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Conserved domains on  [gi|2462534788|ref|XP_054229394|]
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ubiquitin carboxyl-terminal hydrolase 44 isoform X3 [Homo sapiens]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 10489794)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
29-91 1.53e-23

Zn-finger in ubiquitin-hydrolases and other protein;


:

Pssm-ID: 460464  Cd Length: 63  Bit Score: 93.48  E-value: 1.53e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534788  29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLNDNA 91
Cdd:pfam02148   1 CSLCGNTSNLWLCLTCGHVGCGRYQNSHALEHYEETGHPLAVNLSTLTVYCYPCDDYVHDPSL 63
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
273-478 8.79e-18

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member pfam00443:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 310  Bit Score: 84.03  E-value: 8.79e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 273 TGLRNLGNTCYMNSVLQVLSHLLIFRQCFLKldlnqwlamtasektrsckhppvtdtvvyqmnecqekdtgfvcsrqssl 352
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLR------------------------------------------------- 31
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 353 ssglsggaskgrkMELIQPKEPTSQYISLCHELHTLFQVMWSGKW-ALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCEL 431
Cdd:pfam00443  32 -------------ISPLSEDSRYNKDINLLCALRDLFKALQKNSKsSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFL 98
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2462534788 432 LDKIQRELEttgtslpaliptsqRKLIKQVLNVVNNIFHGQLLS--QCL 478
Cdd:pfam00443  99 LDGLHEDLN--------------GNHSTENESLITDLFRGQLKSrlKCL 133
 
Name Accession Description Interval E-value
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
29-91 1.53e-23

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 93.48  E-value: 1.53e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534788  29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLNDNA 91
Cdd:pfam02148   1 CSLCGNTSNLWLCLTCGHVGCGRYQNSHALEHYEETGHPLAVNLSTLTVYCYPCDDYVHDPSL 63
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
273-478 8.79e-18

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 84.03  E-value: 8.79e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 273 TGLRNLGNTCYMNSVLQVLSHLLIFRQCFLKldlnqwlamtasektrsckhppvtdtvvyqmnecqekdtgfvcsrqssl 352
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLR------------------------------------------------- 31
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 353 ssglsggaskgrkMELIQPKEPTSQYISLCHELHTLFQVMWSGKW-ALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCEL 431
Cdd:pfam00443  32 -------------ISPLSEDSRYNKDINLLCALRDLFKALQKNSKsSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFL 98
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2462534788 432 LDKIQRELEttgtslpaliptsqRKLIKQVLNVVNNIFHGQLLS--QCL 478
Cdd:pfam00443  99 LDGLHEDLN--------------GNHSTENESLITDLFRGQLKSrlKCL 133
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
28-73 9.32e-14

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 65.46  E-value: 9.32e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2462534788   28 HCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVN 73
Cdd:smart00290   1 RCSVCGTIENLWLCLTCGQVGCGRYQNGHALEHFEETGHPLVVKLG 46
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-438 2.62e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 58.54  E-value: 2.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSHLLIFRQCFLkldlnqwlamtasektrSCKHPPVTDTvvyqmnecqekdtgfvcsrqssls 353
Cdd:cd02660     2 GLINLGATCFMNVILQALLHNPLLRNYFL-----------------SDRHSCTCLS------------------------ 40
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 354 sglsggaskgrkmeliqpkepTSQYISLCHELHTLFQVMW-SGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELL 432
Cdd:cd02660    41 ---------------------CSPNSCLSCAMDEIFQEFYySGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLL 99

                  ....*.
gi 2462534788 433 DKIQRE 438
Cdd:cd02660   100 DQLHTH 105
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
222-459 2.35e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 56.82  E-value: 2.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 222 STIIEIVSVQVPAQTPASPAK-DKVLSTSENEISQKVS------DSSVKR--RPIV-TPGVTGLRNLGNTCYMNSVLQVL 291
Cdd:COG5560   205 SFFRRYRVLASDGRVLHPLTRlELFEDRSVLLLSKITRnpdwlvDSIVDDhnRSINkEAGTCGLRNLGNTCYMNSALQCL 284
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 292 SHLLIFRQCFLkldlnqwlamtasektrsckhppvTDTVVYQMNEcqekdtgfvcsrqsslssglsggaskgrkmeliqp 371
Cdd:COG5560   285 MHTWELRDYFL------------------------SDEYEESINE----------------------------------- 305
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 372 KEPTSQYISLCHELHTLFQVMWSGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKIQREL----ETTGTSLP 447
Cdd:COG5560   306 ENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLnriiKKPYTSKP 385
                         250
                  ....*....|..
gi 2462534788 448 ALIPTSQRKLIK 459
Cdd:COG5560   386 DLSPGDDVVVKK 397
 
Name Accession Description Interval E-value
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
29-91 1.53e-23

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 93.48  E-value: 1.53e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534788  29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLNDNA 91
Cdd:pfam02148   1 CSLCGNTSNLWLCLTCGHVGCGRYQNSHALEHYEETGHPLAVNLSTLTVYCYPCDDYVHDPSL 63
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
273-478 8.79e-18

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 84.03  E-value: 8.79e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 273 TGLRNLGNTCYMNSVLQVLSHLLIFRQCFLKldlnqwlamtasektrsckhppvtdtvvyqmnecqekdtgfvcsrqssl 352
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLR------------------------------------------------- 31
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 353 ssglsggaskgrkMELIQPKEPTSQYISLCHELHTLFQVMWSGKW-ALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCEL 431
Cdd:pfam00443  32 -------------ISPLSEDSRYNKDINLLCALRDLFKALQKNSKsSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFL 98
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2462534788 432 LDKIQRELEttgtslpaliptsqRKLIKQVLNVVNNIFHGQLLS--QCL 478
Cdd:pfam00443  99 LDGLHEDLN--------------GNHSTENESLITDLFRGQLKSrlKCL 133
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
28-73 9.32e-14

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 65.46  E-value: 9.32e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2462534788   28 HCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVN 73
Cdd:smart00290   1 RCSVCGTIENLWLCLTCGQVGCGRYQNGHALEHFEETGHPLVVKLG 46
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-438 2.62e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 58.54  E-value: 2.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSHLLIFRQCFLkldlnqwlamtasektrSCKHPPVTDTvvyqmnecqekdtgfvcsrqssls 353
Cdd:cd02660     2 GLINLGATCFMNVILQALLHNPLLRNYFL-----------------SDRHSCTCLS------------------------ 40
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 354 sglsggaskgrkmeliqpkepTSQYISLCHELHTLFQVMW-SGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELL 432
Cdd:cd02660    41 ---------------------CSPNSCLSCAMDEIFQEFYySGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLL 99

                  ....*.
gi 2462534788 433 DKIQRE 438
Cdd:cd02660   100 DQLHTH 105
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
222-459 2.35e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 56.82  E-value: 2.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 222 STIIEIVSVQVPAQTPASPAK-DKVLSTSENEISQKVS------DSSVKR--RPIV-TPGVTGLRNLGNTCYMNSVLQVL 291
Cdd:COG5560   205 SFFRRYRVLASDGRVLHPLTRlELFEDRSVLLLSKITRnpdwlvDSIVDDhnRSINkEAGTCGLRNLGNTCYMNSALQCL 284
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 292 SHLLIFRQCFLkldlnqwlamtasektrsckhppvTDTVVYQMNEcqekdtgfvcsrqsslssglsggaskgrkmeliqp 371
Cdd:COG5560   285 MHTWELRDYFL------------------------SDEYEESINE----------------------------------- 305
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 372 KEPTSQYISLCHELHTLFQVMWSGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKIQREL----ETTGTSLP 447
Cdd:COG5560   306 ENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLnriiKKPYTSKP 385
                         250
                  ....*....|..
gi 2462534788 448 ALIPTSQRKLIK 459
Cdd:COG5560   386 DLSPGDDVVVKK 397
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
273-478 1.12e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 53.43  E-value: 1.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 273 TGLRNLGNTCYMNSVLQVLSHLlifrqcflkldlnqwlamtasektrsckhPPVTDTVVYQM--NECQEKDTGFVCsrqs 350
Cdd:cd02661     2 AGLQNLGNTCFLNSVLQCLTHT-----------------------------PPLANYLLSREhsKDCCNEGFCMMC---- 48
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 351 slssglsggaskgrkmeliqpkeptsqyislCHELHTLfQVMWSGKWALVSPFamLHSVWRLI-PAFRGYAQQDAQEFLC 429
Cdd:cd02661    49 -------------------------------ALEAHVE-RALASSGPGSAPRI--FSSNLKQIsKHFRIGRQEDAHEFLR 94
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462534788 430 ELLDKIQRelettgTSLPALIPTSQRKLIKQVLNVVNNIFHGQLLSQ--CL 478
Cdd:cd02661    95 YLLDAMQK------ACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQvkCL 139
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
274-331 2.43e-07

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 52.10  E-value: 2.43e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSHllifRQC----FLKLDLNQWLAMTASEKTRSCKHPPVTDTVV 331
Cdd:cd02257     1 GLNNLGNTCYLNSVLQALFS----EQQdaheFLLFLLDKLHEELKKSSKRTSDSSSLKSLIH 58
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-293 2.81e-07

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 51.52  E-value: 2.81e-07
                          10        20
                  ....*....|....*....|
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSH 293
Cdd:cd02674     1 GLRNLGNTCYMNSILQCLSA 20
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-440 9.12e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 50.88  E-value: 9.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSHLLIFRQCFLKLDLNQwlamTASEKTRSCKHPPVTDTVVYQMnecqekdtgfvcsrqssls 353
Cdd:cd02668     1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTE----DAELKNMPPDKPHEPQTIIDQL------------------- 57
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 354 sglsggaskgrkmeliqpkeptsQYIslchelhtlFQVMWSGKWALVSPFAmlhsvwrLIPAFR--GYAQQDAQEFLCEL 431
Cdd:cd02668    58 -----------------------QLI---------FAQLQFGNRSVVDPSG-------FVKALGldTGQQQDAQEFSKLF 98

                  ....*....
gi 2462534788 432 LDKIQRELE 440
Cdd:cd02668    99 LSLLEAKLS 107
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-304 9.71e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 50.78  E-value: 9.71e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSHLLIFRQCFLKL 304
Cdd:cd02658     1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDL 31
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-445 1.58e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 50.02  E-value: 1.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 274 GLRNLGNTCYMNSVLQVLshllifrqcflkldlnqwlamtasektRSCkhpPVTDTVVYQMNECQEKDTGfvcsrqssls 353
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCL---------------------------RSV---PELRDALKNYNPARRGANQ---------- 40
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 354 sglsggaskgrkmeliqpkepTSQYISLchELHTLFQVMwSGKWALVSPFAMLHSVWRLIPAF------RGYAQQDAQEF 427
Cdd:cd02657    41 ---------------------SSDNLTN--ALRDLFDTM-DKKQEPVPPIEFLQLLRMAFPQFaekqnqGGYAQQDAEEC 96
                         170
                  ....*....|....*...
gi 2462534788 428 LCELLDKIQRELETTGTS 445
Cdd:cd02657    97 WSQLLSVLSQKLPGAGSK 114
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
274-291 8.48e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 47.49  E-value: 8.48e-06
                          10
                  ....*....|....*...
gi 2462534788 274 GLRNLGNTCYMNSVLQVL 291
Cdd:COG5533     1 GLPNLGNTCFMNSVLQIL 18
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-309 1.14e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 47.25  E-value: 1.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSHLLIFRQCFLKLDLNQW 309
Cdd:cd02659     4 GLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTED 39
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-306 1.59e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 47.10  E-value: 1.59e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSHLLIFRQCFLKLDL 306
Cdd:cd02664     1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNL 33
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
270-489 2.18e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 46.42  E-value: 2.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 270 PGVTGLRNLGNTCYMNSVLQVLshllifrqCFlkldlnqwlamtASEKTRSCKHppvtdtvvyqmnecqekdtgfVCSrq 349
Cdd:cd02671    22 LPFVGLNNLGNTCYLNSVLQVL--------YF------------CPGFKHGLKH---------------------LVS-- 58
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 350 sslssglsggaskgrkmeLIQPKEPTSQYISLCHELHTlfqvmwsGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLC 429
Cdd:cd02671    59 ------------------LISSVEQLQSSFLLNPEKYN-------DELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQ 113
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534788 430 ELLDKIQrelettgtslpaliptsqrklikqvlNVVNNIFHGQLLS--QCLlalnPAECFTE 489
Cdd:cd02671   114 CILGNIQ--------------------------ELVEKDFQGQLVLrtRCL----ECETFTE 145
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
385-478 3.27e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 45.76  E-value: 3.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 385 LHTLFQVMWSGK--WALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKIQRELETTGTSLPALIPTSQRKLIKQVL 462
Cdd:cd02663    27 LKDLFESISEQKkrTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQP 106
                          90
                  ....*....|....*...
gi 2462534788 463 NVVNNIFHGQLLSQ--CL 478
Cdd:cd02663   107 TWVHEIFQGILTNEtrCL 124
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
377-477 5.47e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 45.07  E-value: 5.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534788 377 QYISLCHELHTLFQVmwsgkwalvSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKIQrelettgtslpaliptsqrk 456
Cdd:cd02667    16 QNLSQTPALRELLSE---------TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLR-------------------- 66
                          90       100
                  ....*....|....*....|.
gi 2462534788 457 likqvlNVVNNIFHGQLLSQC 477
Cdd:cd02667    67 ------TFIDSIFGGELTSTI 81
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
421-496 6.14e-05

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 44.78  E-value: 6.14e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534788 421 QQDAQEFLCELLDKIQRELETTgtslpalipTSQRKLIKQVLNVVNNIFHGQLLSQCLLALNPAECFTEVTIHFLS 496
Cdd:cd02257    22 QQDAHEFLLFLLDKLHEELKKS---------SKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLS 88
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-308 1.02e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 43.89  E-value: 1.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSHLLIFRQcFLKLDLNQ 308
Cdd:cd02662     1 GLVNLGNTCFMNSVLQALASLPSLIE-YLEEFLEQ 34
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
270-316 2.95e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 43.08  E-value: 2.95e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2462534788 270 PGVTGLRNLGNTCYMNSVLQVLSHLLIFRQCFLKLDLNQWLAMTASE 316
Cdd:cd02669   117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSE 163
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
274-303 3.00e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 42.76  E-value: 3.00e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 2462534788 274 GLRNLGNTCYMNSVLQVLSHLLIFRQCFLK 303
Cdd:cd02667     1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE 30
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
271-304 4.04e-04

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 43.32  E-value: 4.04e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2462534788  271 GVTGLRNLGNTCYMNSVLQVLSHLLIFRQCFLKL 304
Cdd:COG5077    192 GYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGI 225
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
273-289 1.70e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 40.55  E-value: 1.70e-03
                          10
                  ....*....|....*..
gi 2462534788 273 TGLRNLGNTCYMNSVLQ 289
Cdd:cd02666     2 AGLDNIGNTCYLNSLLQ 18
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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