|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
264-947 |
2.42e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 2.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 264 ALRDSIQSAQELLAQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKAQ 343
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 344 VLNDQLTKKCSELSCMLQTVTMEKARIIADHQAI------LQVEQKMMTQTFQEQNLLLD---AAHASITNELQTVQNEK 414
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLeaeleeLEAELEELESRLEELEEQLEtlrSKVAQLELQIASLNNEI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 415 TQLQAHLDHLilEHNQCIQKAQdaekRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIV---QE 491
Cdd:TIGR02168 403 ERLEARLERL--EDRRERLQQE----IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEeaeQA 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 492 RCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASlelQQVTSDYHGLAQQKVEkiTESKNKLAYEN---GKLQ-IK 567
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN---QSGLSGILGVLSELIS--VDEGYEAAIEAalgGRLQaVV 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 568 VKQLEEQVQSFtDTSLQNDHLRKM--------NKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVED 639
Cdd:TIGR02168 552 VENLNAAKKAI-AFLKQNELGRVTflpldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 640 RENKkvgnfQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRdSEIAGLKKERDLNQQRVQKLEAEVD--- 716
Cdd:TIGR02168 631 LDNA-----LELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAelr 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 717 QWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEES 796
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 797 -KVEAELHA---------ERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKDQYQKKNYEQSL-----SIQRF 861
Cdd:TIGR02168 785 eELEAQIEQlkeelkalrEALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIeslaaEIEEL 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 862 VCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITAN 941
Cdd:TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
....*.
gi 2462572041 942 LEEAHR 947
Cdd:TIGR02168 945 LSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-813 |
2.77e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 2.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 199 EEELKTTKRKM---NLKIQELRRQLAQ--------EKY--LRESL-EKSASAMLLKIQEmgstveverkqvhiLQQNCIA 264
Cdd:COG1196 178 ERKLEATEENLerlEDILGELERQLEPlerqaekaERYreLKEELkELEAELLLLKLRE--------------LEAELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 265 LRDSIQSAQELLAQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKAQV 344
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 345 LNDQLTKKCSELScmlqtvtmEKARIIADHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHL 424
Cdd:COG1196 324 ELAELEEELEELE--------EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 425 ILEHNQcIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKnkv 504
Cdd:COG1196 396 AELAAQ-LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE--- 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 505 dinTLTHNLQTLEEENKHLADQMASLELQQVTSDYHGLAQQKVEKITESKNKLAYENGKLQIKV-KQLEEQVQSFTDTSL 583
Cdd:COG1196 472 ---AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVeAAYEAALEAALAAAL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 584 QNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVE-DRENKKVGNFQRQLAEAKEDNCKV 662
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvASDLREADARYYVLGDTLLGRTLV 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 663 TIMLENVLASHSKMQGALEKVQIE---LGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKA 739
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEgegGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462572041 740 LGVAREDNRKLAMSLEQALQTNnhLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEaelhaERIEALRKQ 813
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQL--EAEREELLEELLEEEELLEEEALEELPEPPDLEELE-----RELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-840 |
8.79e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 8.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 136 KDRLNAIQEEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQD-------EVQRLTATLKIASQTKKNAAIIEEELKTTKRK 208
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKelyalanEISRLEQQKQILRERLANLERQLEELEAQLEE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 209 MNLKIQELRRQLAQEKYLRESLEKSASAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQELLAQEQKKKEELEI 288
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 289 ATSQLKSdltSRDDLISKLVEENKNLQISFNKEHEENayLRSEIMSLHEASEKAQVLNDQLTKKCSELSCMLQTVTMEKA 368
Cdd:TIGR02168 408 RLERLED---RRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 369 RIiADHQAILQVEQKMMT--QTFQE------QNLLLDAAHASITNELQTVQNE-----KTQLQAHLDHLILEHNQCIQKA 435
Cdd:TIGR02168 483 EL-AQLQARLDSLERLQEnlEGFSEgvkallKNQSGLSGILGVLSELISVDEGyeaaiEAALGGRLQAVVVENLNAAKKA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 436 QDAEKrtavQKELLESTIARLRGELEASMQEKkslleekerfQREVNKTEKEIVQERCNLEKELAKNKVDINTL------ 509
Cdd:TIGR02168 562 IAFLK----QNELGRVTFLPLDSIKGTEIQGN----------DREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlv 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 510 THNLQTLEEENKHLADQMA--SLELQQVTSDY----------HGLAQQKVE--KITESKNKLAYENGKLQIKVKQLEEQV 575
Cdd:TIGR02168 628 VDDLDNALELAKKLRPGYRivTLDGDLVRPGGvitggsaktnSSILERRREieELEEKIEELEEKIAELEKALAELRKEL 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 576 QSFTDtslQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEA 655
Cdd:TIGR02168 708 EELEE---ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 656 KEDNCKVTIMLENVLAS---HSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNS- 731
Cdd:TIGR02168 785 EELEAQIEQLKEELKALreaLDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEl 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 732 ----------------EIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELE----RQNLETFKDR 791
Cdd:TIGR02168 865 eelieeleseleallnERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRleglEVRIDNLQER 944
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 2462572041 792 MTEESKVEAELHAERIEalrkqfqtERETTKKVAQREVAeQIEKELKQM 840
Cdd:TIGR02168 945 LSEEYSLTLEEAEALEN--------KIEDDEEEARRRLK-RLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
408-947 |
1.13e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 408 QTVQNEKTQLQAHLdhLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRgELEASMQEKKSLLEEKERFQREVNKTEKE 487
Cdd:COG1196 216 RELKEELKELEAEL--LLLKLRELEAELEELEAELEELEAELEELEAELA-ELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 488 IVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMAslELQQVTSDYHGLAQQKVEKITESKNKLAYENGKLQIK 567
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE--ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 568 VKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRtvkcRNAALKESQKLKEDLEAVEDRENKKVGN 647
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER----LEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 648 FQRQLAEAKEDnckvtimLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVmeD 727
Cdd:COG1196 447 AAEEEAELEEE-------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL--A 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 728 QHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTK-LDHIQEQLESKELERQNLETfKDRMTEESKVEAELHAER 806
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvAAAAIEYLKAAKAGRATFLP-LDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 807 IEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRN 886
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462572041 887 KQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHR 947
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
328-934 |
4.10e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 328 LRSEIMSLHEASEKAQVLNDqLTKKCSELSCMLQTVTMEKARiiaDHQAILQVEQKMMTQTFQEQNLLLDAAHASItNEL 407
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKE-LKAELRELELALLVLRLEELR---EELEELQEELKEAEEELEELTAELQELEEKL-EEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 408 QTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKE 487
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 488 IVQercnLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQvtsdyhGLAQQKVEKITESKNKLAYENGKLQIK 567
Cdd:TIGR02168 353 LES----LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI------ASLNNEIERLEARLERLEDRRERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 568 VKQLEEQVQS--FTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKV 645
Cdd:TIGR02168 423 IEELLKKLEEaeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 646 GNFQ--RQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVqieLGRR------------DSEIAGLKKER---------- 701
Cdd:TIGR02168 503 GFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRlqavvvenlnaaKKAIAFLKQNElgrvtflpld 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 702 DLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGvAREDNRKLAMSLEQALqtnnHLQTKLDHIQE--QLESKE 779
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALS-YLLGGVLVVDDLDNAL----ELAKKLRPGYRivTLDGDL 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 780 LERQNLETFKDRMTEESKVEAELHAERIEALRKQFQ-TERETTKKVAQ-REVAEQIEKELKQMELIKDQYQKKNYEQSLS 857
Cdd:TIGR02168 655 VRPGGVITGGSAKTNSSILERRREIEELEEKIEELEeKIAELEKALAElRKELEELEEELEQLRKELEELSRQISALRKD 734
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462572041 858 IQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVE 934
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
598-919 |
3.78e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 3.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 598 KYAQVKSILERSKEELSRtvkcrnAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDnckvtimLENVLASHSKMQ 677
Cdd:COG1196 214 RYRELKEELKELEAELLL------LKLRELEAELEELEAELEELEAELEELEAELAELEAE-------LEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 678 GALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQ---HNSEIESLQKALGVAREDNRKLAMSL 754
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEleeLEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 755 EQALQTNNHLQTKLDHIQEQLESKELERQNLETfkdrmTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIE 834
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALR-----AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 835 KELKQMELIKDQYQKKNYEQSLSIQrfvceMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETV 914
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEA-----LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
....*
gi 2462572041 915 RHLKK 919
Cdd:COG1196 511 KAALL 515
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-911 |
1.15e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 335 LHEASEKAQVLNDQLTKKCSELSCMLQTVTMEKARIIADHQAILQVEQKMmtQTFQEQNLLLDAAHASITNELQTVQNEK 414
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL--EEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 415 TQLQAHLDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRgELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCN 494
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE-EAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 495 LEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTsdyhgLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQ 574
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE-----LEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 575 VQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAE 654
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 655 AkednckvtIMLENVLASHSKMQGALEKVQIELGRRDSEIAgLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIE 734
Cdd:COG1196 546 A--------ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP-LDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 735 SLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQnleTFKDRMTEESKVEAELHAERIEALRKQF 814
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG---SRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 815 QTERETTKKVAQREVAEQIEKELKQMELIKDQYQKKNYEqslsiqrfvcEMTNLQKEMQMLAKSQYDASVRNKQQELHLE 894
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA----------EREELLEELLEEEELLEEEALEELPEPPDLE 763
|
570
....*....|....*..
gi 2462572041 895 AERKIRQELENRCQELE 911
Cdd:COG1196 764 ELERELERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
136-661 |
1.24e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 136 KDRLNAIQEEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKMNLKIQE 215
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 216 LRRQLAQEKYLRESLEKSASAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQELLAQEQKKKEELEIATSQLKS 295
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 296 DLTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKAQVLNDQLTKKCSELSCMLQTVTMEKARIIADHQ 375
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 376 AILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEhnQCIQKAQDAEKRTAVQKELLESTIAR 455
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA--ALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 456 LRGELEASMQEKKSLLEEKERFQREvnktEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQV 535
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAI----GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 536 TSDYHGLAQQKVEKITESKNKLAyENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSR 615
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELL-AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 2462572041 616 TVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCK 661
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
199-940 |
2.30e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 2.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 199 EEELKTTKRKMNLKIQELRRQLAQEKYLRES----LEKSASAMLLKIQEMgstvEVERKQVHILQqncialRDSIQSAQE 274
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKqkfyLRQSVIDLQTKLQEM----QMERDAMADIR------RRESQSQED 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 275 LLAQEQKKKEELEIATSqLKSDLTSRDdliSKLVEENKNLQISFNKEHEEnayLRSEIMSLHEASEKAQVLNDQLT---- 350
Cdd:pfam15921 143 LRNQLQNTVHELEAAKC-LKEDMLEDS---NTQIEQLRKMMLSHEGVLQE---IRSILVDFEEASGKKIYEHDSMStmhf 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 351 -KKCSELSCMLQTVTME----KARI--IADHQAILQVEQK----MMTQTFQEQNLLLDAAH----ASITNELQTVQNEKT 415
Cdd:pfam15921 216 rSLGSAISKILRELDTEisylKGRIfpVEDQLEALKSESQnkieLLLQQHQDRIEQLISEHeveiTGLTEKASSARSQAN 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 416 QLQAHLDhlILEhnqciQKAQDAEKRTAVQKELLESTIARLRGELeasmqekkslleekerfqREVNKTEKEIVQErcnL 495
Cdd:pfam15921 296 SIQSQLE--IIQ-----EQARNQNSMYMRQLSDLESTVSQLRSEL------------------REAKRMYEDKIEE---L 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 496 EKELAKNKVDINTLTHNLQTLEEENKHLADQmasleLQQVTSDYHglAQQKVEKITESKNKLAYENGklqikvkqleeqv 575
Cdd:pfam15921 348 EKQLVLANSELTEARTERDQFSQESGNLDDQ-----LQKLLADLH--KREKELSLEKEQNKRLWDRD------------- 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 576 qsfTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALkesQKLKEDLEavedrenkKVGNFQRQLAEA 655
Cdd:pfam15921 408 ---TGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAI---QGKNESLE--------KVSSLTAQLEST 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 656 KEDNCKVT-------IMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQaRMLVMEDQ 728
Cdd:pfam15921 474 KEMLRKVVeeltakkMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR-NVQTECEA 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 729 HNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRmtEESKVEaELHAeRIE 808
Cdd:pfam15921 553 LKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDK--KDAKIR-ELEA-RVS 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 809 ALrkqfqtERETTKKVAQREVAEQIEKELKQMeliKDQYQKKnyeqslsIQRFVCEMTNLQKEMQMLAKsqydaSVRNKQ 888
Cdd:pfam15921 629 DL------ELEKVKLVNAGSERLRAVKDIKQE---RDQLLNE-------VKTSRNELNSLSEDYEVLKR-----NFRNKS 687
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 2462572041 889 QELHLEAErKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITA 940
Cdd:pfam15921 688 EEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
588-879 |
2.75e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 588 LRKMNKYLQTKYAQVKSiLERSKEELSRTVKCRNaalKESQKLKEDLEAVEDRENKKVGNFQRQLaeaKEDNCKVTIMLE 667
Cdd:TIGR02169 232 KEALERQKEAIERQLAS-LEEELEKLTEEISELE---KRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIA 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 668 NVLASHS-------KMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEdqhnSEIESLQKAL 740
Cdd:TIGR02169 305 SLERSIAekereleDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR----AELEEVDKEF 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 741 GVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLEtfkdrmteeskveaelhaERIEALRKQfQTERET 820
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLN------------------AAIAGIEAK-INELEE 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462572041 821 TKKVAQREVAEQiEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQ 879
Cdd:TIGR02169 442 EKEDKALEIKKQ-EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
686-984 |
5.13e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 5.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 686 ELGRRdseIAGLKKERDlNQQRVQKLEAEVDQWQARMLVMEDQHnseiesLQKALGVAREDNRKLAMSLEQALQTNNHLQ 765
Cdd:COG1196 197 ELERQ---LEPLERQAE-KAERYRELKEELKELEAELLLLKLRE------LEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 766 TKLDHIQEQLESKELERQNLEtfKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKD 845
Cdd:COG1196 267 AELEELRLELEELELELEEAQ--AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 846 QYQKKNYEQSLSIQrfvcEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATE 925
Cdd:COG1196 345 ELEEAEEELEEAEA----ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 926 NTLKEASVESEQITANLEEAHRWFKHRFDG-LQLELTKNRLQRPSGEDRWQEKDQDVKHD 984
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEeAELEEEEEALLELLAELLEEAALLEAALA 480
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
460-788 |
1.29e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 460 LEASMQEKKSLLEE--------------------------------------KERFQREVNKTEK--EIVQERCNLEKEL 499
Cdd:TIGR02168 150 IEAKPEERRAIFEEaagiskykerrketerklertrenldrledilnelerqLKSLERQAEKAERykELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 500 AKNkvDINTLTHNLQTLEEENKHLADQMASLELQQVTSD----YHGLAQQKVEkitESKNKLAYENGKLQIKVKQLEEQV 575
Cdd:TIGR02168 230 LVL--RLEELREELEELQEELKEAEEELEELTAELQELEekleELRLEVSELE---EEIEELQKELYALANEISRLEQQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 576 QsFTDTSLQNdhLRKMNKYLQTKYAQVKSILERSKEELSRtvkcRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEA 655
Cdd:TIGR02168 305 Q-ILRERLAN--LERQLEELEAQLEELESKLDELAEELAE----LEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 656 KEDnckvtimLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVME-DQHNSEIE 734
Cdd:TIGR02168 378 EEQ-------LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELE 450
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2462572041 735 SLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETF 788
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
144-914 |
1.88e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 144 EEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQdEVQRLTATLKIASQTKKNAAIieEELKTTKRKMNLKIQELRRQLAQE 223
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEGYELLKEK--EALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 224 KYLRESLEKSASAML-------LKIQEMGSTVEVE-RKQVHILQQNCIALRDSIQSAQELLAQEQKKKEELEIATSQLKS 295
Cdd:TIGR02169 257 TEEISELEKRLEEIEqlleelnKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 296 DLTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKAQVLNDQLTKKCSELSCMLQTVTMEKARIiadhq 375
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL----- 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 376 ailqveqkmmtqtfQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEhnqcIQKAQDAEKRTAVQKELLESTIAR 455
Cdd:TIGR02169 412 --------------QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE----IKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 456 LRGELEASMQEKKSLLEEKERFQREVNKTEKEiVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQV 535
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASEER-VRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 536 TSDYHGLAQQKVEKITESK---------NKLA---------YENGKLQIKV------KQLEEQV-QSFTDTSLQND---H 587
Cdd:TIGR02169 553 VVEDDAVAKEAIELLKRRKagratflplNKMRderrdlsilSEDGVIGFAVdlvefdPKYEPAFkYVFGDTLVVEDieaA 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 588 LRKMNKY-------------------------LQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDR-- 640
Cdd:TIGR02169 633 RRLMGKYrmvtlegelfeksgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEls 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 641 -ENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAglKKERDLNQQR--VQKLEAEVDQ 717
Cdd:TIGR02169 713 dASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE--ELEEDLHKLEeaLNDLEARLSH 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 718 WQARMLVME-DQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEES 796
Cdd:TIGR02169 791 SRIPEIQAElSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 797 KvEAELHAERIEALRKQFQTERETTK------KVAQREVAEQIEKELKQMELIKDQYQKKNYEQS--------------- 855
Cdd:TIGR02169 871 E-ELEAALRDLESRLGDLKKERDELEaqlrelERKIEELEAQIEKKRKRLSELKAKLEALEEELSeiedpkgedeeipee 949
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 856 -LSIQRFVCEMTNLQKEMQ------MLAKSQYDASVRN----KQQELHLEAERKIRQELENRCQELEETV 914
Cdd:TIGR02169 950 eLSLEDVQAELQRVEEEIRalepvnMLAIQEYEEVLKRldelKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
686-945 |
2.21e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 686 ELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEdqhnSEIESLQKALGVAREDNRKLAMSLEQalqtnnhLQ 765
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS----RKIGEIEKEIEQLEQEEEKLKERLEE-------LE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 766 TKLDHIQEQLESKELERQNLETFKDRMTEE--------SKVEAELHAERIEALRKQFQTERETTKKvaQREVAEQIEKEL 837
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDlhkleealNDLEARLSHSRIPEIQAELSKLEEEVSR--IEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 838 KQMELIKDQYQKknyeqslsiqrfvcEMTNLQKEMQMLaKSQyDASVRNKQQELHLEAERKIRQ--ELENRCQELEETVR 915
Cdd:TIGR02169 822 NRLTLEKEYLEK--------------EIQELQEQRIDL-KEQ-IKSIEKEIENLNGKKEELEEEleELEAALRDLESRLG 885
|
250 260 270
....*....|....*....|....*....|
gi 2462572041 916 HLKKCKEATENTLKEASVESEQITANLEEA 945
Cdd:TIGR02169 886 DLKKERDELEAQLRELERKIEELEAQIEKK 915
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
421-838 |
4.32e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 4.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 421 LDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNktekEIVQERCNLEKELA 500
Cdd:TIGR02169 644 LEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD----ELSQELSDASRKIG 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 501 KNKVDINTLTHNLQTLEEENKHLADQMASLElqqvtsdyhglaqQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTD 580
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLE-------------QEIENVKSELKELEARIEELEEDLHKLEEALNDLEA 786
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 581 tslqndhlrkmnKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDrenkKVGNFQRQLAEAKEDNC 660
Cdd:TIGR02169 787 ------------RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK----EIQELQEQRIDLKEQIK 850
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 661 KVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERD-------LNQQRVQKLEAEVDQWQARMLVMEDQ---HN 730
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDeleaqlrELERKIEELEAQIEKKRKRLSELKAKleaLE 930
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 731 SEIESLQKALGVAREDNRKLaMSLEQalqtnnhLQTKLDHIQEQLESKE----LERQNLETFKDRMTEESKVEAELHAER 806
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEE-LSLED-------VQAELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEER 1002
|
410 420 430
....*....|....*....|....*....|..
gi 2462572041 807 IEALRKQFQTEREttKKVAQREVAEQIEKELK 838
Cdd:TIGR02169 1003 KAILERIEEYEKK--KREVFMEAFEAINENFN 1032
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
135-853 |
7.77e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 7.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 135 LKDRLNAIQEEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKM----N 210
Cdd:pfam15921 90 LQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMledsN 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 211 LKIQELRR-QLAQEKYLRE-------------------------SLEKSASAMLLKIQEMGSTVEVERKQVHILQQNCIA 264
Cdd:pfam15921 170 TQIEQLRKmMLSHEGVLQEirsilvdfeeasgkkiyehdsmstmHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEA 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 265 LRDSIQSAQELLAQEQKKK-------EELEIA-----TSQLKSDLTSRDDLISKLVEENKNLQISFNKEHEE----NAYL 328
Cdd:pfam15921 250 LKSESQNKIELLLQQHQDRieqliseHEVEITgltekASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDlestVSQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 329 RSEIMSLHEASE-KAQVLNDQLTKKCSELS---CMLQTVTMEKARIIADHQAIL----QVEQKMMTQTFQEQNLLLDAAH 400
Cdd:pfam15921 330 RSELREAKRMYEdKIEELEKQLVLANSELTearTERDQFSQESGNLDDQLQKLLadlhKREKELSLEKEQNKRLWDRDTG 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 401 ASIT-----NELQTVQNEKTQLQAHLDHLILE-------HNQCIQKAQDAEKRTAVQKELLESTIARLRGELEaSMQEKK 468
Cdd:pfam15921 410 NSITidhlrRELDDRNMEVQRLEALLKAMKSEcqgqmerQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVE-ELTAKK 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 469 SLLEEKERFQREVNKT--EKEIVQERCNLEKELAKNKVDINtlTHNLQTLEEENKHLADQMA---SLELQQVTSD-YHGL 542
Cdd:pfam15921 489 MTLESSERTVSDLTASlqEKERAIEATNAEITKLRSRVDLK--LQELQHLKNEGDHLRNVQTeceALKLQMAEKDkVIEI 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 543 AQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQsftDTSLQndhLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNA 622
Cdd:pfam15921 567 LRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIN---DRRLE---LQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA 640
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 623 ALKESQKLKeDLEAVEDRENKKVGNFQRQLAEAKEDnckVTIMLENVLASHSKMQGALEKVQIELGRRDSEIaglkkerd 702
Cdd:pfam15921 641 GSERLRAVK-DIKQERDQLLNEVKTSRNELNSLSED---YEVLKRNFRNKSEEMETTTNKLKMQLKSAQSEL-------- 708
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 703 lnqqrvqkleaevdqwqarmlvmeDQHNSEIESLQKALGVArednRKLAMSLEQALQTN----NHLQTKLDHIQEQLESK 778
Cdd:pfam15921 709 ------------------------EQTRNTLKSMEGSDGHA----MKVAMGMQKQITAKrgqiDALQSKIQFLEEAMTNA 760
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462572041 779 ELERQNLETFKDRMTEE-SKVEAELH--AERIEALRKQfqtERETTKKVAQREVAeqIEKELKQMELIKDQYQKKNYE 853
Cdd:pfam15921 761 NKEKHFLKEEKNKLSQElSTVATEKNkmAGELEVLRSQ---ERRLKEKVANMEVA--LDKASLQFAECQDIIQRQEQE 833
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
691-937 |
8.00e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 8.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 691 DSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKAlgvAREDNRKLAMSLEQALQTNNHLQTKLDH 770
Cdd:pfam17380 338 EQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQME---RQQKNERVRQELEAARKVKILEEERQRK 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 771 IQEQLESKELERQNLETFKDRMTE--ESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKDQyQ 848
Cdd:pfam17380 415 IQQQKVEMEQIRAEQEEARQREVRrlEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQ-R 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 849 KKNYEQSLSIQRFvcEMTNLQKEMQMLAKSQYDasvrnKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTL 928
Cdd:pfam17380 494 RKILEKELEERKQ--AMIEEERKRKLLEKEMEE-----RQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERS 566
|
....*....
gi 2462572041 929 KEASVESEQ 937
Cdd:pfam17380 567 RLEAMERER 575
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
273-944 |
8.43e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 8.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 273 QELLAQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKAQVLNDQLTKk 352
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRAR- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 353 CSELSCMLQTVTM---------EKARIIADHQAILQVEQKMMT--QTFQEQNLLLdaahASITNELQTVQNEKTQLQAHL 421
Cdd:TIGR00618 269 IEELRAQEAVLEEtqerinrarKAAPLAAHIKAVTQIEQQAQRihTELQSKMRSR----AKLLMKRAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 422 DHLILEHNQCIQKAQDAEKRTAVQKEL-----LESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERC-NL 495
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIREIScqqhtLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDlQG 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 496 EKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYHGLAQQkvEKITESKNKLAYENGKLQIKVKQLEEQV 575
Cdd:TIGR00618 425 QLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQ--LQTKEQIHLQETRKKAVVLARLLELQEE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 576 QSFTDTSLQNDHLRKMNKYLqtkyaqvksilersKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEA 655
Cdd:TIGR00618 503 PCPLCGSCIHPNPARQDIDN--------------PGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 656 KEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEiagLKKERDLNQQRVQKLEAEVDQWQarmLVMEDQHNSEIES 735
Cdd:TIGR00618 569 QQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEA---EDMLACEQHALLRKLQPEQDLQD---VRLHLQQCSQELA 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 736 LQKA------LGVAREDNR-KLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIE 808
Cdd:TIGR00618 643 LKLTalhalqLTLTQERVReHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 809 alrkQFQTERETTKKVAQREVAEQiEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQ 888
Cdd:TIGR00618 723 ----IENASSSLGSDLAAREDALN-QSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREED 797
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462572041 889 QELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEE 944
Cdd:TIGR00618 798 THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-797 |
9.53e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 9.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 160 LRQQLRAVKEEEDKA------QDEVQRLTATLKIAS--QTKKNAAIIEEELKTTKRKMNLKIQELRRQLAQEKYLRESLE 231
Cdd:COG1196 198 LERQLEPLERQAEKAeryrelKEELKELEAELLLLKlrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 232 ksasAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQELLAQEQKKKEELEiatSQLKSDLTSRDDLISKLVEEN 311
Cdd:COG1196 278 ----ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE---EELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 312 KNLQISFNKEHEENAYLRSEIMSLHEASEKAQVLNDQLTKKcselscmLQTVTMEKARIIADHQAILQVEQKMmtQTFQE 391
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA-------LRAAAELAAQLEELEEAEEALLERL--ERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 392 QNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTavqkELLESTIARLRGELEASMQEKKSLL 471
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA----ALLEAALAELLEELAEAAARLLLLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 472 EEKERFQREVNKTekeivqercnLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYHGLAQQKVEKIT 551
Cdd:COG1196 498 EAEADYEGFLEGV----------KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 552 ESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSIL--ERSKEELSRTVKCRNAALKESQK 629
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLlgRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 630 LKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQ 709
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 710 KLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQ-----------ALQTNNHLQTKLDHIQEQLESK 778
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEReiealgpvnllAIEEYEELEERYDFLSEQREDL 807
|
650
....*....|....*....
gi 2462572041 779 ELERQNLETFKDRMTEESK 797
Cdd:COG1196 808 EEARETLEEAIEEIDRETR 826
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
692-912 |
2.28e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 692 SEIAGLKKERDLNQQRVQKLEAEVDQWQARmlvmEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHI 771
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 772 QEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKkvAQREVAEQIEKELKQMELIKDQYQKKN 851
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAP--ARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462572041 852 YEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEE 912
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
143-342 |
2.64e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 143 QEEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLkiaSQTKKNAAIIEEELKTTKRKMN---LKIQELRRQ 219
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI---AALARRIRALEQELAALEAELAeleKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 220 LA-QEKYLRESL-----------------EKSASAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQELLAQEQK 281
Cdd:COG4942 99 LEaQKEELAELLralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462572041 282 KKEELEIATSQLKSDLTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKA 342
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
387-911 |
3.19e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 3.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 387 QTFQEQNLLLDAaHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTavqkELLESTIARLRGELEASMQE 466
Cdd:PRK02224 234 ETRDEADEVLEE-HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERL----EELEEERDDLLAEAGLDDAD 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 467 KKSLLEEKERFQREVNKTEKEIVQERCNLEkelAKNKvDINTLTHNLQTLEEENKHLADQMASLElqqvtsdyhglaqqk 546
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQ---AHNE-EAESLREDADDLEERAEELREEAAELE--------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 547 vEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKyaqvKSILERSKEELSRTVKCRNAALKE 626
Cdd:PRK02224 370 -SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE----RDELREREAELEATLRTARERVEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 627 SQKLKE---------------DLEAVEDREnKKVGNFQRQLAEAKEDNCKVTIMLENvLASHSKMQGALEKVQIELGRRD 691
Cdd:PRK02224 445 AEALLEagkcpecgqpvegspHVETIEEDR-ERVEELEAELEDLEEEVEEVEERLER-AEDLVEAEDRIERLEERREDLE 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 692 SEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAmSLEQALQTNNHLQTKLDHI 771
Cdd:PRK02224 523 ELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-ELKERIESLERIRTLLAAI 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 772 ----------QEQLESK-ELERQNLETFKDRMTEESKVEAELHAERIEALRKqfqterettKKVAQREVAEQIEKELKQM 840
Cdd:PRK02224 602 adaedeierlREKREALaELNDERRERLAEKRERKRELEAEFDEARIEEARE---------DKERAEEYLEQVEEKLDEL 672
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462572041 841 ELIKDqyqkknyeqslsiqrfvcemtNLQKEMQMlaksqydasVRNKQQElhLEAERKIRQELENRCQELE 911
Cdd:PRK02224 673 REERD---------------------DLQAEIGA---------VENELEE--LEELRERREALENRVEALE 711
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
131-661 |
5.00e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 5.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 131 KTAFLKDRLNAIQEEHSKDLKLLHlKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKMN 210
Cdd:PTZ00121 1261 RMAHFARRQAAIKAEEARKADELK-KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE 1339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 211 LKIQELRRQLAQEKYLRESLEKS---ASAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQEllAQEQKKKEELE 287
Cdd:PTZ00121 1340 EAKKAAEAAKAEAEAAADEAEAAeekAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK--ADELKKAAAAK 1417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 288 IATSQL--KSDLTSRDDLISKLVEENKNLQISfnKEHEENAYLRSEIMSLHEASEKAqvlnDQLTKKCSELScmlqtvTM 365
Cdd:PTZ00121 1418 KKADEAkkKAEEKKKADEAKKKAEEAKKADEA--KKKAEEAKKAEEAKKKAEEAKKA----DEAKKKAEEAK------KA 1485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 366 EKARIIADHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLI-----LEHNQCIQKAQDAEK 440
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKkkadeLKKAEELKKAEEKKK 1565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 441 RTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEEN 520
Cdd:PTZ00121 1566 AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 521 KHLADQMASLElqqvtsDYHGLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYA 600
Cdd:PTZ00121 1646 KKKAEELKKAE------EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462572041 601 QVKsilersKEELSRTVKCRNAALKESQKLKEDLEA-VEDRENKKVGNFQRQLAEAKEDNCK 661
Cdd:PTZ00121 1720 ELK------KAEEENKIKAEEAKKEAEEDKKKAEEAkKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
771-973 |
5.50e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 5.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 771 IQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVA------------EQIEKELK 838
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEEltaelqeleeklEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 839 QMELIKDQYQKKNYEQSLSIQRfvcemtnLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLK 918
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISR-------LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462572041 919 KCKEATENTLKEA---SVESEQITANLEEAHRWFKHRFDGLQLELTKNRLQRPSGEDR 973
Cdd:TIGR02168 351 EELESLEAELEELeaeLEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
433-954 |
5.58e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 5.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 433 QKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHN 512
Cdd:PTZ00121 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA 1415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 513 LQTLEEENKHLADQMASLELQQVTSDYHGLAQQKVEKITESKNKlayENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMN 592
Cdd:PTZ00121 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA---EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 593 KYLQTKYAQVKSILERSK--EELSRTVKCRNA-ALKESQKLKEDLEAVEDRENKKVGNFQR--------------QLAEA 655
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKkaDEAKKAEEAKKAdEAKKAEEAKKADEAKKAEEKKKADELKKaeelkkaeekkkaeEAKKA 1572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 656 KEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEaEVDQWQARMLVMEDQHNSEIES 735
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE-EEKKKVEQLKKKEAEEKKKAEE 1651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 736 LQKA---LGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKveaelhaeRIEALRK 812
Cdd:PTZ00121 1652 LKKAeeeNKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK--------KAEELKK 1723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 813 QfqtERETTKKVAQREVAEQIEKElKQMELIKDQYQKKNyeqslsIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELH 892
Cdd:PTZ00121 1724 A---EEENKIKAEEAKKEAEEDKK-KAEEAKKDEEEKKK------IAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462572041 893 LEAERKIRQELENRCQELE---ETVRHLKKCKEATENTLKEASVESEQItanLEEAHRWFKHRFD 954
Cdd:PTZ00121 1794 MEVDKKIKDIFDNFANIIEggkEGNLVINDSKEMEDSAIKEVADSKNMQ---LEEADAFEKHKFN 1855
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
471-955 |
7.98e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 7.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 471 LEEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYHGLAQQKVEKI 550
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 551 TESKNklayengkLQIKVKQLEEQVQsftdtslqnDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKL 630
Cdd:COG4717 156 EELRE--------LEEELEELEAELA---------ELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 631 KEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQK 710
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 711 LEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQnletfKD 790
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQE-----IA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 791 RMTEESKVEAElhaERIEALRKQFQTERETTKKVAQREvaEQIEKELKQMELIKDQYQKKNYEQSLsiQRFVCEMTNLQK 870
Cdd:COG4717 374 ALLAEAGVEDE---EELRAALEQAEEYQELKEELEELE--EQLEELLGELEELLEALDEEELEEEL--EELEEELEELEE 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 871 EMQMLAKSQYDASVRNKQQELHLEAERKI--RQELENRCQELEETVRHLKKCKEATENTLKEAsvESEQITANLEEAHRW 948
Cdd:COG4717 447 ELEELREELAELEAELEQLEEDGELAELLqeLEELKAELRELAEEWAALKLALELLEEAREEY--REERLPPVLERASEY 524
|
....*..
gi 2462572041 949 FKHRFDG 955
Cdd:COG4717 525 FSRLTDG 531
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
95-374 |
8.28e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 8.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 95 KNCEFLVNRMCRLESLMQSLKMNIFRLQTEKDLNPQKTAFLKDRLNA-IQEEHSK--DLKLLHLKVMNL-RQQLRAV--- 167
Cdd:pfam15921 572 ENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAkIRELEARvsDLELEKVKLVNAgSERLRAVkdi 651
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 168 KEEEDKAQDEVQRLTATLKIASQT----KKNAAIIEEELKTTKRKMNLKIQELRRQLAQEKYLRESLEKSASAMLLKIQE 243
Cdd:pfam15921 652 KQERDQLLNEVKTSRNELNSLSEDyevlKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 244 MGSTVEVERKQVHilqqnciALRDSIQSAQELLAQEQKKKEELEIATSQLKSDLTSrddlisklveenknLQISFNKEHE 323
Cdd:pfam15921 732 MQKQITAKRGQID-------ALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELST--------------VATEKNKMAG 790
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2462572041 324 ENAYLRSEIMSLHEASEKAQVLNDQLTKKCSELSCMLQTVTMEKARIIADH 374
Cdd:pfam15921 791 ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQH 841
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
135-657 |
1.68e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 135 LKDRLNAIQEEHSKDLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKMNLKIQ 214
Cdd:pfam05483 217 LKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 215 EL-------RRQLAQEKYLRESLEKSASAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQELLAQEQKKKEELE 287
Cdd:pfam05483 297 ELedikmslQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 288 IATSQLKSDLTSRDDLISKLVEENKNLQIsfnkEHEENAYLRSEIMSLHEASEKAQVLNDQLTKKCSELSCMLQTVTMEK 367
Cdd:pfam05483 377 DQLKIITMELQKKSSELEEMTKFKNNKEV----ELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEI 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 368 ARIIADHQAILQVEQKMMTQTfqeqnllldaahASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQD---------- 437
Cdd:pfam05483 453 HDLEIQLTAIKTSEEHYLKEV------------EDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDmtlelkkhqe 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 438 -------AEKRTAVQKELLESTIARLRGELEASMQ-------EKKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKNK 503
Cdd:pfam05483 521 diinckkQEERMLKQIENLEEKEMNLRDELESVREefiqkgdEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLK 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 504 VDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYH--------GLAQQKVEKITESKNKlayENGKLQIKVKQLEEQV 575
Cdd:pfam05483 601 KQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKvnklelelASAKQKFEEIIDNYQK---EIEDKKISEEKLLEEV 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 576 QSFTDTSLQNDHLRK-MNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAE 654
Cdd:pfam05483 678 EKAKAIADEAVKLQKeIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLS 757
|
...
gi 2462572041 655 AKE 657
Cdd:pfam05483 758 LKK 760
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
156-749 |
3.64e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 156 KVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEE----------LKTTKRKMNLKIQELRR----QLA 221
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEeirkfeearmAHFARRQAAIKAEEARKadelKKA 1286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 222 QEKY----LRESLEKSASAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQELL----AQEQKKKEELEIATSQL 293
Cdd:PTZ00121 1287 EEKKkadeAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAeaakAEAEAAADEAEAAEEKA 1366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 294 KSDLTSRD------DLISKLVEENKNLQiSFNKEHEENAYLRSEIMSLHEASEKAqvlnDQLTKKCSELScmlqtvTMEK 367
Cdd:PTZ00121 1367 EAAEKKKEeakkkaDAAKKKAEEKKKAD-EAKKKAEEDKKKADELKKAAAAKKKA----DEAKKKAEEKK------KADE 1435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 368 ARIIADHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQlqahLDHLILEHNQCIQKAQDAEKRTAVQKE 447
Cdd:PTZ00121 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK----ADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 448 LLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKeiVQERCNLEKELAKNKVDintlthnLQTLEEENKHLADQM 527
Cdd:PTZ00121 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE--LKKAEELKKAEEKKKAE-------EAKKAEEDKNMALRK 1582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 528 ASlelqqvtsdyhgLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYA-QVKSIL 606
Cdd:PTZ00121 1583 AE------------EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAeEKKKAE 1650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 607 ERSKEELSRTVKCRNAALK--ESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEdnckvtimlenvlASHSKMQGALEKVQ 684
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKaeEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-------------AEELKKKEAEEKKK 1717
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462572041 685 IELGRRDSEIAGLKKERdlnqqrvQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRK 749
Cdd:PTZ00121 1718 AEELKKAEEENKIKAEE-------AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
120-797 |
4.00e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 120 RLQTEKDLNPQKTAFLKDRLNAIQEE--HSKDLKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAI 197
Cdd:TIGR00618 202 RSQLLTLCTPCMPDTYHERKQVLEKElkHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 198 IEEELKTTKRKMNL--------KIQELRRQLAQEKYLRESLEKSASAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSI 269
Cdd:TIGR00618 282 TQERINRARKAAPLaahikavtQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAH 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 270 QSAQELLAQEQKKKEELE--IATSQLKSDLTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKAQvlnD 347
Cdd:TIGR00618 362 EVATSIREISCQQHTLTQhiHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQ---R 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 348 QLTKKCSELSCMLQTVTMEKARIIADHQAILQVEQKMMT-QTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHL----- 421
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTkEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPnparq 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 422 DHLILEHNQC--------IQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERC 493
Cdd:TIGR00618 519 DIDNPGPLTRrmqrgeqtYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 494 NLEKELaknKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDyhgLAQQKVEKITESKNKLAYENGKLQIKVKQLEE 573
Cdd:TIGR00618 599 LTEKLS---EAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQE---LALKLTALHALQLTLTQERVREHALSIRVLPK 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 574 QVQSFTDTSLQN-DHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQL 652
Cdd:TIGR00618 673 ELLASRQLALQKmQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQA 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 653 AEAkednckvtiMLENVLASHSKMQGALEKVQielgrRDSEIAGLKKERDLNQQRVQKLEAEVDQwqarmlvMEDQHNSE 732
Cdd:TIGR00618 753 RTV---------LKARTEAHFNNNEEVTAALQ-----TGAELSHLAAEIQFFNRLREEDTHLLKT-------LEAEIGQE 811
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462572041 733 IESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESK 797
Cdd:TIGR00618 812 IPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSD 876
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
127-934 |
4.94e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 4.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 127 LNPQKTAFLKDRLNAIQEEHSKDLKLLHLKVMNLRQQLRAVKEEEdkAQDEVQRLTATLKIASQTKKNAAIIEEELKTTK 206
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEE--KEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 207 RKMNLKIQELRRQLAQEKYLRESLEKSASAMLLKIQEMGSTVEVERKQVHILQQncialRDSIQSAQELLAQEQKKKEEL 286
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ-----EKLEQLEEELLAKKKLESERL 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 287 EIATSQLKSDLTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKAQVLNDQLTKKCSELSCMLQTVTME 366
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 367 KARIIADHQAILQVEQKMMtqtfQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTAVQK 446
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQ----LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 447 ELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKnkvdintltHNLQTLEEENKHLADQ 526
Cdd:pfam02463 543 VAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVL---------EIDPILNLAQLDKATL 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 527 MASLELQQVTSDYHGLAQQKVEKITESKNKLAYENgklqIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSIL 606
Cdd:pfam02463 614 EADEDDKRAKVVEGILKDTELTKLKESAKAKESGL----RKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 607 ERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVT-IMLENVLASHSKMQGALEKVQI 685
Cdd:pfam02463 690 AKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDeEEEEEEKSRLKKEEKEEEKSEL 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 686 ELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQwqarmlvmEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQ 765
Cdd:pfam02463 770 SLKEKELAEEREKTEKLKVEEEKEEKLKAQEE--------ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 766 TKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKD 845
Cdd:pfam02463 842 LKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEE 921
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 846 QYQKKNYEQSL---SIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKE 922
Cdd:pfam02463 922 RIKEEAEILLKyeeEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLE 1001
|
810
....*....|..
gi 2462572041 923 ATENTLKEASVE 934
Cdd:pfam02463 1002 EEKKKLIRAIIE 1013
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
150-740 |
6.79e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 150 LKLLHLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTkRKMNLKIQELRRQLAQEKYLRES 229
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL-EKEVKELEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 230 LEKSASAMLLKIQEMGSTVEVERKQVHILQQNCIALrdsiqsaqellaQEQKKKEELEIATSQLKSDLTSRDDLISKLVE 309
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL------------KELKEKAEEYIKLSEFYEEYLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 310 EnknlqisfnkeheenayLRSEIMSLHEASEKAQVLNDQLtkkcSELSCMLQTVTMEKARIIADHQAILQVEQKmMTQTF 389
Cdd:PRK03918 318 R-----------------LEEEINGIEERIKELEEKEERL----EELKKKLKELEKRLEELEERHELYEEAKAK-KEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 390 QEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAqdAEKRTAVQKELLESTIARLRGElEASMQEKKS 469
Cdd:PRK03918 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI--KELKKAIEELKKAKGKCPVCGR-ELTEEHRKE 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 470 LLEEkerFQREVNKTEKEIvQERCNLEKELAKNKVDINTLTHNLQTLeEENKHLADQMASLElqqvtSDYHGLAQQKVEK 549
Cdd:PRK03918 453 LLEE---YTAELKRIEKEL-KEIEEKERKLRKELRELEKVLKKESEL-IKLKELAEQLKELE-----EKLKKYNLEELEK 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 550 ITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILER----SKEELSRTVK------C 619
Cdd:PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEElgfeSVEELEERLKelepfyN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 620 RNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQgaLEKVQIELGRRDSEIAGLKK 699
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE--YEELREEYLELSRELAGLRA 680
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 2462572041 700 ERDLNQQRVQKLEAEVDQWQARMLVMEdQHNSEIESLQKAL 740
Cdd:PRK03918 681 ELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKLEKAL 720
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
490-837 |
7.30e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.74 E-value: 7.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 490 QERCNLEKELAKNKVDINT-LTHNLQTLEEENKHLADQMASLELQQVTSDYH--GLAQQKVEKITESKNK-LAYENGKLQ 565
Cdd:PLN02939 45 QQKKKRGKNIAPKQRSSNSkLQSNTDENGQLENTSLRTVMELPQKSTSSDDDhnRASMQRDEAIAAIDNEqQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 566 IKVKQLEEQVQSFTDTSlqnDHLRKMNKYLQTKYAQVKSILeRSKEELSRTVKC-------RNAALKESQKLKEDLEAVE 638
Cdd:PLN02939 125 LSDFQLEDLVGMIQNAE---KNILLLNQARLQALEDLEKIL-TEKEALQGKINIlemrlseTDARIKLAAQEKIHVEILE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 639 DRENKKVGNFQRQLAEAKEDNCKV-----TIMLENVLAShSKMQgALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEA 713
Cdd:PLN02939 201 EQLEKLRNELLIRGATEGLCVHSLskeldVLKEENMLLK-DDIQ-FLKAELIEVAETEERVFKLEKERSLLDASLRELES 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 714 EVDQWQARMLVME----DQHNSEIESLQKALGVAREDNRKLAMSLEQalqtNNHLQTKLDHIQEQLESK----------E 779
Cdd:PLN02939 279 KFIVAQEDVSKLSplqyDCWWEKVENLQDLLDRATNQVEKAALVLDQ----NQDLRDKVDKLEASLKEAnvskfssykvE 354
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462572041 780 LERQNLETFKDRM---TEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKEL 837
Cdd:PLN02939 355 LLQQKLKLLEERLqasDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEF 415
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
687-967 |
7.42e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 7.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 687 LGR--RDSEIAGLKKERDLNQQRVQKLEAEVDQWQaRMLvmedQHNSEIESLQKALGVAREDNrklaMSLEQALQTNNHL 764
Cdd:PRK04863 779 FGRaaREKRIEQLRAEREELAERYATLSFDVQKLQ-RLH----QAFSRFIGSHLAVAFEADPE----AELRQLNRRRVEL 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 765 QTKLdhiqEQLESKELE-RQNLETFKDRMTEESKVEAEL-------HAERIEALRKQFQTERETTKKVAQREVA-EQIEK 835
Cdd:PRK04863 850 ERAL----ADHESQEQQqRSQLEQAKEGLSALNRLLPRLnlladetLADRVEEIREQLDEAEEAKRFVQQHGNAlAQLEP 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 836 EL-------KQMELIKDQYQKKNYEQSLSIQRfVCEMTNL---------QKEMQMLAKSQyDASVRNKQQELHLEAER-K 898
Cdd:PRK04863 926 IVsvlqsdpEQFEQLKQDYQQAQQTQRDAKQQ-AFALTEVvqrrahfsyEDAAEMLAKNS-DLNEKLRQRLEQAEQERtR 1003
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462572041 899 IRQEL---ENRCQELEETVRHLKKCKEATENTLKEASVESE----QITANLEEAHRwfkHRFDGLQLELTKNRLQR 967
Cdd:PRK04863 1004 AREQLrqaQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQdlgvPADSGAEERAR---ARRDELHARLSANRSRR 1076
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
135-947 |
8.95e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 8.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 135 LKDRLNAIQEEHSKDLKLLhLKVMNLRQQLRAVKEEEDKAQDEVQRLTATLKIAS--QTKKNAAIIEEELKTTKRKMNLK 212
Cdd:pfam02463 171 KKEALKKLIEETENLAELI-IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEylLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 213 IQEL-----RRQLAQEKYLRESLEKSASAMLLKIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQELLAQEQKKKEELE 287
Cdd:pfam02463 250 QEEIesskqEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 288 IATSQLKSDLTSRddlisklVEENKNLQISFNKEHEENAYLRSEimslheasEKAQVLNDQLTKKCSElscmlqtvtmek 367
Cdd:pfam02463 330 LKKEKEEIEELEK-------ELKELEIKREAEEEEEEELEKLQE--------KLEQLEEELLAKKKLE------------ 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 368 ariiadhqailqveqkmmTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNqciqkaQDAEKRTAVQKE 447
Cdd:pfam02463 383 ------------------SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK------EELEILEEEEES 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 448 LLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQErcNLEKELAKNKVDINTLTHNLQTLEEENKHLADQM 527
Cdd:pfam02463 439 IELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL--QEQLELLLSRQKLEERSQKESKARSGLKVLLALI 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 528 ASLELQQVTSDYHGLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILe 607
Cdd:pfam02463 517 KDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIA- 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 608 rskeelsrtVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEdnckvTIMLENVLASHSKMQGALEKVQIEL 687
Cdd:pfam02463 596 ---------VLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTK-----LKESAKAKESGLRKGVSLEEGLAEK 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 688 GRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTK 767
Cdd:pfam02463 662 SEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLL 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 768 LDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAEQIEKELKQMELIKDQY 847
Cdd:pfam02463 742 KQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQ 821
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 848 QKKNYEQSLSIQrfvcEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENT 927
Cdd:pfam02463 822 LLIEQEEKIKEE----ELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKE 897
|
810 820
....*....|....*....|
gi 2462572041 928 LKEASVESEQITANLEEAHR 947
Cdd:pfam02463 898 EKKELEEESQKLNLLEEKEN 917
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
754-971 |
1.25e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 754 LEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQT--------ERETTKKVA 825
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAierqlaslEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 826 QR-EVAEQIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMT------------NLQKEMQMLAKSQYDASVRNKQQELH 892
Cdd:TIGR02169 259 EIsELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaeiaslersiaeKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 893 LEAERKIRQE------LENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAhrwfKHRFDGLQLELTK--NR 964
Cdd:TIGR02169 339 EELEREIEEErkrrdkLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL----KREINELKRELDRlqEE 414
|
....*..
gi 2462572041 965 LQRPSGE 971
Cdd:TIGR02169 415 LQRLSEE 421
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
264-534 |
1.55e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 264 ALRDSIQSAQELLAQEQKKKEEL-EIATSQLKSDL--TSRDDLISKLVEENKNLQisfnKEHEENAYLRSEIMSLHEASE 340
Cdd:PRK11281 84 QLKQQLAQAPAKLRQAQAELEALkDDNDEETRETLstLSLRQLESRLAQTLDQLQ----NAQNDLAEYNSQLVSLQTQPE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 341 KAQVLNDQLTKKCSELSCMLQTVTMEKARIIADHQAILQVEQKMM-TQTFQEQNLLldAAHASITNELQTVQNEKTQLQA 419
Cdd:PRK11281 160 RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLnAQNDLQRKSL--EGNTQLQDLLQKQRDYLTARIQ 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 420 HLDHlileHNQCIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEK--EIVQErcNLEk 497
Cdd:PRK11281 238 RLEH----QLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKlnTLTQQ--NLR- 310
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462572041 498 elAKNKVDinTLTHNLQTLEE--------------------------ENKHLADQMASLELQQ 534
Cdd:PRK11281 311 --VKNWLD--RLTQSERNIKEqisvlkgslllsrilyqqqqalpsadLIEGLADRIADLRLEQ 369
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
359-979 |
1.70e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 359 MLQTVTMEKARIIADHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQ---TVQNEKTQLQAHLDHLILEHNQCIQKA 435
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKhlrEALQQTQQSHAYLTQKREAQEEQLKKQ 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 436 QDAEKRTAVQKEL--LESTIARLRGELEASMQEKKSLLEEK---------ERFQREVNKTEKEIVQERCNlEKELAKNKV 504
Cdd:TIGR00618 260 QLLKQLRARIEELraQEAVLEETQERINRARKAAPLAAHIKavtqieqqaQRIHTELQSKMRSRAKLLMK-RAAHVKQQS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 505 DINTLTHNLQTLEEENKHLADQMASL-----ELQQVTSDYHGLA--QQKVEKITESKNKLAYENGKLQIKVKQLEEQVQS 577
Cdd:TIGR00618 339 SIEEQRRLLQTLHSQEIHIRDAHEVAtsireISCQQHTLTQHIHtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 578 FTDTSLQNDHLRKMNKyLQTKYAQvksILERSKEELSRTVKCRNAALKES-QKLKEDLEAVEDREN---------KKVGN 647
Cdd:TIGR00618 419 FRDLQGQLAHAKKQQE-LQQRYAE---LCAAAITCTAQCEKLEKIHLQESaQSLKEREQQLQTKEQihlqetrkkAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 648 FQRQLAEAKEDNCKVTI-----------------MLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQK 710
Cdd:TIGR00618 495 RLLELQEEPCPLCGSCIhpnparqdidnpgpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSI 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 711 LeaeVDQWQARMLVMEDQHNsEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKD 790
Cdd:TIGR00618 575 L---TQCDNRSKEDIPNLQN-ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHA 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 791 RMTEESKVEAELHAERIEALRKQFQTERETTKKVAQ---------REVAEQIEKELKQMELIKDQYQKKNYEQSLSIQRF 861
Cdd:TIGR00618 651 LQLTLTQERVREHALSIRVLPKELLASRQLALQKMQsekeqltywKEMLAQCQTLLRELETHIEEYDREFNEIENASSSL 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 862 VCEM-------TNLQKEMQMLAKSQYDASVRNKQQ--------ELHLEAERKIRQELENRCQELEETVRHLKKCKEATEN 926
Cdd:TIGR00618 731 GSDLaaredalNQSLKELMHQARTVLKARTEAHFNnneevtaaLQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQ 810
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 2462572041 927 TLKEASVESEQITANLEEAHRWFKHRFDGLQLELTKNRLQRPSGEDRWQEKDQ 979
Cdd:TIGR00618 811 EIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ 863
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
161-304 |
2.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 161 RQQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKMNL-KIQELRRQLAQEKYLRESLEKSASAMLL 239
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdRLEQLEREIERLERELEERERRRARLEA 366
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462572041 240 KIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQ--------ELLAQEQKKKEELEIATSQLKSdLTSRDDLI 304
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELealeealaEAEAALRDLRRELRELEAEIAS-LERRKSNI 438
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
162-669 |
3.18e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 162 QQLRAVKEEEDKAQDEVQRLTATLKIASQTKKNAAIIEEELKTTKRKMNLKIQELRRQLAQEKYLRESLEKSA-----SA 236
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAeeakkAD 1473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 237 MLLKIQEMGSTVEVERKQVHILQQNCIALR---DSIQSAQELL-AQEQKKKEELEIATSQLKSDLTSRDDLISKLVEENK 312
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKkaaEAKKKADEAKkAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 313 NLQISFNKEHEENAYLRSEIMSLHEASEKAQVLNDQLTKKCSELSCMLQTVTMEKA-RIIADHQAILQVEQKMMTQTFQE 391
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAeEAKKAEEAKIKAEELKKAEEEKK 1633
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 392 QNLLLDAAHASITNELQTVQNEktqlqahldhlilEHNQCIQKAQDAEKRTAVQKELLEstiARLRGELEASMQEKKSLL 471
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKA-------------EEENKIKAAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKKE 1697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 472 EEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHNlqtlEEENKHLADQMASLELQQVTSDYHGLAQQKVEKIT 551
Cdd:PTZ00121 1698 AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE----AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 552 ESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLK 631
Cdd:PTZ00121 1774 RKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHK 1853
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 2462572041 632 EDLEAVEDRENKKVGNFQRQ--LAEAKEDNCKVTIMLENV 669
Cdd:PTZ00121 1854 FNKNNENGEDGNKEADFNKEkdLKEDDEEEIEEADEIEKI 1893
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
691-947 |
3.98e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.97 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 691 DSEIAGLKKERDLNQQRVQKL-----EAEVDQWQARMLVMEDQHNSEIESLQKALgvarEDNRKLAMSLEQALQTNNHLQ 765
Cdd:PRK04778 255 EKEIQDLKEQIDENLALLEELdldeaEEKNEEIQERIDQLYDILEREVKARKYVE----KNSDTLPDFLEHAKEQNKELK 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 766 TKLDHIQE--QLESKELERQnletfkdrmteeskveaELHAERIEALRKQFQ--TERETTKKVAQREVAEQIEKELKQME 841
Cdd:PRK04778 331 EEIDRVKQsyTLNESELESV-----------------RQLEKQLESLEKQYDeiTERIAEQEIAYSELQEELEEILKQLE 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 842 LIKDQYQKknyeqslsiqrfvcemtnLQKEMQMLAKSqydasvrnkqqelhleaERKIRQELENRCQELEETVRHLKKC- 920
Cdd:PRK04778 394 EIEKEQEK------------------LSEMLQGLRKD-----------------ELEAREKLERYRNKLHEIKRYLEKSn 438
|
250 260 270
....*....|....*....|....*....|....*...
gi 2462572041 921 -----------KEATENTLKEASVESEQITANLEEAHR 947
Cdd:PRK04778 439 lpglpedylemFFEVSDEIEALAEELEEKPINMEAVNR 476
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
459-657 |
4.18e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 459 ELEASMQEKKSLLEEKERFQREVNKTEKEIVqercNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQvtsd 538
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEK----ALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 539 yhglaQQKVEKITESKNKLAYENGKLQIKVKQLEEQV----QSFTDTSLQNDHLRKMNKYLQ---TKYAQVKSILERSKE 611
Cdd:COG4942 93 -----AELRAELEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARReqaEELRADLAELAALRA 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462572041 612 ELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKE 657
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA 213
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
467-945 |
4.22e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 467 KKSLLEEKERFQREVNKTEkEIVQERCNLEKELAKNKVDINTLTHNLQTLEEenkhladqmaslELQQVTSDYhglaqQK 546
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTE-NIEELIKEKEKELEEVLREINEISSELPELRE------------ELEKLEKEV-----KE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 547 VEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDtslQNDHLRKMNKYLQTKYAQVKSIlERSKEELSRTVKCRNAALKE 626
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEE---RIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 627 SQKLKEDLEAVEDRENkkvgNFQRQLAEAKEDNCKVtimlenvlashskmqGALEKVQIELGRRDSEIaglkKERDLNQQ 706
Cdd:PRK03918 309 LREIEKRLSRLEEEIN----GIEERIKELEEKEERL---------------EELKKKLKELEKRLEEL----EERHELYE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 707 RVQKLEAEVDQWQARMLVME-DQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQ-----LESKEL 780
Cdd:PRK03918 366 EAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGREL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 781 ERQNLETFKDRMTEE-SKVEAELH--AERIEALRKQFQTERETTKK----VAQREVAEQI---EKELKQMELIKDQYQKK 850
Cdd:PRK03918 446 TEEHRKELLEEYTAElKRIEKELKeiEEKERKLRKELRELEKVLKKeselIKLKELAEQLkelEEKLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 851 NYE-----------QSLSIQRFVCEMTNLQKEMQMLAKSQYDasVRNKQQELHLEAER---KIRQELENRCQELEE---- 912
Cdd:PRK03918 526 EYEklkekliklkgEIKSLKKELEKLEELKKKLAELEKKLDE--LEEELAELLKELEElgfESVEELEERLKELEPfyne 603
|
490 500 510
....*....|....*....|....*....|....*
gi 2462572041 913 --TVRHLKKCKEATENTLKEASVESEQITANLEEA 945
Cdd:PRK03918 604 ylELKDAEKELEREEKELKKLEEELDKAFEELAET 638
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
677-841 |
5.72e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 677 QGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLvmeDQHNSEIESLQKALGVAREDNRKLAMSLEQ 756
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR---GNGGDRLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 757 ALQTNNHLQTKLDHIQEQLESKeleRQNLETFKDRMTEEskvEAELHAERIEALRKQFQTEREttkkvaqrevAEQIEKE 836
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAAL---RAEAAALLEALEEE---LEALEEALAEAEAALRDLRRE----------LRELEAE 427
|
....*
gi 2462572041 837 LKQME 841
Cdd:COG4913 428 IASLE 432
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
490-722 |
6.29e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 490 QERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQ-QVTSDYHGLAQQKVEKITESKNKLAYENGKLQIKV 568
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 569 KQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAqvkSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNF 648
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDF---LDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462572041 649 QRQLAEAKEDnckvtimLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARM 722
Cdd:COG4942 177 EALLAELEEE-------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
687-839 |
6.89e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 687 LGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLV---MEDQHNSEIESLQKALGVAREDNRklamsLEQALQTNNh 763
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREAlqrLAEYSWDEIDVASAEREIAELEAE-----LERLDASSD- 685
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462572041 764 lqtKLDHIQEQLESKELERQNLE-TFKDRMTEESKVEAELhaERIEALRKQFQTERETTKKVAQREVAEQIEKELKQ 839
Cdd:COG4913 686 ---DLAALEEQLEELEAELEELEeELDELKGEIGRLEKEL--EQAEEELDELQDRLEAAEDLARLELRALLEERFAA 757
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
406-714 |
7.73e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 7.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 406 ELQTVQNEKTQLQAHLDHLILEHNQ-CIQKAQDAEKRTAVQKELLESTIARLR-----GELEASMQEKKSLLEEKERFQR 479
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQlCEEKNALQEQLQAETELCAEAEEMRARlaarkQELEEILHELESRLEEEEERSQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 480 EVNKTEKEIVQercnlekelaknkvdintlthNLQTLEEENKHLADQMASLELQQVTSDyhglaqQKVEKITESKNKLAY 559
Cdd:pfam01576 93 QLQNEKKKMQQ---------------------HIQDLEEQLDEEEAARQKLQLEKVTTE------AKIKKLEEDILLLED 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 560 ENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILE--RSKEELSRtvkcrnaalKESQKLKEDLEAV 637
Cdd:pfam01576 146 QNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEerLKKEEKGR---------QELEKAKRKLEGE 216
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462572041 638 EDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKerDLNQQRVQKLEAE 714
Cdd:pfam01576 217 STDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQE--DLESERAARNKAE 291
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
454-944 |
8.96e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.42 E-value: 8.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 454 ARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEKElaknkvdINTLTHNLQTLEEENKHLadQMASLELQ 533
Cdd:TIGR01612 536 AKLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKE-------IKDLFDKYLEIDDEIIYI--NKLKLELK 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 534 qvtsdyhglaqqkvEKITESKNKLAYEngKLQIKVKQLEEQVQSFTDtSLQNDHLRKMNKYLQTK---YAQVKSILERSK 610
Cdd:TIGR01612 607 --------------EKIKNISDKNEYI--KKAIDLKKIIENNNAYID-ELAKISPYQVPEHLKNKdkiYSTIKSELSKIY 669
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 611 E--------ELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNC--KVTIMLENVLASHSKMQGAL 680
Cdd:TIGR01612 670 EddidalynELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIenKKNELLDIIVEIKKHIHGEI 749
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 681 EKvqiELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEI-------ESLQKALGVAREDNRKLAMS 753
Cdd:TIGR01612 750 NK---DLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQInidnikdEDAKQNYDKSKEYIKTISIK 826
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 754 LEQALQTNNHLQTKLDHIQEQLES----KELERQNLETFKDRMTE-ESKVEAELHAERIEALRKQFQTERETTKkvaqrE 828
Cdd:TIGR01612 827 EDEIFKIINEMKFMKDDFLNKVDKfinfENNCKEKIDSEHEQFAElTNKIKAEISDDKLNDYEKKFNDSKSLIN-----E 901
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 829 VAEQIEKELKQMELIK--DQYQKKNYEQSLSIQRFVCEMTNLQ----------KEMQMLAKS---QYDASVRNKQQELHL 893
Cdd:TIGR01612 902 INKSIEEEYQNINTLKkvDEYIKICENTKESIEKFHNKQNILKeilnknidtiKESNLIEKSykdKFDNTLIDKINELDK 981
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 2462572041 894 EAERKIRQELENRCQELEETVRHLKK-CKEATENTLKEASVESEQITANLEE 944
Cdd:TIGR01612 982 AFKDASLNDYEAKNNELIKYFNDLKAnLGKNKENMLYHQFDEKEKATNDIEQ 1033
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
159-343 |
8.99e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 8.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 159 NLRQQLRAVKEEEDKAQDEVQRLTATLkiaSQTKKNAAIIEEELKTTKRKMNLKIQELRRQLAQEKYLRESLEKSASAM- 237
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAEL---EELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALy 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462572041 238 -----------LL----------KIQEMGSTVEVERKQVHILQQNCIALRDSIQSAQELLAQEQKKKEELEIATSQLKSD 296
Cdd:COG3883 97 rsggsvsyldvLLgsesfsdfldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462572041 297 LTSRDDLISKLVEENKNLQISFNKEHEENAYLRSEIMSLHEASEKAQ 343
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| |
