|
Name |
Accession |
Description |
Interval |
E-value |
| Auts2 |
pfam15336 |
Autism susceptibility gene 2 protein; Auts2, or FBRSL2, Fibrosin-1-like protein 2, is a family ... |
469-681 |
1.37e-82 |
|
Autism susceptibility gene 2 protein; Auts2, or FBRSL2, Fibrosin-1-like protein 2, is a family of eukaryotic proteins associated both with a susceptibility to autism and with influencing the number of corpora lutea produced by breeding sows.
Pssm-ID: 464656 Cd Length: 217 Bit Score: 267.48 E-value: 1.37e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 469 KPGKWCAMHVHIAWQIYHHQQKVKkQMQSDPHKLDFGLKPEFLSRPPGPSLFGAIHHPHDLARPSTLFSAAGAAHPTGTP 548
Cdd:pfam15336 1 KPGKWCAMHVRIAWQIYHHQQKVK-QMQLDPHKLDVGLKLELLSRPPGPGVFGGFPYPHDLARPATLFSATGAAHPSATP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 549 FGPPPHHSNFLNPAAHLEPFNRPSTFTGLAAVGGNAFGGLGNPSVTPNSMFGHKDGPSVQNFSNPHEPWNRLHRTPPSFP 628
Cdd:pfam15336 80 FGPSPPHGSFLSPASHLDPFSRPSTFGGLGALSSGAFGGLGSPSLTANSVFGHKEGPPLQGFSSPHDPWNRLHRTPPSFP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462613565 629 TPPPWLKPGELERSASAAAHDRDRDVDKRD----SSVSKDDKERESVEK-RHSSHPSP 681
Cdd:pfam15336 160 TPPPWPKPGDAERSSSLESHERERDRERERekrdSSVIKDEKDRDSLDKnRHSSRSSP 217
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
142-279 |
2.52e-09 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 61.59 E-value: 2.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 142 PQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPlstQPPQGPPEAQLQ-PAPQPQVQRPPRPQSPTQLLHQNLPPV 220
Cdd:pfam09770 219 AQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQ---HPGQGHPVTILQrPQSPQPDPAQPSIQPQAQQFHQQPPPV 295
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 221 QAHPSaQSLSQPlsaynsSSLSLNSLSSRSSTPAKTQPAPPHISHH-PSASPFPLSLPNH 279
Cdd:pfam09770 296 PVQPT-QILQNP------NRLSAARVGYPQNPQPGVQPAPAHQAHRqQGSFGRQAPIITH 348
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
140-325 |
1.83e-08 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 58.51 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 140 PCPQV-AQPIPQPQT----------EPQLRAPSPDPdlvqrteaPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQS 208
Cdd:pfam09770 175 PAPQPaAQPASLPAPsrkmmsleevEAAMRAQAKKP--------AQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQP 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 209 PTQLLHQNLPPVQAHPsAQSLSQPLSAynssslslnslSSRSSTPAKTQPAPPHISHHPSASPFPLSL---PNHSPLHSF 285
Cdd:pfam09770 247 QQQPQQPQQHPGQGHP-VTILQRPQSP-----------QPDPAQPSIQPQAQQFHQQPPPVPVQPTQIlqnPNRLSAARV 314
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2462613565 286 tPTLQPPAHSHHPNmfaPPTALPPPPPLTSGSLQVAGHPA 325
Cdd:pfam09770 315 -GYPQNPQPGVQPA---PAHQAHRQQGSFGRQAPIITHPQ 350
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
140-297 |
8.02e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.87 E-value: 8.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 140 PCPQVAQPIPQPQTEPQLRAPSPdpdlvqrteAPPQPPPLSTQPPQgpPEAQLQPAPQPQVQRPPRPQSPTQLLHQNLPP 219
Cdd:PHA03247 2882 PVRRLARPAVSRSTESFALPPDQ---------PERPPQPQAPPPPQ--PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 220 VQAHPSAQSLSQPLSAYNSSSLSLNSLSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSPLH--------SFTPTLQP 291
Cdd:PHA03247 2951 GAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHeetdpppvSLKQTLWP 3030
|
....*.
gi 2462613565 292 PAHSHH 297
Cdd:PHA03247 3031 PDDTED 3036
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
129-233 |
9.03e-08 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 56.63 E-value: 9.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 129 EPIFEPVVLKDPCP-----------QVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQgppeaqlQPAPQ 197
Cdd:PRK10263 742 EPLFTPIVEPVQQPqqpvapqqqyqQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQ-------PVAPQ 814
|
90 100 110
....*....|....*....|....*....|....*.
gi 2462613565 198 PQVQRPPRPQSPTQLLHQNLPPVQAHPSaQSLSQPL 233
Cdd:PRK10263 815 PQYQQPQQPVAPQPQYQQPQQPVAPQPQ-DTLLHPL 849
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
99-296 |
1.25e-07 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 55.93 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 99 PEHDSQDAGPIVPKISGLERSQEKSQDCCKEPIFE--PVVLKDPCPQVAQPIPQPQTEPQLRAPSPDPdlvQRTEAPPQP 176
Cdd:pfam03154 134 PKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQILQtqPPVLQAQSGAASPPSPPPPGTTQAATAGPTP---SAPSVPPQG 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 177 PPLSTQPPQGP-----PEAQLQPAPQPQVQRPPRPQSPTQLLHQNLPPVQAhpSAQSLSQPlsaynssslslNSLSSRSS 251
Cdd:pfam03154 211 SPATSQPPNQTqstaaPHTLIQQTPTLHPQRLPSPHPPLQPMTQPPPPSQV--SPQPLPQP-----------SLHGQMPP 277
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462613565 252 TPAKTQPAPPHISHHPSASPFPLSLPNHSPLHSFTPTLQPPAHSH 296
Cdd:pfam03154 278 MPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQ 322
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
140-332 |
3.85e-07 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 54.27 E-value: 3.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 140 PCPQVAQPIPQPQTEPQ--------LRAPSPDPDL----------VQRTEAPPQPPPLSTQPPQGPP-----------EA 190
Cdd:pfam09770 122 SLPQYQYASQQSQQPSKpvrtgyekYKEPEPIPDLqvdaslwgvaPKKAAAPAPAPQPAAQPASLPApsrkmmsleevEA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 191 QL-----QPAPQPQVQRPPRPQSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNSsslslnslssrsstPAKTQPAPPHISH 265
Cdd:pfam09770 202 AMraqakKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQ--------------QHPGQGHPVTILQ 267
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462613565 266 HPSASPFPLSLPNHSPLHSFTPTLQPPAHSH------HPNMFAPPTALPPPPPLTsGSLQVAGHPAGSTYSEQ 332
Cdd:pfam09770 268 RPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQptqilqNPNRLSAARVGYPQNPQP-GVQPAPAHQAHRQQGSF 339
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
145-261 |
7.60e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 53.33 E-value: 7.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 145 AQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLL--HQNLPPVQA 222
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQraQGATKAKKS 441
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462613565 223 HPSAQSLSQPLSAYNSSSLSLNSLSSRSSTPAKTQPAPP 261
Cdd:PRK07994 442 EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
129-298 |
7.82e-07 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 53.55 E-value: 7.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 129 EPIFEPVVLKDPCPQVAQPIPQPqTEPQLRAPSpdpdlVQRTEAPPQPPPLSTQPPQGP--PEAQLQPAPQ--PQVQRPP 204
Cdd:PRK10263 314 APITEPVAVAAAATTATQSWAAP-VEPVTQTPP-----VASVDVPPAQPTVAWQPVPGPqtGEPVIAPAPEgyPQQSQYA 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 205 RPQSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNSSSLSLNSLSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSPLHS 284
Cdd:PRK10263 388 QPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQT 467
|
170
....*....|....*
gi 2462613565 285 FT-PTLQPPAHSHHP 298
Cdd:PRK10263 468 YQqPAAQEPLYQQPQ 482
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
113-446 |
1.91e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.25 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 113 ISGLErsQEKSQDCCKEPIFEPVVLKDPCPQVAQPIPQPqtepqlrAPSPDPDLVQRTEAPPQPPPLSTQP-----PQGP 187
Cdd:PHA03247 2537 IRGLE--ELASDDAGDPPPPLPPAAPPAAPDRSVPPPRP-------APRPSEPAVTSRARRPDAPPQSARPrapvdDRGD 2607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 188 PEAQLQPAPQPQVQRPPRPQSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNSSSLSLNSLSSRSSTPAKTQpAPPHISHHP 267
Cdd:PHA03247 2608 PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAS-SPPQRPRRR 2686
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 268 SASPFPLSLPNHSPLHSFTPTLQPPAHSHHPNMFAPPTALPPPPPLTSGSLQVA--GHPAGSTYSEQDILRQELNTRFLA 345
Cdd:PHA03247 2687 AARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAppAVPAGPATPGGPARPARPPTTAGP 2766
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 346 SQSADRGASLGPPPYLRTEFHQHQHQHQHTHQHTHQHTFTPFPHAIPPTAIMPTPAPPMVRTPGrnfdkyPTKVDPfyrh 425
Cdd:PHA03247 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP------PTSAQP---- 2836
|
330 340
....*....|....*....|.
gi 2462613565 426 slfhSYPPAVSGIPPMIPPTG 446
Cdd:PHA03247 2837 ----TAPPPPPGPPPPSLPLG 2853
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
140-298 |
2.19e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.25 E-value: 2.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 140 PCPQVAQPIPQPQTEPQLRAPSPDPDLVQR---------TEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPT 210
Cdd:PHA03247 2836 PTAPPPPPGPPPPSLPLGGSVAPGGDVRRRppsrspaakPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPP 2915
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 211 QLLHQNLPPVQAHPSAQSLSQPLSaynSSSLSLNSLSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSPLHSFTPTLQ 290
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPPPPPRP---QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992
|
....*...
gi 2462613565 291 PPAHSHHP 298
Cdd:PHA03247 2993 TPPLTGHS 3000
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
142-276 |
1.49e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 48.94 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 142 PQVAQPIPQP-QTEPQLRAPSPDPDlvqrteAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLLHqnlPPV 220
Cdd:PRK14951 366 PAAAAEAAAPaEKKTPARPEAAAPA------AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAA---PAA 436
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462613565 221 QAHPSAQSLSQPLSAYNSSSLSLNSLSSR-SSTPAKTQPAPPHISHHPSASPFPLSL 276
Cdd:PRK14951 437 APAAAPAAVALAPAPPAQAAPETVAIPVRvAPEPAVASAAPAPAAAPAAARLTPTEE 493
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
99-277 |
3.19e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.40 E-value: 3.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 99 PEHDSQDAGPIVPKISGLERSQEKSQDCCKEPIFEPVVLKDPCPQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPP 178
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 179 LST----------------QPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNSSSLS 242
Cdd:PHA03247 2846 PPPslplggsvapggdvrrRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925
|
170 180 190
....*....|....*....|....*....|....*
gi 2462613565 243 LNSLSSRSSTPAKTQPAPPhishhPSASPFPLSLP 277
Cdd:PHA03247 2926 PPQPQPPPPPPPRPQPPLA-----PTTDPAGAGEP 2955
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
142-231 |
1.02e-04 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 46.57 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 142 PQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQllhqnLPPVQ 221
Cdd:pfam09770 272 PQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGR-----QAPII 346
|
90
....*....|
gi 2462613565 222 AHPsaQSLSQ 231
Cdd:pfam09770 347 THP--QQLAQ 354
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
140-236 |
1.57e-04 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 45.57 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 140 PCPQVAQPIPQPQTEPQLRAPSPDPDLVQRTEA-PPQPPPLSTQPPQGPPEAQlQPAPQPQVQRPPR-----PQSPTQLL 213
Cdd:TIGR01628 383 RQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGwPRMSMMPTPMGPGGPLRPN-GLAPMNAVRAPSRnaqnaAQKPPMQP 461
|
90 100
....*....|....*....|...
gi 2462613565 214 HQNLPPVQAHPSAQSLSQPLSAY 236
Cdd:TIGR01628 462 VMYPPNYQSLPLSQDLPQPQSTA 484
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
130-220 |
5.29e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 44.03 E-value: 5.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 130 PIFEPVVLKDPCPQVAQPIPQPQTEPQLRAPSPDPdlvqrtEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSP 209
Cdd:PRK14950 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIP------PKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIP 437
|
90
....*....|.
gi 2462613565 210 TQLLHQNLPPV 220
Cdd:PRK14950 438 VDEKPKYTPPA 448
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
663-826 |
5.46e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 663 KDDKERESVEKRHSSHPSPAPVLPVNALGHTRSSTEQIRAHLNTEAREKDKPKERERDHSESRKDLAADEHKAKEGHL-P 741
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKkA 1440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 742 EKDGHGHEGRAAGEEAKQLARVPSPYVRTPVVESARPNSTSSREAEPRKgEPAYENPKKSSEVKVKEERKEDHDLPPEAP 821
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK-KKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
....*
gi 2462613565 822 QTHRA 826
Cdd:PTZ00121 1520 EAKKA 1524
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
134-293 |
6.80e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 6.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 134 PVVLKDPCPQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLL 213
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE 2796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 214 HQNLPPVQAHPSAqslsqPLSAYNSSSLSLNSLSSRSSTPAKTQPAPPHISHHPSASPFPL--SLPNHSPLHSFTPTLQP 291
Cdd:PHA03247 2797 SLPSPWDPADPPA-----AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLggSVAPGGDVRRRPPSRSP 2871
|
..
gi 2462613565 292 PA 293
Cdd:PHA03247 2872 AA 2873
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
147-278 |
7.01e-04 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 43.56 E-value: 7.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 147 PIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLLHQNLPPVQAHPSA 226
Cdd:PHA03269 27 PIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAA 106
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2462613565 227 QSLSQPLSAYNSSSLSLNSLSSRSSTPAKTQPAPP-HISHHPSASPFPLSLPN 278
Cdd:PHA03269 107 APKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAaHTQHSPPPFAYTRSMEH 159
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
134-298 |
9.41e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.22 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 134 PVVLKDPCPQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQ-LQPAP--QPQVQRPPR---PQ 207
Cdd:pfam03154 286 PSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQpLPPAPlsMPHIKPPPTtpiPQ 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 208 SPTQLLHQ---------------NLPPVQAHPSAQSLS--QPLSAYNSSSLSLNSLSSRSSTPAKtqpaPPHISHHPSAS 270
Cdd:pfam03154 366 LPNPQSHKhpphlsgpspfqmnsNLPPPPALKPLSSLSthHPPSAHPPPLQLMPQSQQLPPPPAQ----PPVLTQSQSLP 441
|
170 180
....*....|....*....|....*...
gi 2462613565 271 PFPLSLPNHSPLHSFTPTLQPPAHSHHP 298
Cdd:pfam03154 442 PPAASHPPTSGLHQVPSQSPFPQHPFVP 469
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
104-206 |
1.07e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 43.15 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 104 QDAGPIVPKISGLERSQEKSQDCCKEPIFEPVVLKDPCPQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAP-PQP---PPL 179
Cdd:PRK10263 398 QQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTyQQPaaqEPL 477
|
90 100
....*....|....*....|....*..
gi 2462613565 180 STQPPQGPPEAQLQPAPQPQVQRPPRP 206
Cdd:PRK10263 478 YQQPQPVEQQPVVEPEPVVEETKPARP 504
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
142-211 |
1.08e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 1.08e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 142 PQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQ 211
Cdd:PRK07764 430 QPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAA 499
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
142-261 |
1.26e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 41.98 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 142 PQVAQPI------PQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQP-----PQGPPEAQLQPAPQPQVQRPPRPqspt 210
Cdd:PRK10819 42 PAPAQPIsvtmvaPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvvipkPEPKPKPKPKPKPKPVKKVEEQP---- 117
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462613565 211 qllHQNLPPVQAHPsaqslSQPLSAYNSSSLSLNSLSSRSSTPAKTQPAPP 261
Cdd:PRK10819 118 ---KREVKPVEPRP-----ASPFENTAPARPTSSTATAAASKPVTSVSSGP 160
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
142-225 |
1.35e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 42.84 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 142 PQVAQPIPQPQTEPQlRAPSPDPDLVQRTEAPPQPPPLSTQ---PPQGpPEAQLQPAPQPQVQRPPRPQSPTQLLHQNLP 218
Cdd:PRK14971 381 PVFTQPAAAPQPSAA-AAASPSPSQSSAAAQPSAPQSATQPagtPPTV-SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKI 458
|
....*..
gi 2462613565 219 PVQAHPS 225
Cdd:PRK14971 459 PVSKVSS 465
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
161-273 |
1.37e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 42.76 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 161 SPDPDLVQrtEAPPQPPPLSTQPPQGPPEAQLQPAPQPQV-QRPPRPQSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNSS 239
Cdd:PRK10263 730 SPMKALLD--DGPHEPLFTPIVEPVQQPQQPVAPQQQYQQpQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP 807
|
90 100 110
....*....|....*....|....*....|....
gi 2462613565 240 SLSLNSLSSRSSTPAKTQPAPPHISHHPSASPFP 273
Cdd:PRK10263 808 QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP 841
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
139-209 |
1.62e-03 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 41.14 E-value: 1.62e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462613565 139 DPCPQVAQPIP-QP----QTEPQLR---APSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSP 209
Cdd:PRK11633 54 DMMPAATQALPtQPpegaAEAVRAGdaaAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPK 132
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
129-301 |
1.97e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.17 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 129 EPIFEPVVLKDPCPQVAQPIPQPQTEPQLRAP---SPDPDLVQ-----------RTEAPPQPPPLSTQPPQGPPEAQLQP 194
Cdd:PRK12323 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAParrSPAPEALAaarqasargpgGAPAPAPAPAAAPAAAARPAAAGPRP 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 195 APQPQVQRPPRPQSPTQLLHQ--NLPPVQAHPSAQSLSQPlsaYNSSSLSLNSLSSRSSTPAKTQPAPPHISHHPSASPF 272
Cdd:PRK12323 472 VAAAAAAAPARAAPAAAPAPAddDPPPWEELPPEFASPAP---AQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAA 548
|
170 180
....*....|....*....|....*....
gi 2462613565 273 PLSLPNHSPLHSFTPTLQPPAHSHHPNMF 301
Cdd:PRK12323 549 PAPRAAAATEPVVAPRPPRASASGLPDMF 577
|
|
| PRK12757 |
PRK12757 |
cell division protein FtsN; Provisional |
144-211 |
2.01e-03 |
|
cell division protein FtsN; Provisional
Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 41.18 E-value: 2.01e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462613565 144 VAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGP-PEAQLQPAPQPQVQRPPRPQSPTQ 211
Cdd:PRK12757 112 PQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPaPVRTQPAAPVTQAVEAPKVEAEKE 180
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
140-227 |
2.17e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 140 PCPQVAQPIPQPQTePQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQlQPAPQPQVQRPPRPQSPTQLLHQNLPP 219
Cdd:PRK07764 406 PAAAPAPAAAAPAA-AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP-PPAAAPSAQPAPAPAAAPEPTAAPAPA 483
|
....*...
gi 2462613565 220 VQAHPSAQ 227
Cdd:PRK07764 484 PPAAPAPA 491
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
131-261 |
2.17e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.10 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 131 IFEPVVLKDPCPQVAQPipqpqtepqlRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPqvqrPPRPQSPt 210
Cdd:PRK14950 355 VIEALLVPVPAPQPAKP----------TAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPV----PPRPVAP- 419
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462613565 211 qllhqnlPPVQAHPSAQSLSqplsaynssslslNSLSSRSSTPAKTQPAPP 261
Cdd:PRK14950 420 -------PVPHTPESAPKLT-------------RAAIPVDEKPKYTPPAPP 450
|
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
140-232 |
5.36e-03 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 40.23 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 140 PCPQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAP-PQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLLHQNLP 218
Cdd:PHA02682 103 PAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPaPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCP 182
|
90
....*....|....
gi 2462613565 219 PVQAHPSAQSLSQP 232
Cdd:PHA02682 183 TIETAPAASPVLEP 196
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
130-234 |
5.39e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 40.86 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 130 PIFEPVVLKDPCPQVAQPIPQPQTEPQLR-----APSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPP 204
Cdd:PRK14949 681 LATHQSVPEAALASGSAPAPPPVPDPYDRppweeAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQA 760
|
90 100 110
....*....|....*....|....*....|....
gi 2462613565 205 RPQSPTQ---LLHQNLPPVQAHPS-AQSLSQPLS 234
Cdd:PRK14949 761 EAQSPASttaLTQTSSEVQDTELNlVLLSSGSIT 794
|
|
| PRK01297 |
PRK01297 |
ATP-dependent RNA helicase RhlB; Provisional |
150-212 |
5.84e-03 |
|
ATP-dependent RNA helicase RhlB; Provisional
Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 40.67 E-value: 5.84e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462613565 150 QPQTEPQLRAPSPDPdlvqRTEAPPQPPPLSTQPPQGPPEAQLQPAP-QPQVQRPPRPQSPTQL 212
Cdd:PRK01297 16 QPAPAPPSPAAAPAP----PPPAKTAAPATKAAAPAAAAPRAEKPKKdKPRRERKPKPASLWKL 75
|
|
| DUF6264 |
pfam19779 |
Family of unknown function (DUF6264); This family of putative integral membrane proteins is ... |
153-206 |
5.92e-03 |
|
Family of unknown function (DUF6264); This family of putative integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 179 and 218 amino acids in length.
Pssm-ID: 466182 Cd Length: 182 Bit Score: 39.17 E-value: 5.92e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462613565 153 TEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGP-------PEAQLQPAPQPQVQRPPRP 206
Cdd:pfam19779 9 PPGWQRAPIGDPAAAAAAAPPAAPAPAAPAPPAAPaappaapPPPGAPAPGAPAAARRARR 69
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
140-232 |
6.34e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 40.53 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 140 PCPQVAQPIPQPQ-TEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQspTQLLHQNLP 218
Cdd:PRK14971 409 AQPSAPQSATQPAgTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEK--AEQATGNIK 486
|
90
....*....|....
gi 2462613565 219 PVQAHPSAQSLSQP 232
Cdd:PRK14971 487 EAPTGTQKEIFTEE 500
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
128-232 |
7.14e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 39.28 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 128 KEPIFEPVVLKDPCPQVAQPIPQPQTEPQLRaPSPDPDLVQRTEAPPQPP--PLSTQPPQ-GPPEAQLQPAPQPQVQRPP 204
Cdd:PRK10819 72 VEPEPEPEPIPEPPKEAPVVIPKPEPKPKPK-PKPKPKPVKKVEEQPKREvkPVEPRPASpFENTAPARPTSSTATAAAS 150
|
90 100
....*....|....*....|....*...
gi 2462613565 205 RPQSptqllhqnlpPVQAHPSAQSLSQP 232
Cdd:PRK10819 151 KPVT----------SVSSGPRALSRNQP 168
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
147-234 |
7.83e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 40.44 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 147 PIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLLHQNLPPVQAHPSA 226
Cdd:PHA03378 743 RARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTK 822
|
....*...
gi 2462613565 227 QSLSQPLS 234
Cdd:PHA03378 823 QILRQLLT 830
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
145-235 |
8.58e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.35 E-value: 8.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 145 AQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPtqllhqnlPPVQAHP 224
Cdd:PRK07764 429 PQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA--------PAAPAAP 500
|
90
....*....|.
gi 2462613565 225 SAQSLSQPLSA 235
Cdd:PRK07764 501 AAPAGADDAAT 511
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
168-288 |
9.76e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 40.14 E-value: 9.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462613565 168 QRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPR---------PQSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNS 238
Cdd:pfam03154 422 QQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQspfpqhpfvPGGPPPITPPSGPPTSTSSAMPGIQPPSSASVS 501
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2462613565 239 SSLSLNSLSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSPLHSFTPT 288
Cdd:pfam03154 502 SSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPTVVNTPS 551
|
|
|