.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2517823283   8 PSPAPPQARSSPGSRTADAAGGR-ACECRPGSALSPHGgnkVPGVPPSPSADGSYEdAEAPGPGRTGGGDSDSSHYEsyg 86
Cdd:PRK14954  395 PEPDLPQPDRHPGPAKPEAPGARpAELPSPASAPTPEQ---QPPVARSAPLPPSPQ-ASAPRNVASGKPGVDLGSWQ--- 467
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2517823283  87 e*eeddD*EE*EGVTDRAHYLRWPSATSAEAEPPGRPEAQLCGFlwRKRWlGQWAKQLFIVREHVL 152
Cdd:PRK14954  468 ------GKFMNFTRNGSRKQPVQASSSDAAQTGVFEGVAELEKL--RMEW-NQFLEHLLKKGQKVL 524
 
Name Accession Description Interval E-value
PH1_AFAP cd13306
Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1; There are ...
124-153 9.97e-10

Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1; There are 3 members of the AFAP family of adaptor proteins: AFAP1, AFAP1L1, and AFAP1L2/XB130. AFAP1 is a cSrc binding partner and actin cross-linking protein. AFAP1L1 is thought to play a similar role to AFAP1 in terms of being an actin cross-linking protein, but it preferentially binds to cortactin and not cSrc, thereby playing a role in invadosome formation. AFAP1L2 is a cSrc binding protein, but does not bind to actin filaments. AFAP1L2 acts as an intermediary between the RET/PTC kinase and PI-3kinase pathway in the thyroid. The AFAPs share a similar structure of a SH3 binding motif, 3 SH2 binding motifs, 2 PH domains, a coiled-coil region corresponding to the AFAP1 leucine zipper, and an actin binding domain. The amino terminal PH1 domain of AFAP1 has been known to function in intra-molecular regulation of AFAP1. In addition, the PH1 domain is a binding partner for PKCa and phospholipids. This cd is the first PH domain of AFAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270116  Cd Length: 107  Bit Score: 52.87  E-value: 9.97e-10
                          10        20        30
                  ....*....|....*....|....*....|
gi 2517823283 124 EAQLCGFLWRKRWLGQWAKQLFIVREHVLL 153
Cdd:cd13306    11 DARICAFLLRKKRFGQWAKQLCVIKDNRLL 40
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
8-152 2.87e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 39.93  E-value: 2.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2517823283   8 PSPAPPQARSSPGSRTADAAGGR-ACECRPGSALSPHGgnkVPGVPPSPSADGSYEdAEAPGPGRTGGGDSDSSHYEsyg 86
Cdd:PRK14954  395 PEPDLPQPDRHPGPAKPEAPGARpAELPSPASAPTPEQ---QPPVARSAPLPPSPQ-ASAPRNVASGKPGVDLGSWQ--- 467
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2517823283  87 e*eeddD*EE*EGVTDRAHYLRWPSATSAEAEPPGRPEAQLCGFlwRKRWlGQWAKQLFIVREHVL 152
Cdd:PRK14954  468 ------GKFMNFTRNGSRKQPVQASSSDAAQTGVFEGVAELEKL--RMEW-NQFLEHLLKKGQKVL 524
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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