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Conserved domains on  [gi|2462617925|ref|XP_054215804|]
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glutamate-rich protein 1 isoform X6 [Homo sapiens]

Protein Classification

ICP22 family protein( domain architecture ID 708738)

ICP22 family protein similar to Herpesvirus saimiri transcriptional regulator ICP22 homolog (also known as immediate-early protein) that regulates the transcription of alphaherpesviruses and their host genes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03169 super family cl27451
hypothetical protein; Provisional
 191-335 4.06e-06

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA03169:

Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 49.20  E-value: 4.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 191 QPEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEdltrARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PHA03169   47 APPAPTTSGPQVRAVAEQGHRQTESDT---ETAEESRHGEKEERGQGGPS----GSGSESVGSPTPSPSGSAEELASGLS 119

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462617925 271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PHA03169  120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
 
Name Accession Description Interval E-value
PHA03169 PHA03169
hypothetical protein; Provisional
 191-335 4.06e-06

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 49.20  E-value: 4.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 191 QPEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEdltrARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PHA03169   47 APPAPTTSGPQVRAVAEQGHRQTESDT---ETAEESRHGEKEERGQGGPS----GSGSESVGSPTPSPSGSAEELASGLS 119

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462617925 271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PHA03169  120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 132-330 6.37e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 45.76  E-value: 6.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  132 EQAELEKQQSLLQEKSQRQHTDGTTISKNKKRKLKKKQQIKRKKAAGLAAKAAGVSFMYQPEDSSNEGEGVGEAcEEDGV 211
Cdd:TIGR00927  661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIET-GEEGE 739

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  212 DTSEEDPTLA---GEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGVDTIEEDL------ 282
Cdd:TIGR00927  740 EVEDEGEGEAegkHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDehegqs 819

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462617925  283 -TRAGEEDGKDTREEDGADASEEDPTWAGEE--------EGADSGEEDGADASEEDD 330
Cdd:TIGR00927  820 eTQADDTEVKDETGEQELNAENQGEAKQDEKgvdggggsDGGDSEEEEEEEEEEEEE 876
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 251-331 2.65e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 43.63  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 251 ADASEEDPTPAGEEDVKDAREEDGvdtiEEDLTRAGEEDGKDTREEDGADASEEDPTwAGEEEGADSGEEDGADASEEDD 330
Cdd:COG4547   208 AEELGEDEDEEDEDDEDDSGEQEE----DEEDGEDEDEESDEGAEAEDAEASGDDAE-EGESEAAEAESDEMAEEAEGED 282


                  .
gi 2462617925 331 T 331
Cdd:COG4547   283 S 283
TFIIF_alpha pfam05793
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ...
 193-336 4.65e-03

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.


Pssm-ID: 310411 [Multi-domain]  Cd Length: 528  Bit Score: 39.55  E-value: 4.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDltRARQEEGADASEEDPTPAGEEDVKDAREE 272
Cdd:pfam05793 197 EETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKKKKKKK--KLAKNKKKLDDDKKKKRGGDDDAFEYDSD 274

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462617925 273 DGVD-TIEEDLTRAGEEDGKDTREEDGADASEEDPtwAGEEEGADSGEEDGADASEEDDTITNEK 336
Cdd:pfam05793 275 DGDDeGREEDYISDSSASGNDPEEREDKLSPEEPA--KGEIEQSDDSEESEEEKNEEEGKLSKKG 337
 
Name Accession Description Interval E-value
PHA03169 PHA03169
hypothetical protein; Provisional
 191-335 4.06e-06

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 49.20  E-value: 4.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 191 QPEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEdltrARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PHA03169   47 APPAPTTSGPQVRAVAEQGHRQTESDT---ETAEESRHGEKEERGQGGPS----GSGSESVGSPTPSPSGSAEELASGLS 119

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462617925 271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PHA03169  120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
PHA03169 PHA03169
hypothetical protein; Provisional
 192-365 1.71e-05

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 47.27  E-value: 1.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 192 PEDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDltraRQEEGADASEEDPTPAGEEDVKDARE 271
Cdd:PHA03169  105 PSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES----HNPSPNQQPSSFLQPSHEDSPEEPEP 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 272 EDGVDtiEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGeeDGADASEEDDTITNEKAHSIlNFLKSTQEMY 351
Cdd:PHA03169  181 PTSEP--EPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSP--NTQQAVEHEDEPTEPEREGP-PFPGHRSHSY 255

                         170
                  ....*....|....
gi 2462617925 352 FYDAWGRPTVMPGV 365
Cdd:PHA03169  256 TVVGWKPSTRPGGV 269
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 197-336 5.77e-05

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 45.93  E-value: 5.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  197 NEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGVD 276
Cdd:PTZ00341   930 NQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEE 1009

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462617925  277 TIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGE-EEGADSG-EEDGADASEEDDTITNEK 336
Cdd:PTZ00341  1010 NVEENIEENVEEYDEENVEEVEENVEEYDEENVEEiEENAEENvEENIEENIEEYDEENVEE 1071
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 132-330 6.37e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 45.76  E-value: 6.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  132 EQAELEKQQSLLQEKSQRQHTDGTTISKNKKRKLKKKQQIKRKKAAGLAAKAAGVSFMYQPEDSSNEGEGVGEAcEEDGV 211
Cdd:TIGR00927  661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIET-GEEGE 739

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  212 DTSEEDPTLA---GEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGVDTIEEDL------ 282
Cdd:TIGR00927  740 EVEDEGEGEAegkHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDehegqs 819

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462617925  283 -TRAGEEDGKDTREEDGADASEEDPTWAGEE--------EGADSGEEDGADASEEDD 330
Cdd:TIGR00927  820 eTQADDTEVKDETGEQELNAENQGEAKQDEKgvdggggsDGGDSEEEEEEEEEEEEE 876
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 209-357 2.52e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 44.01  E-value: 2.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  209 DGVDTSEEdptlageEDVKDTREEDGADASEEDLTRAR--QEEGADASEE---DPTPAGEEDVKDAREEDGVDTIEEDLT 283
Cdd:PTZ00341   426 DMLDGSED-------ESVEDNEEEHSGDANEEELSVDEhvEEHNADDSGEqqsDDESGEHQSVNEIVEEQSVNEHVEEPT 498

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  284 RAgeedgkDTREEDGADASEEDPT--WAGEEEGADSG-EEDGADAS--EEDDTITNEKAHSILNFLKSTQEM-------- 350
Cdd:PTZ00341   499 VA------DIVEQETVDEHVEEPAvdENEEQQTADEHvEEPTIAEEhvEEEISTAEEHIEEPASDVQQDSEAaptieipd 572


                   ....*...
gi 2462617925  351 -YFYDAWG 357
Cdd:PTZ00341   573 tLFYDILG 580
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 251-331 2.65e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 43.63  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 251 ADASEEDPTPAGEEDVKDAREEDGvdtiEEDLTRAGEEDGKDTREEDGADASEEDPTwAGEEEGADSGEEDGADASEEDD 330
Cdd:COG4547   208 AEELGEDEDEEDEDDEDDSGEQEE----DEEDGEDEDEESDEGAEAEDAEASGDDAE-EGESEAAEAESDEMAEEAEGED 282


                  .
gi 2462617925 331 T 331
Cdd:COG4547   283 S 283
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 207-316 3.68e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 43.24  E-value: 3.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 207 EEDGVDTSEEDPtlaGEEDVKDTREEDGADASEEDltrarQEEGADASEEDPTPAGEEDvkDAREEDGVDTIEEDLtrag 286
Cdd:COG4547   209 EELGEDEDEEDE---DDEDDSGEQEEDEEDGEDED-----EESDEGAEAEDAEASGDDA--EEGESEAAEAESDEM---- 274

                          90       100       110
                  ....*....|....*....|....*....|
gi 2462617925 287 EEDGKDTREEDGADASEEDPTWAGEEEGAD 316
Cdd:COG4547   275 AEEAEGEDSEEPGEPWRPNAPPPDDPADPD 304
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 193-335 4.02e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 43.45  E-value: 4.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVkDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREE 272
Cdd:TIGR00927  756 ETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDG-EMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGE 834

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462617925  273 DGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:TIGR00927  835 QELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 204-312 5.36e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 42.85  E-value: 5.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  204 EACEEDGVDTSEEDPTLAGEEDVKDTRE--EDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGV---DTI 278
Cdd:PTZ00341  1020 EEYDEENVEEVEENVEEYDEENVEEIEEnaEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEeieENV 1099

                           90       100       110
                   ....*....|....*....|....*....|....
gi 2462617925  279 EEDLTRAGEEDGKDTREEDGADASEEDPTWAGEE 312
Cdd:PTZ00341  1100 EENVEENAEENAEENAEENAEEYDDENPEEHNEE 1133
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 192-337 8.77e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.29  E-value: 8.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  192 PEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDARE 271
Cdd:TIGR00927  686 PAERKGEQEGEGEIEAKEADHKGETE---AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRK 762

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462617925  272 EDGVDTIEEDLTRAGEEDGKDTREEDGADASEEdptwaGEEEGADSGEEDGADASEEDDTITNEKA 337
Cdd:TIGR00927  763 ETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE-----GAEGKVEHEGETEAGEKDEHEGQSETQA 823
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 192-331 1.19e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 41.43  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 192 PEDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDlTRARQEEGADASEedptpAGEEDVKDARE 271
Cdd:PRK12678   73 PAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAP-EAAQARERRERGE-----AARRGAARKAG 146

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 272 EDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDT 331
Cdd:PRK12678  147 EGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRR 206
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 231-337 1.29e-03

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 41.32  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 231 EEDGADASEEdltrarqEEGADASEEDPTPAGEEDVKDAREEDGVDTIEEDLTRAGEEDgkDTREEDGADASEEDptwaG 310
Cdd:COG4547   208 AEELGEDEDE-------EDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDA--EEGESEAAEAESDE----M 274

                          90       100
                  ....*....|....*....|....*..
gi 2462617925 311 EEEGADSGEEDGADASEEDDTITNEKA 337
Cdd:COG4547   275 AEEAEGEDSEEPGEPWRPNAPPPDDPA 301
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 193-303 1.36e-03

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 41.70  E-value: 1.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925  193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASE--EDLTRARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PTZ00341  1024 EENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEeiEENIEENIEENVEENVEENVEEIEENVEENV 1103

                           90       100       110
                   ....*....|....*....|....*....|...
gi 2462617925  271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASE 303
Cdd:PTZ00341  1104 EENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 132-345 2.02e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 40.75  E-value: 2.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 132 EQAELEKQQSLLQEKSQRQHTDGTTISKNKKRKLKKKQQIKRKKAAGLAAKAAGVSFMYQPEDSSNEGEGVGEACEEDGV 211
Cdd:PRK05901    9 ELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 212 DTSEEDPTLAGEEDVKDTREEDGADASEEDLTRARQEEGADA-SEEDPTPAGEEDVKDAREEDGVDTIEEDltragEEDG 290
Cdd:PRK05901   89 KAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQAdDDDDDDDDDDLDDDDIDDDDDDEDDDED-----DDDD 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2462617925 291 KDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNEKAHSILNFLK 345
Cdd:PRK05901  164 DVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADPVKAYLK 218
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 195-335 3.19e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 39.96  E-value: 3.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 195 SSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGA--DASEEDLTRARQEE-GADASEEDptpagEEDVKDARE 271
Cdd:PRK13108  322 EPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAveETSEADIEREQPGDlAGQAPAAH-----QVDAEAASA 396

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462617925 272 EDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTwAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PRK13108  397 APEEPAALASEAHDETEPEVPEKAAPIPDPAKPDEL-AVAGPGDDPAEPDGIRRQDDFSSRRRR 459
TFIIF_alpha pfam05793
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ...
 193-336 4.65e-03

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.


Pssm-ID: 310411 [Multi-domain]  Cd Length: 528  Bit Score: 39.55  E-value: 4.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDltRARQEEGADASEEDPTPAGEEDVKDAREE 272
Cdd:pfam05793 197 EETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKKKKKKK--KLAKNKKKLDDDKKKKRGGDDDAFEYDSD 274

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462617925 273 DGVD-TIEEDLTRAGEEDGKDTREEDGADASEEDPtwAGEEEGADSGEEDGADASEEDDTITNEK 336
Cdd:pfam05793 275 DGDDeGREEDYISDSSASGNDPEEREDKLSPEEPA--KGEIEQSDDSEESEEEKNEEEGKLSKKG 337
COG5593 COG5593
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal ...
 185-339 8.39e-03

Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227880 [Multi-domain]  Cd Length: 821  Bit Score: 38.87  E-value: 8.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 185 GVSFMyQPEdSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTRE-------EDGADASEEDLTRARQEEGADASEED 257
Cdd:COG5593   612 GTSIM-QPL-FSGVNDSLVKASMHDQGPVNTEDWLTKKVEDIKPEDKffyqyftKKTADGKGKKSNKASFDSDDEMDENE 689

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462617925 258 PTPA---GEEDVKDAREEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADS------GEEDGAD---- 324
Cdd:COG5593   690 IWSAlvkSRPDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEifysfdGEQDNSDsfae 769

                         170       180
                  ....*....|....*....|.
gi 2462617925 325 ------ASEEDDTITNEKAHS 339
Cdd:COG5593   770 sseedeSSEEEKEEEENKEVS 790
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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