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Conserved domains on  [gi|2462617931|ref|XP_054215807|]
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glutamate-rich protein 1 isoform X9 [Homo sapiens]

Protein Classification

ICP22 family protein( domain architecture ID 708738)

ICP22 family protein similar to Herpesvirus saimiri transcriptional regulator ICP22 homolog (also known as immediate-early protein) that regulates the transcription of alphaherpesviruses and their host genes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03169 super family cl27451
hypothetical protein; Provisional
 191-335 1.00e-05

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA03169:

Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 47.66  E-value: 1.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 191 QPEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEdltrARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PHA03169   47 APPAPTTSGPQVRAVAEQGHRQTESDT---ETAEESRHGEKEERGQGGPS----GSGSESVGSPTPSPSGSAEELASGLS 119

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462617931 271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PHA03169  120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
 
Name Accession Description Interval E-value
PHA03169 PHA03169
hypothetical protein; Provisional
 191-335 1.00e-05

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 47.66  E-value: 1.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 191 QPEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEdltrARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PHA03169   47 APPAPTTSGPQVRAVAEQGHRQTESDT---ETAEESRHGEKEERGQGGPS----GSGSESVGSPTPSPSGSAEELASGLS 119

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462617931 271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PHA03169  120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 132-330 5.04e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 46.14  E-value: 5.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  132 EQAELEKQQSLLQEKSQRQHTDGTTISKNKKRKLKKKQQIKRKKAAGLAAKAAGVSFMYQPEDSSNEGEGVGEAcEEDGV 211
Cdd:TIGR00927  661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIET-GEEGE 739

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  212 DTSEEDPTLA---GEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGVDTIEEDL------ 282
Cdd:TIGR00927  740 EVEDEGEGEAegkHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDehegqs 819

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462617931  283 -TRAGEEDGKDTREEDGADASEEDPTWAGEE--------EGADSGEEDGADASEEDD 330
Cdd:TIGR00927  820 eTQADDTEVKDETGEQELNAENQGEAKQDEKgvdggggsDGGDSEEEEEEEEEEEEE 876
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 251-331 3.26e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 43.24  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 251 ADASEEDPTPAGEEDVKDAREEDGvdtiEEDLTRAGEEDGKDTREEDGADASEEDPTwAGEEEGADSGEEDGADASEEDD 330
Cdd:COG4547   208 AEELGEDEDEEDEDDEDDSGEQEE----DEEDGEDEDEESDEGAEAEDAEASGDDAE-EGESEAAEAESDEMAEEAEGED 282


                  .
gi 2462617931 331 T 331
Cdd:COG4547   283 S 283
 
Name Accession Description Interval E-value
PHA03169 PHA03169
hypothetical protein; Provisional
 191-335 1.00e-05

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 47.66  E-value: 1.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 191 QPEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEdltrARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PHA03169   47 APPAPTTSGPQVRAVAEQGHRQTESDT---ETAEESRHGEKEERGQGGPS----GSGSESVGSPTPSPSGSAEELASGLS 119

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462617931 271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PHA03169  120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
PHA03169 PHA03169
hypothetical protein; Provisional
 192-365 4.05e-05

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 45.73  E-value: 4.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 192 PEDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDltraRQEEGADASEEDPTPAGEEDVKDARE 271
Cdd:PHA03169  105 PSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES----HNPSPNQQPSSFLQPSHEDSPEEPEP 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 272 EDGVDtiEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGeeDGADASEEDDTITNEKAHSIlNFLKSTQEMY 351
Cdd:PHA03169  181 PTSEP--EPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSP--NTQQAVEHEDEPTEPEREGP-PFPGHRSHSY 255

                         170
                  ....*....|....
gi 2462617931 352 FYDAWGRPTVMPGV 365
Cdd:PHA03169  256 TVVGWKPSTRPGGV 269
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 132-330 5.04e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 46.14  E-value: 5.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  132 EQAELEKQQSLLQEKSQRQHTDGTTISKNKKRKLKKKQQIKRKKAAGLAAKAAGVSFMYQPEDSSNEGEGVGEAcEEDGV 211
Cdd:TIGR00927  661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIET-GEEGE 739

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  212 DTSEEDPTLA---GEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGVDTIEEDL------ 282
Cdd:TIGR00927  740 EVEDEGEGEAegkHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDehegqs 819

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462617931  283 -TRAGEEDGKDTREEDGADASEEDPTWAGEE--------EGADSGEEDGADASEEDD 330
Cdd:TIGR00927  820 eTQADDTEVKDETGEQELNAENQGEAKQDEKgvdggggsDGGDSEEEEEEEEEEEEE 876
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 197-336 9.89e-05

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 45.16  E-value: 9.89e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  197 NEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGVD 276
Cdd:PTZ00341   930 NQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEE 1009

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462617931  277 TIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGE-EEGADSG-EEDGADASEEDDTITNEK 336
Cdd:PTZ00341  1010 NVEENIEENVEEYDEENVEEVEENVEEYDEENVEEiEENAEENvEENIEENIEEYDEENVEE 1071
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 251-331 3.26e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 43.24  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 251 ADASEEDPTPAGEEDVKDAREEDGvdtiEEDLTRAGEEDGKDTREEDGADASEEDPTwAGEEEGADSGEEDGADASEEDD 330
Cdd:COG4547   208 AEELGEDEDEEDEDDEDDSGEQEE----DEEDGEDEDEESDEGAEAEDAEASGDDAE-EGESEAAEAESDEMAEEAEGED 282


                  .
gi 2462617931 331 T 331
Cdd:COG4547   283 S 283
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 193-335 3.85e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 43.45  E-value: 3.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVkDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREE 272
Cdd:TIGR00927  756 ETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDG-EMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGE 834

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462617931  273 DGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:TIGR00927  835 QELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 207-316 4.93e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 42.86  E-value: 4.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 207 EEDGVDTSEEDPtlaGEEDVKDTREEDGADASEEDltrarQEEGADASEEDPTPAGEEDvkDAREEDGVDTIEEDLtrag 286
Cdd:COG4547   209 EELGEDEDEEDE---DDEDDSGEQEEDEEDGEDED-----EESDEGAEAEDAEASGDDA--EEGESEAAEAESDEM---- 274

                          90       100       110
                  ....*....|....*....|....*....|
gi 2462617931 287 EEDGKDTREEDGADASEEDPTWAGEEEGAD 316
Cdd:COG4547   275 AEEAEGEDSEEPGEPWRPNAPPPDDPADPD 304
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 209-357 6.41e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 42.47  E-value: 6.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  209 DGVDTSEEdptlageEDVKDTREEDGADASEEDLTRAR--QEEGADASEE---DPTPAGEEDVKDAREEDGVDTIEEDLT 283
Cdd:PTZ00341   426 DMLDGSED-------ESVEDNEEEHSGDANEEELSVDEhvEEHNADDSGEqqsDDESGEHQSVNEIVEEQSVNEHVEEPT 498

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  284 RAgeedgkDTREEDGADASEEDPT--WAGEEEGADSG-EEDGADAS--EEDDTITNEKAHSILNFLKSTQEM-------- 350
Cdd:PTZ00341   499 VA------DIVEQETVDEHVEEPAvdENEEQQTADEHvEEPTIAEEhvEEEISTAEEHIEEPASDVQQDSEAaptieipd 572


                   ....*...
gi 2462617931  351 -YFYDAWG 357
Cdd:PTZ00341   573 tLFYDILG 580
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 192-337 8.41e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.29  E-value: 8.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  192 PEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDARE 271
Cdd:TIGR00927  686 PAERKGEQEGEGEIEAKEADHKGETE---AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRK 762

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462617931  272 EDGVDTIEEDLTRAGEEDGKDTREEDGADASEEdptwaGEEEGADSGEEDGADASEEDDTITNEKA 337
Cdd:TIGR00927  763 ETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE-----GAEGKVEHEGETEAGEKDEHEGQSETQA 823
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 204-312 9.04e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 42.08  E-value: 9.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  204 EACEEDGVDTSEEDPTLAGEEDVKDTRE--EDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGV---DTI 278
Cdd:PTZ00341  1020 EEYDEENVEEVEENVEEYDEENVEEIEEnaEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEeieENV 1099

                           90       100       110
                   ....*....|....*....|....*....|....
gi 2462617931  279 EEDLTRAGEEDGKDTREEDGADASEEDPTWAGEE 312
Cdd:PTZ00341  1100 EENVEENAEENAEENAEENAEEYDDENPEEHNEE 1133
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 231-337 1.70e-03

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 40.93  E-value: 1.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 231 EEDGADASEEdltrarqEEGADASEEDPTPAGEEDVKDAREEDGVDTIEEDLTRAGEEDgkDTREEDGADASEEDptwaG 310
Cdd:COG4547   208 AEELGEDEDE-------EDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDA--EEGESEAAEAESDE----M 274

                          90       100
                  ....*....|....*....|....*..
gi 2462617931 311 EEEGADSGEEDGADASEEDDTITNEKA 337
Cdd:COG4547   275 AEEAEGEDSEEPGEPWRPNAPPPDDPA 301
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 192-331 2.11e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 40.66  E-value: 2.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 192 PEDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDlTRARQEEGADASEedptpAGEEDVKDARE 271
Cdd:PRK12678   73 PAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAP-EAAQARERRERGE-----AARRGAARKAG 146

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 272 EDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDT 331
Cdd:PRK12678  147 EGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRR 206
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 193-303 2.18e-03

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 40.93  E-value: 2.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931  193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASE--EDLTRARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PTZ00341  1024 EENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEeiEENIEENIEENVEENVEENVEEIEENVEENV 1103

                           90       100       110
                   ....*....|....*....|....*....|...
gi 2462617931  271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASE 303
Cdd:PTZ00341  1104 EENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 195-335 2.83e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 39.96  E-value: 2.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 195 SSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGA--DASEEDLTRARQEE-GADASEEDptpagEEDVKDARE 271
Cdd:PRK13108  322 EPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAveETSEADIEREQPGDlAGQAPAAH-----QVDAEAASA 396

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462617931 272 EDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTwAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PRK13108  397 APEEPAALASEAHDETEPEVPEKAAPIPDPAKPDEL-AVAGPGDDPAEPDGIRRQDDFSSRRRR 459
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 132-345 2.91e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 39.98  E-value: 2.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 132 EQAELEKQQSLLQEKSQRQHTDGTTISKNKKRKLKKKQQIKRKKAAGLAAKAAGVSFMYQPEDSSNEGEGVGEACEEDGV 211
Cdd:PRK05901    9 ELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617931 212 DTSEEDPTLAGEEDVKDTREEDGADASEEDLTRARQEEGADA-SEEDPTPAGEEDVKDAREEDGVDTIEEDltragEEDG 290
Cdd:PRK05901   89 KAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQAdDDDDDDDDDDLDDDDIDDDDDDEDDDED-----DDDD 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2462617931 291 KDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNEKAHSILNFLK 345
Cdd:PRK05901  164 DVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADPVKAYLK 218
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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