|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1581-1691 |
7.05e-69 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 226.32 E-value: 7.05e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1581 VIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGaEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATV 1660
Cdd:pfam01413 2 LIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLSTV 80
|
90 100 110
....*....|....*....|....*....|..
gi 2462628163 1661 DvsDMFSKPQSETLKAGD-LRTRISRCQVCMK 1691
Cdd:pfam01413 81 E--EQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1470-1577 |
6.68e-63 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 209.37 E-value: 6.68e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1470 FLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASrNDYSYWLST 1549
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 2462628163 1550 PE---PMPMSMQPLKGQSIQPFISRCAVCEA 1577
Cdd:pfam01413 80 VEeqfRKPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
469-703 |
8.15e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.71 E-value: 8.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 469 DKGLQGEQGVKGDKGDTCfnciGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGS 548
Cdd:NF038329 151 PPGPQGERGEKGPAGPQG----EAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 549 KGEPGDILTfpGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERgppgnpglpglpgnigpmgpp 628
Cdd:NF038329 227 AGPAGDGQQ--GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV--------------------- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462628163 629 gfgppgpvgekGIQGVAGNPGQPGIPGPKGDPGQTitqpGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK 703
Cdd:NF038329 284 -----------GPAGKDGQNGKDGLPGKDGKDGQN----GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
969-1231 |
1.08e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 72.25 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 969 GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGP 1048
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1049 PGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGqpglpgf 1128
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAG------- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1129 pgtpgppgpkgisgppgnpglpgepgPVGGGGHPGQPGPPGEKGKPGQ---DGIPGPAGQKGEpgqpgfgnpgpPGLPGL 1205
Cdd:NF038329 270 --------------------------PDGPDGKDGERGPVGPAGKDGQngkDGLPGKDGKDGQ-----------NGKDGL 312
|
250 260
....*....|....*....|....*.
gi 2462628163 1206 SGQKGDGGLPGIPGNPGLPGPKGEPG 1231
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1170-1355 |
1.55e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 59.15 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1170 EKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLpgLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1249
Cdd:NF038329 142 ETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1250 PALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGN---------PG 1320
Cdd:NF038329 220 PAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKdgqngkdglPG 299
|
170 180 190
....*....|....*....|....*....|....*
gi 2462628163 1321 RPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1355
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKD 334
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
767-995 |
3.73e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.36 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 767 PGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGlhGI 846
Cdd:NF038329 128 AGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPA--GE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 847 PGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL 926
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462628163 927 KGDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGYQGLPGDP 995
Cdd:NF038329 286 AGKDGQNGKDGLPGKDGKDGQNGKD--------------GLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1581-1691 |
7.05e-69 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 226.32 E-value: 7.05e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1581 VIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGaEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATV 1660
Cdd:pfam01413 2 LIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLSTV 80
|
90 100 110
....*....|....*....|....*....|..
gi 2462628163 1661 DvsDMFSKPQSETLKAGD-LRTRISRCQVCMK 1691
Cdd:pfam01413 81 E--EQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1470-1577 |
6.68e-63 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 209.37 E-value: 6.68e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1470 FLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASrNDYSYWLST 1549
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 2462628163 1550 PE---PMPMSMQPLKGQSIQPFISRCAVCEA 1577
Cdd:pfam01413 80 VEeqfRKPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1579-1692 |
3.46e-62 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 207.63 E-value: 3.46e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1579 AVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTsAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYA-NSYSFWL 1657
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....*
gi 2462628163 1658 ATVDVSDMFSKPQSETLKAGDLRTRISRCQVCMKR 1692
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1469-1578 |
2.20e-55 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 187.98 E-value: 2.20e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1469 GFLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLS 1548
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 2462628163 1549 TPEP-----MPMSMQPLKGQsIQPFISRCAVCEAP 1578
Cdd:smart00111 81 TIEPsdqftAPRPMTPKAGD-LRPYISRCQVCEKP 114
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
469-703 |
8.15e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.71 E-value: 8.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 469 DKGLQGEQGVKGDKGDTCfnciGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGS 548
Cdd:NF038329 151 PPGPQGERGEKGPAGPQG----EAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 549 KGEPGDILTfpGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERgppgnpglpglpgnigpmgpp 628
Cdd:NF038329 227 AGPAGDGQQ--GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV--------------------- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462628163 629 gfgppgpvgekGIQGVAGNPGQPGIPGPKGDPGQTitqpGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK 703
Cdd:NF038329 284 -----------GPAGKDGQNGKDGLPGKDGKDGQN----GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
969-1231 |
1.08e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 72.25 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 969 GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGP 1048
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1049 PGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGqpglpgf 1128
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAG------- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1129 pgtpgppgpkgisgppgnpglpgepgPVGGGGHPGQPGPPGEKGKPGQ---DGIPGPAGQKGEpgqpgfgnpgpPGLPGL 1205
Cdd:NF038329 270 --------------------------PDGPDGKDGERGPVGPAGKDGQngkDGLPGKDGKDGQ-----------NGKDGL 312
|
250 260
....*....|....*....|....*.
gi 2462628163 1206 SGQKGDGGLPGIPGNPGLPGPKGEPG 1231
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
848-1117 |
9.19e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 9.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 848 GEKGDPGPPGldVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEmgmmgppgpPGPLGIPGRSGVPGLK 927
Cdd:NF038329 117 GEKGEPGPAG--PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------AGPQGPAGKDGEAGAK 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 928 GDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGyQGLPGDPGQPGLSGQPGLP 1007
Cdd:NF038329 186 GPAGEKGPQGPRGETGPAGEQGPA--------------GPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQ 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1008 GPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSgvpgqpgspGLPGQKGDKGDPgissiGLPGLPGPK 1087
Cdd:NF038329 251 GPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKD---------GLPGKDGKDGQN-----GKDGLPGKD 316
|
250 260 270
....*....|....*....|....*....|
gi 2462628163 1088 GEPGLPGYPGNPGIKGSVGDPGLPGlPGTP 1117
Cdd:NF038329 317 GKDGQPGKDGLPGKDGKDGQPGKPA-PKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1170-1355 |
1.55e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 59.15 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1170 EKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLpgLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1249
Cdd:NF038329 142 ETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1250 PALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGN---------PG 1320
Cdd:NF038329 220 PAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKdgqngkdglPG 299
|
170 180 190
....*....|....*....|....*....|....*
gi 2462628163 1321 RPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1355
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKD 334
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1262-1446 |
3.29e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.91 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1262 QGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPG 1341
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1342 MKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSiiIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGL 1421
Cdd:NF038329 205 EQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG--DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP 282
|
170 180
....*....|....*....|....*
gi 2462628163 1422 PGFDGAGGRKGDPGLPGQPGTRGLD 1446
Cdd:NF038329 283 VGPAGKDGQNGKDGLPGKDGKDGQN 307
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1170-1440 |
8.02e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 53.76 E-value: 8.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1170 EKGKPGQDGIPGPAGQKGEpgqpgfgnpgppglpglsgqKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1249
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGP--------------------RGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1250 PALEGPKGNPGPQGPPGRPgfqglpgpegppglpgnggiKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGlNGMKG 1329
Cdd:NF038329 178 KDGEAGAKGPAGEKGPQGP--------------------RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQG 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1330 DPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPsgqsiiiKGDAGPPGIPGQPGLKGLPGPQGPQGLPGP 1409
Cdd:NF038329 237 PDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE-------RGPVGPAGKDGQNGKDGLPGKDGKDGQNGK 309
|
250 260 270
....*....|....*....|....*....|.
gi 2462628163 1410 TGPPGDPGRNGLPGFDGAGGRKGDPGLPGQP 1440
Cdd:NF038329 310 DGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
532-592 |
1.14e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.41 E-value: 1.14e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462628163 532 GLPGIPGAPGAPGFPGSKGEPGdiltFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLP 592
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPG----PPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1296-1352 |
3.39e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.87 E-value: 3.39e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462628163 1296 GQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSA 1352
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
767-995 |
3.73e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.36 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 767 PGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGlhGI 846
Cdd:NF038329 128 AGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPA--GE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 847 PGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL 926
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462628163 927 KGDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGYQGLPGDP 995
Cdd:NF038329 286 AGKDGQNGKDGLPGKDGKDGQNGKD--------------GLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
773-986 |
8.33e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 43.74 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 773 KGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGD 852
Cdd:NF038329 161 KGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 853 PGPPGLDVP-GPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGmmgppgppgplgipgRSGVPGLKGDDG 931
Cdd:NF038329 241 PGPTGEDGPqGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---------------KDGLPGKDGKDG 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462628163 932 LQGQPGLPGPTGEKGskgepglpgppgpmdpnLLGSKGEKGEPGLPGIPGVSGPK 986
Cdd:NF038329 306 QNGKDGLPGKDGKDG-----------------QPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
294-595 |
1.79e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 42.97 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 294 GEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGIT-IGEKGNIGLPGLP 372
Cdd:NF038329 165 GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgDGQQGPDGDPGPT 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 373 GEKGERGfpgiqgppglpgppgaavmgppgppgfpgergqkgdegppgisipgppgldgqpgapglpgppgpagphipps 452
Cdd:NF038329 245 GEDGPQG------------------------------------------------------------------------- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 453 deicepgppgppgspgDKGLQGEQGVKGDKGDtcfncigtgisgppgqpglpglpgppgslgfPGQKGEKGQAGATGPKG 532
Cdd:NF038329 252 ----------------PDGPAGKDGPRGDRGE-------------------------------AGPDGPDGKDGERGPVG 284
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462628163 533 LPGIPGAPGAPGFPGSKGEPGDiltfPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPK 595
Cdd:NF038329 285 PAGKDGQNGKDGLPGKDGKDGQ----NGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1581-1691 |
7.05e-69 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 226.32 E-value: 7.05e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1581 VIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGaEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATV 1660
Cdd:pfam01413 2 LIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLSTV 80
|
90 100 110
....*....|....*....|....*....|..
gi 2462628163 1661 DvsDMFSKPQSETLKAGD-LRTRISRCQVCMK 1691
Cdd:pfam01413 81 E--EQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1470-1577 |
6.68e-63 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 209.37 E-value: 6.68e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1470 FLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASrNDYSYWLST 1549
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 2462628163 1550 PE---PMPMSMQPLKGQSIQPFISRCAVCEA 1577
Cdd:pfam01413 80 VEeqfRKPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1579-1692 |
3.46e-62 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 207.63 E-value: 3.46e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1579 AVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTsAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYA-NSYSFWL 1657
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....*
gi 2462628163 1658 ATVDVSDMFSKPQSETLKAGDLRTRISRCQVCMKR 1692
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1469-1578 |
2.20e-55 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 187.98 E-value: 2.20e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1469 GFLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLS 1548
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 2462628163 1549 TPEP-----MPMSMQPLKGQsIQPFISRCAVCEAP 1578
Cdd:smart00111 81 TIEPsdqftAPRPMTPKAGD-LRPYISRCQVCEKP 114
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
469-703 |
8.15e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.71 E-value: 8.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 469 DKGLQGEQGVKGDKGDTCfnciGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGS 548
Cdd:NF038329 151 PPGPQGERGEKGPAGPQG----EAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 549 KGEPGDILTfpGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERgppgnpglpglpgnigpmgpp 628
Cdd:NF038329 227 AGPAGDGQQ--GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV--------------------- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462628163 629 gfgppgpvgekGIQGVAGNPGQPGIPGPKGDPGQTitqpGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK 703
Cdd:NF038329 284 -----------GPAGKDGQNGKDGLPGKDGKDGQN----GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
969-1231 |
1.08e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 72.25 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 969 GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGP 1048
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1049 PGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGqpglpgf 1128
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAG------- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1129 pgtpgppgpkgisgppgnpglpgepgPVGGGGHPGQPGPPGEKGKPGQ---DGIPGPAGQKGEpgqpgfgnpgpPGLPGL 1205
Cdd:NF038329 270 --------------------------PDGPDGKDGERGPVGPAGKDGQngkDGLPGKDGKDGQ-----------NGKDGL 312
|
250 260
....*....|....*....|....*.
gi 2462628163 1206 SGQKGDGGLPGIPGNPGLPGPKGEPG 1231
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
848-1117 |
9.19e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 9.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 848 GEKGDPGPPGldVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEmgmmgppgpPGPLGIPGRSGVPGLK 927
Cdd:NF038329 117 GEKGEPGPAG--PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------AGPQGPAGKDGEAGAK 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 928 GDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGyQGLPGDPGQPGLSGQPGLP 1007
Cdd:NF038329 186 GPAGEKGPQGPRGETGPAGEQGPA--------------GPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQ 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1008 GPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSgvpgqpgspGLPGQKGDKGDPgissiGLPGLPGPK 1087
Cdd:NF038329 251 GPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKD---------GLPGKDGKDGQN-----GKDGLPGKD 316
|
250 260 270
....*....|....*....|....*....|
gi 2462628163 1088 GEPGLPGYPGNPGIKGSVGDPGLPGlPGTP 1117
Cdd:NF038329 317 GKDGQPGKDGLPGKDGKDGQPGKPA-PKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1170-1355 |
1.55e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 59.15 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1170 EKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLpgLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1249
Cdd:NF038329 142 ETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1250 PALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGN---------PG 1320
Cdd:NF038329 220 PAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKdgqngkdglPG 299
|
170 180 190
....*....|....*....|....*....|....*
gi 2462628163 1321 RPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1355
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKD 334
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1262-1446 |
3.29e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.91 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1262 QGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPG 1341
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1342 MKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSiiIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGL 1421
Cdd:NF038329 205 EQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG--DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP 282
|
170 180
....*....|....*....|....*
gi 2462628163 1422 PGFDGAGGRKGDPGLPGQPGTRGLD 1446
Cdd:NF038329 283 VGPAGKDGQNGKDGLPGKDGKDGQN 307
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1170-1440 |
8.02e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 53.76 E-value: 8.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1170 EKGKPGQDGIPGPAGQKGEpgqpgfgnpgppglpglsgqKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1249
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGP--------------------RGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1250 PALEGPKGNPGPQGPPGRPgfqglpgpegppglpgnggiKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGlNGMKG 1329
Cdd:NF038329 178 KDGEAGAKGPAGEKGPQGP--------------------RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQG 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 1330 DPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPsgqsiiiKGDAGPPGIPGQPGLKGLPGPQGPQGLPGP 1409
Cdd:NF038329 237 PDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE-------RGPVGPAGKDGQNGKDGLPGKDGKDGQNGK 309
|
250 260 270
....*....|....*....|....*....|.
gi 2462628163 1410 TGPPGDPGRNGLPGFDGAGGRKGDPGLPGQP 1440
Cdd:NF038329 310 DGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
532-592 |
1.14e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.41 E-value: 1.14e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462628163 532 GLPGIPGAPGAPGFPGSKGEPGdiltFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLP 592
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPG----PPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1296-1352 |
3.39e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.87 E-value: 3.39e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462628163 1296 GQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSA 1352
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
767-995 |
3.73e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.36 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 767 PGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGlhGI 846
Cdd:NF038329 128 AGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPA--GE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 847 PGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL 926
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462628163 927 KGDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGYQGLPGDP 995
Cdd:NF038329 286 AGKDGQNGKDGLPGKDGKDGQNGKD--------------GLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
646-705 |
5.92e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 5.92e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 646 GNPGQPGIPGPKGDPGQtitqPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 705
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGP----PGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
535-598 |
6.73e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 6.73e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462628163 535 GIPGAPGAPGFPGSKGEPGDIltfpgmkGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEP 598
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPP-------GPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
773-986 |
8.33e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 43.74 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 773 KGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGD 852
Cdd:NF038329 161 KGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 853 PGPPGLDVP-GPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGmmgppgppgplgipgRSGVPGLKGDDG 931
Cdd:NF038329 241 PGPTGEDGPqGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---------------KDGLPGKDGKDG 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462628163 932 LQGQPGLPGPTGEKGskgepglpgppgpmdpnLLGSKGEKGEPGLPGIPGVSGPK 986
Cdd:NF038329 306 QNGKDGLPGKDGKDG-----------------QPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
294-595 |
1.79e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 42.97 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 294 GEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGIT-IGEKGNIGLPGLP 372
Cdd:NF038329 165 GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgDGQQGPDGDPGPT 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 373 GEKGERGfpgiqgppglpgppgaavmgppgppgfpgergqkgdegppgisipgppgldgqpgapglpgppgpagphipps 452
Cdd:NF038329 245 GEDGPQG------------------------------------------------------------------------- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462628163 453 deicepgppgppgspgDKGLQGEQGVKGDKGDtcfncigtgisgppgqpglpglpgppgslgfPGQKGEKGQAGATGPKG 532
Cdd:NF038329 252 ----------------PDGPAGKDGPRGDRGE-------------------------------AGPDGPDGKDGERGPVG 284
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462628163 533 LPGIPGAPGAPGFPGSKGEPGDiltfPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPK 595
Cdd:NF038329 285 PAGKDGQNGKDGLPGKDGKDGQ----NGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1308-1354 |
2.75e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.47 E-value: 2.75e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2462628163 1308 GDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGP 1354
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGP 47
|
|
| |
