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Conserved domains on  [gi|2508744542|ref|XP_056116499|]
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zinc finger BED domain-containing protein 4-like [Rhinichthys klamathensis goyatoka]

Protein Classification

ZnF_BED and Dimer_Tnp_hAT domain-containing protein( domain architecture ID 10652361)

ZnF_BED and Dimer_Tnp_hAT domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 521-602 1.45e-21

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


:

Pssm-ID: 399013  Cd Length: 83  Bit Score: 88.86  E-value: 1.45e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508744542 521 ELERYFREPVIDRKSG-NPYDWWKHNTNRFTRLSVLARQYLSCPPSSVASERVFSTIGNIYEDRRSSLKGENAEKLCFLY 599
Cdd:pfam05699   1 ELDQYLSEPVLPRNEDfDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLCIE 80


                  ...
gi 2508744542 600 YNL 602
Cdd:pfam05699  81 DWL 83
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 9-55 2.07e-07

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


:

Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 47.81  E-value: 2.07e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2508744542    9 VWEHFTK-----GPSGTVTCNICTASVSQGSGSlkfkNTSNLWAHLKSKHKE 55
Cdd:smart00614   2 VWKHFTLilekdNGKQRAKCKYCGKKLSRSSKG----GTSNLRRHLRRKHPA 49
 
Name Accession Description Interval E-value
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 521-602 1.45e-21

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 88.86  E-value: 1.45e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508744542 521 ELERYFREPVIDRKSG-NPYDWWKHNTNRFTRLSVLARQYLSCPPSSVASERVFSTIGNIYEDRRSSLKGENAEKLCFLY 599
Cdd:pfam05699   1 ELDQYLSEPVLPRNEDfDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLCIE 80


                  ...
gi 2508744542 600 YNL 602
Cdd:pfam05699  81 DWL 83
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 9-55 2.07e-07

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 47.81  E-value: 2.07e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2508744542    9 VWEHFTK-----GPSGTVTCNICTASVSQGSGSlkfkNTSNLWAHLKSKHKE 55
Cdd:smart00614   2 VWKHFTLilekdNGKQRAKCKYCGKKLSRSSKG----GTSNLRRHLRRKHPA 49
zf-BED pfam02892
BED zinc finger;
7-54 3.91e-06

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 43.90  E-value: 3.91e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2508744542   7 SQVWEHFTKGP--SGTVTCNICTASVSQGsgslkfKNTSNLWAHLKSKHK 54
Cdd:pfam02892   1 SKVWKYFRELPldETKAVCRYCGKILSRG------GGTSNLIRHLRRKHP 44
 
Name Accession Description Interval E-value
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 521-602 1.45e-21

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 88.86  E-value: 1.45e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508744542 521 ELERYFREPVIDRKSG-NPYDWWKHNTNRFTRLSVLARQYLSCPPSSVASERVFSTIGNIYEDRRSSLKGENAEKLCFLY 599
Cdd:pfam05699   1 ELDQYLSEPVLPRNEDfDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLCIE 80


                  ...
gi 2508744542 600 YNL 602
Cdd:pfam05699  81 DWL 83
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 9-55 2.07e-07

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 47.81  E-value: 2.07e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2508744542    9 VWEHFTK-----GPSGTVTCNICTASVSQGSGSlkfkNTSNLWAHLKSKHKE 55
Cdd:smart00614   2 VWKHFTLilekdNGKQRAKCKYCGKKLSRSSKG----GTSNLRRHLRRKHPA 49
zf-BED pfam02892
BED zinc finger;
7-54 3.91e-06

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 43.90  E-value: 3.91e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2508744542   7 SQVWEHFTKGP--SGTVTCNICTASVSQGsgslkfKNTSNLWAHLKSKHK 54
Cdd:pfam02892   1 SKVWKYFRELPldETKAVCRYCGKILSRG------GGTSNLIRHLRRKHP 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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