|
Name |
Accession |
Description |
Interval |
E-value |
| Ten_N super family |
cl24184 |
Teneurin Intracellular Region; This family is found in the intracellular N-terminal region of ... |
23-317 |
3.39e-79 |
|
Teneurin Intracellular Region; This family is found in the intracellular N-terminal region of the Teneurin family of proteins. These proteins are 'pair-rule' genes and are involved in tissue patterning, specifically probably neural patterning. The intracellular domain is cleaved in response to homophilic interaction of the extracellular domain, and translocates to the nucleus. Here it probably carries out to some transcriptional regulatory activity. The length of this region and the conservation suggests that there may be two structural domains here (personal obs:C Yeats).
The actual alignment was detected with superfamily member pfam06484:
Pssm-ID: 461932 [Multi-domain] Cd Length: 367 Bit Score: 267.23 E-value: 3.39e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 23 YTSSSDESEDGRKPRQ-SYNSRETLHEYNQELRMNYNSQSRK----------RKEVEKSTQEMEFCETSHTLCSGYQTDM 91
Cdd:pfam06484 13 YTSSSADSEECRVPTQkSYSSSETLKAFDHDSRMLYGNRVKDmvhkeadefsRQGQNFSLRELGICEPSPRHGLAYCTEM 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 92 hSVSRHGYQLEMGSDVDTETEGAASPDHALRMWIRGMKSEHSSCLSSRANSALSLTDTDHERKSDGENGFKFSPVCCDM- 170
Cdd:pfam06484 93 -GLPHRGYSISTGSDADTETDGPMSPEHAVRLWGRGTKSGRSSCLSSRSNSALTLTDTEHENKSDNENGPPIPPSSSSSs 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 171 -------------EAQAG------STQDVQSSPHNQFTFRPLPPPPPPPHACTCARKPP--------------------- 210
Cdd:pfam06484 172 pveqhsppppslnENQRPllgnnaSHPILDSDPDEEFSPNSYLVRTGSGPQSAPSEQPPnfqnhsrlrtpppplppphkq 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 211 -----PAADSLQRRSMTTRSQPS----PAAPAPPTSTQDSVHLHNSWVLNSNIPLETRHFLFKHGSGSSAIFSAASQNYP 281
Cdd:pfam06484 252 nqhhhPSINSLNRSSLTNRRNPSpaptASLPAELQSTQESVQLQDSWVLNSNVPLETRHFLFKTGTGTTPLFCTASPGYP 331
|
330 340 350
....*....|....*....|....*....|....*.
gi 2462627980 282 LTSNTVYSPPPRPLPRSTFSRPAFTFNKPYRCCNWK 317
Cdd:pfam06484 332 LTSGTVYSPPPRPLPRNTFSRPAFKLKKPYKYCSWK 367
|
|
| Tox-GHH |
pfam15636 |
GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH ... |
2681-2758 |
2.53e-34 |
|
GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH/Endonuclease VII fold present in bacterial polymorphic toxin systems with a characteriztic sG[HQ]H signature motif. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 6, type 7 or TcdB/TcaC-type secretion system. The metazoan teneurin proteins possess an inactive of this domain at their C-terminus.
:
Pssm-ID: 464783 Cd Length: 78 Bit Score: 126.96 E-value: 2.53e-34
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462627980 2681 EEKNHVLEIARQRAVAQAWTKEQRRLQEGEEGIRAWTEGEKQQLLSTGRVQGYDGYFVLSVEQYLELSDSANNIHFMR 2758
Cdd:pfam15636 1 EERKRLLEHAKKRAVREAWHRERQLLRNGLPGSRDWTDEEKEELLSTGSVPGYDGEYIHPVEQYPELADDPSNIRFRK 78
|
|
| NHL super family |
cl18310 |
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ... |
1168-1561 |
2.29e-32 |
|
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.
The actual alignment was detected with superfamily member cd14953:
Pssm-ID: 302697 [Multi-domain] Cd Length: 323 Bit Score: 129.96 E-value: 2.29e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1168 ISTIMGNGhqrsVACTNcNGPAHNNKLFAPVALASGPDGSVYVGDF--NFVRRIFPSGNSVSILELRNRDTRHSTSPAHK 1245
Cdd:cd14953 1 VSTVAGSG----TAGFS-GGGGTAARFNSPSGVAVDAAGNLYVADRgnHRIRKITPDGVVTTVAGTGTAGFADGGGAAAQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1246 YY----LAMDPvSESLYLSDTNTRKVYKLkslvetkDLSKNFEVVAGTGDQclpfdqsHCGDGGRASEASLNSPRDdssp 1321
Cdd:cd14953 76 FNtpsgVAVDA-AGNLYVADTGNHRIRKI-------TPDGVVSTLAGTGTA-------GFSDDGGATAAQFNYPTG---- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1322 rrsvivlmvdngllppehvtgdllkgqyrITVDRHGFIYFVDGT--MIRKIDENAVITTVIGsnglTSTQPLSCD-SGmd 1398
Cdd:cd14953 137 -----------------------------VAVDAAGNLYVADTGnhRIRKITPDGVVTTVAG----TGGAGYAGDgPA-- 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1399 iTQVRLEWPTDLAVNPMDNsLYVLD--NNIVLQISENRRVRIIAGRPIHCQVPGIDhflvskvAIHSTLESARAISVSHS 1476
Cdd:cd14953 182 -TAAQFNNPTGVAVDAAGN-LYVADrgNHRIRKITPDGVVTTVAGTGTAGFSGDGG-------ATAAQLNNPTGVAVDAA 252
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1477 GLLFIAETDErkvNRIQQVTTNGEIYIIAGAPTDcdckidpncdcFSGDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNV 1556
Cdd:cd14953 253 GNLYVADSGN---HRIRKITPAGVVTTVAGGGAG-----------FSGDGGPATSAQFNNPTGVAVDAAGNLYVADTGNN 318
|
....*
gi 2462627980 1557 RIRTI 1561
Cdd:cd14953 319 RIRKI 323
|
|
| RhsA |
COG3209 |
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ... |
1524-2457 |
1.12e-29 |
|
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];
:
Pssm-ID: 442442 [Multi-domain] Cd Length: 1103 Bit Score: 129.88 E-value: 1.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1524 GDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRNQAHLNDMNIYEIASPADQELYQFTVNGTHLHTLNLITRD 1603
Cdd:COG3209 119 VSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTGLAGGGASAYGLTLGGAAAGPATGVGTGAVTLATGLAGS 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1604 YVYNFTYNSEGDLGAITSSNGNSVHIRRDAGGMPLWLVVPGGQVYWLTISSNGVLKRVSAQGYNLALMTYPGNTGLLATK 1683
Cdd:COG3209 199 ALLALGSGAILGGLAGAYSGSATTATGTALGTPASVAATVTGSATGAAGAGAAVATAATTLGGTTGAGTGASGAGLDAST 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1684 SNENGWTTVYEYDPEGHLTNATFPTGEVSSFHSDLEKLTKVELDTSNRENVLMSTNLTATSTIYILKQENTQSTYRVNPD 1763
Cdd:COG3209 279 GTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAGTTGTAAVSGAADAGTTTTTGTGTGGTTTTVGGGGSLTLG 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1764 GSLRVTFASGMEIGLSSEPHILAGAVNPTLGKCNISLPGEHNANLIEWRQRKEQNKGNVSAFERRLRAHNRNLLSIDF-- 1841
Cdd:COG3209 359 GYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSSTTGVGAGTTTTSTTGGDGGPATAAGALTAGGTATGTGtg 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1842 DHITRTGKIYDDHRKFTLRILYDQTGRPILWSPVSRYNEVNITYSPSGLVTFIQRGTWNEkMEYDQSGKIISRTWADGKI 1921
Cdd:COG3209 439 GGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEAGTGGGTLTSGSAGATTLGT-DTTLDDTLGGTTTTTAGAR 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1922 WSYTYLEKSVMLLLHSQRRYIFEYDQPDCLLSVTMPSMVRHSLQTMLSVGYYRNIYTPPDSSTSFIQDYSRDGRLLQTLH 2001
Cdd:COG3209 518 GLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGTGTSTGTGGTGTVTTTGDGTGGASTTTGTTGGTATTTTVTTT 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2002 LGTGRRVLYKYTKQARLSEVLYDTTQVTLTYEESSGVIKTIHLMHDGFICTIRYRQTGPLIGRQIFRFSEEGLVNARFDY 2081
Cdd:COG3209 598 TTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATASTGSTTGGTTGTGVTTTGTTTTRATGTTGTGTGVTAGLTTLA 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2082 SYNNFRVTSMQAVINETPLPIDLYRYVDVSGRTEQFGKFSVINYDLNQVITTTVMKHTKIFSANGQVIEVQYEILKAIAY 2161
Cdd:COG3209 678 TGGTTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGTTTRLGTTTTGGGGGTTTDGTGTGGTTGTLTTTSTTTTTTAGA 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2162 WmTIQYDNVGRMVICDIRVGVDANITRYFYEYDADGQLQTVSVNDKTQWRYSYDLNGNINLLSHGKSARLTPL-----RY 2236
Cdd:COG3209 758 L-TYTYDALGRLTSETTPGGVTQGTYTTRYTYDALGRLTSVTYPDGETVTYTYDALGRLTSVITVGSGGGTDLqdrtyTY 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2237 DLRDRITRLgeiqykmdEDGFLRQRGNDIFEYNSNGLLQKAynKASGWTVQYYYDGLGRRVASKSSLGQHLQFFYADLtn 2316
Cdd:COG3209 837 DAAGNITSI--------TDALRAGTLTQTYTYDALGRLTSA--TDPGTTESYTYDANGNLTSRTDGGTTTYTYDALGR-- 904
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2317 PIRVTHlynhTSSEITSLYYDLQGHliamelssgeeyyvaCDNTGTPLAVFSSRGQVIKEILYTPYGDIYHDTYPDFQVI 2396
Cdd:COG3209 905 LVSVTK----PDGTTTTYTYDALGH---------------TDHLGSVRALTDASGQVVWRYDYDPFGNLLAETSGAAANP 965
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462627980 2397 IGFHGGLYDFLTKLVHLGQRDYDVVAGRWTTPNhhiwkqlnllpkP------FNLYSFENNYPVGKI 2457
Cdd:COG3209 966 LRFTGQEYDAETGLYYNGARYYDPALGRFLSPD------------PiglaggLNLYAYVGNNPVNYV 1020
|
|
| acid_disulf_rpt |
NF033662 |
acidic double-disulfide repeat; The acidic double-disulfide repeat is an Asp-rich repeat with ... |
803-828 |
2.46e-09 |
|
acidic double-disulfide repeat; The acidic double-disulfide repeat is an Asp-rich repeat with four nearly invariant Cys residues in a repeat length of about 35 amino acids.
:
Pssm-ID: 411265 [Multi-domain] Cd Length: 32 Bit Score: 54.44 E-value: 2.46e-09
10 20
....*....|....*....|....*.
gi 2462627980 803 CGDNLDNDGDGLTDCVDPDCCQQSNC 828
Cdd:NF033662 7 CSDGIDNDGDGLTDCADPDCAGNPVC 32
|
|
| DUF5885 super family |
cl44670 |
Family of unknown function (DUF5885); This is a family of uncharacterized proteins of unknown ... |
530-721 |
1.03e-06 |
|
Family of unknown function (DUF5885); This is a family of uncharacterized proteins of unknown function found in viruses.
The actual alignment was detected with superfamily member pfam19232:
Pssm-ID: 437064 Cd Length: 265 Bit Score: 52.70 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 530 DDCSTNCNGNGECISGHCH-----------------CFPGFLGPdcaRDSCpvlCGG----NGE----------YEKGHC 578
Cdd:pfam19232 10 DDCTPPCGGTQVCIDRQCKdntlacttdaqcgtcmtCVAGACTP---KASC---CGGvtcgAGQtcdaktntcvYVKGYC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 579 VCRHGW-KGPECDVPEEQCIDPTCFGHGT---CIMGV-----------------CICV------------PGYKGEICEE 625
Cdd:pfam19232 84 SADHPCpSGSACDTAKNACIAQPPYGPDSgkgCVRGFgawiweldpatnsgvwrCRCAngslynsahecsPLADQTLCAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 626 EDcLDPMC---------------SNHGICVK-------------GECHCSTGWGGVNCETplpvcQEQCSGHGTFLLDAG 677
Cdd:pfam19232 164 EN-LDPNAlvpassvpafaaygwGNQPVLINkstagaavpsplaGVCPCKPGWAGGSCTE-----DRTCNGRGTWNETTG 237
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2462627980 678 VCSCDPKWTGSDcstelctmECGSHGVCSRgicqceegWVGPTC 721
Cdd:pfam19232 238 QCACNIDFSGHN--------SCGDDNNCTS--------WTGPRC 265
|
|
| DSL super family |
cl19567 |
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain ... |
712-755 |
1.88e-04 |
|
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.
The actual alignment was detected with superfamily member pfam01414:
Pssm-ID: 473190 Cd Length: 46 Bit Score: 41.07 E-value: 1.88e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 2462627980 712 CEEGWVGPTCEeRSC--------HSHCTEHGQCkdgkcECSPGWEGDHCTIA 755
Cdd:pfam01414 1 CDENYYGSTCS-KFCrprddkfgHYTCDANGNK-----VCLPGWTGPYCDKP 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ten_N |
pfam06484 |
Teneurin Intracellular Region; This family is found in the intracellular N-terminal region of ... |
23-317 |
3.39e-79 |
|
Teneurin Intracellular Region; This family is found in the intracellular N-terminal region of the Teneurin family of proteins. These proteins are 'pair-rule' genes and are involved in tissue patterning, specifically probably neural patterning. The intracellular domain is cleaved in response to homophilic interaction of the extracellular domain, and translocates to the nucleus. Here it probably carries out to some transcriptional regulatory activity. The length of this region and the conservation suggests that there may be two structural domains here (personal obs:C Yeats).
Pssm-ID: 461932 [Multi-domain] Cd Length: 367 Bit Score: 267.23 E-value: 3.39e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 23 YTSSSDESEDGRKPRQ-SYNSRETLHEYNQELRMNYNSQSRK----------RKEVEKSTQEMEFCETSHTLCSGYQTDM 91
Cdd:pfam06484 13 YTSSSADSEECRVPTQkSYSSSETLKAFDHDSRMLYGNRVKDmvhkeadefsRQGQNFSLRELGICEPSPRHGLAYCTEM 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 92 hSVSRHGYQLEMGSDVDTETEGAASPDHALRMWIRGMKSEHSSCLSSRANSALSLTDTDHERKSDGENGFKFSPVCCDM- 170
Cdd:pfam06484 93 -GLPHRGYSISTGSDADTETDGPMSPEHAVRLWGRGTKSGRSSCLSSRSNSALTLTDTEHENKSDNENGPPIPPSSSSSs 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 171 -------------EAQAG------STQDVQSSPHNQFTFRPLPPPPPPPHACTCARKPP--------------------- 210
Cdd:pfam06484 172 pveqhsppppslnENQRPllgnnaSHPILDSDPDEEFSPNSYLVRTGSGPQSAPSEQPPnfqnhsrlrtpppplppphkq 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 211 -----PAADSLQRRSMTTRSQPS----PAAPAPPTSTQDSVHLHNSWVLNSNIPLETRHFLFKHGSGSSAIFSAASQNYP 281
Cdd:pfam06484 252 nqhhhPSINSLNRSSLTNRRNPSpaptASLPAELQSTQESVQLQDSWVLNSNVPLETRHFLFKTGTGTTPLFCTASPGYP 331
|
330 340 350
....*....|....*....|....*....|....*.
gi 2462627980 282 LTSNTVYSPPPRPLPRSTFSRPAFTFNKPYRCCNWK 317
Cdd:pfam06484 332 LTSGTVYSPPPRPLPRNTFSRPAFKLKKPYKYCSWK 367
|
|
| Tox-GHH |
pfam15636 |
GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH ... |
2681-2758 |
2.53e-34 |
|
GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH/Endonuclease VII fold present in bacterial polymorphic toxin systems with a characteriztic sG[HQ]H signature motif. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 6, type 7 or TcdB/TcaC-type secretion system. The metazoan teneurin proteins possess an inactive of this domain at their C-terminus.
Pssm-ID: 464783 Cd Length: 78 Bit Score: 126.96 E-value: 2.53e-34
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462627980 2681 EEKNHVLEIARQRAVAQAWTKEQRRLQEGEEGIRAWTEGEKQQLLSTGRVQGYDGYFVLSVEQYLELSDSANNIHFMR 2758
Cdd:pfam15636 1 EERKRLLEHAKKRAVREAWHRERQLLRNGLPGSRDWTDEEKEELLSTGSVPGYDGEYIHPVEQYPELADDPSNIRFRK 78
|
|
| NHL_like_1 |
cd14953 |
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat ... |
1168-1561 |
2.29e-32 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271323 [Multi-domain] Cd Length: 323 Bit Score: 129.96 E-value: 2.29e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1168 ISTIMGNGhqrsVACTNcNGPAHNNKLFAPVALASGPDGSVYVGDF--NFVRRIFPSGNSVSILELRNRDTRHSTSPAHK 1245
Cdd:cd14953 1 VSTVAGSG----TAGFS-GGGGTAARFNSPSGVAVDAAGNLYVADRgnHRIRKITPDGVVTTVAGTGTAGFADGGGAAAQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1246 YY----LAMDPvSESLYLSDTNTRKVYKLkslvetkDLSKNFEVVAGTGDQclpfdqsHCGDGGRASEASLNSPRDdssp 1321
Cdd:cd14953 76 FNtpsgVAVDA-AGNLYVADTGNHRIRKI-------TPDGVVSTLAGTGTA-------GFSDDGGATAAQFNYPTG---- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1322 rrsvivlmvdngllppehvtgdllkgqyrITVDRHGFIYFVDGT--MIRKIDENAVITTVIGsnglTSTQPLSCD-SGmd 1398
Cdd:cd14953 137 -----------------------------VAVDAAGNLYVADTGnhRIRKITPDGVVTTVAG----TGGAGYAGDgPA-- 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1399 iTQVRLEWPTDLAVNPMDNsLYVLD--NNIVLQISENRRVRIIAGRPIHCQVPGIDhflvskvAIHSTLESARAISVSHS 1476
Cdd:cd14953 182 -TAAQFNNPTGVAVDAAGN-LYVADrgNHRIRKITPDGVVTTVAGTGTAGFSGDGG-------ATAAQLNNPTGVAVDAA 252
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1477 GLLFIAETDErkvNRIQQVTTNGEIYIIAGAPTDcdckidpncdcFSGDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNV 1556
Cdd:cd14953 253 GNLYVADSGN---HRIRKITPAGVVTTVAGGGAG-----------FSGDGGPATSAQFNNPTGVAVDAAGNLYVADTGNN 318
|
....*
gi 2462627980 1557 RIRTI 1561
Cdd:cd14953 319 RIRKI 323
|
|
| RhsA |
COG3209 |
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ... |
1524-2457 |
1.12e-29 |
|
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];
Pssm-ID: 442442 [Multi-domain] Cd Length: 1103 Bit Score: 129.88 E-value: 1.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1524 GDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRNQAHLNDMNIYEIASPADQELYQFTVNGTHLHTLNLITRD 1603
Cdd:COG3209 119 VSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTGLAGGGASAYGLTLGGAAAGPATGVGTGAVTLATGLAGS 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1604 YVYNFTYNSEGDLGAITSSNGNSVHIRRDAGGMPLWLVVPGGQVYWLTISSNGVLKRVSAQGYNLALMTYPGNTGLLATK 1683
Cdd:COG3209 199 ALLALGSGAILGGLAGAYSGSATTATGTALGTPASVAATVTGSATGAAGAGAAVATAATTLGGTTGAGTGASGAGLDAST 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1684 SNENGWTTVYEYDPEGHLTNATFPTGEVSSFHSDLEKLTKVELDTSNRENVLMSTNLTATSTIYILKQENTQSTYRVNPD 1763
Cdd:COG3209 279 GTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAGTTGTAAVSGAADAGTTTTTGTGTGGTTTTVGGGGSLTLG 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1764 GSLRVTFASGMEIGLSSEPHILAGAVNPTLGKCNISLPGEHNANLIEWRQRKEQNKGNVSAFERRLRAHNRNLLSIDF-- 1841
Cdd:COG3209 359 GYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSSTTGVGAGTTTTSTTGGDGGPATAAGALTAGGTATGTGtg 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1842 DHITRTGKIYDDHRKFTLRILYDQTGRPILWSPVSRYNEVNITYSPSGLVTFIQRGTWNEkMEYDQSGKIISRTWADGKI 1921
Cdd:COG3209 439 GGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEAGTGGGTLTSGSAGATTLGT-DTTLDDTLGGTTTTTAGAR 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1922 WSYTYLEKSVMLLLHSQRRYIFEYDQPDCLLSVTMPSMVRHSLQTMLSVGYYRNIYTPPDSSTSFIQDYSRDGRLLQTLH 2001
Cdd:COG3209 518 GLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGTGTSTGTGGTGTVTTTGDGTGGASTTTGTTGGTATTTTVTTT 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2002 LGTGRRVLYKYTKQARLSEVLYDTTQVTLTYEESSGVIKTIHLMHDGFICTIRYRQTGPLIGRQIFRFSEEGLVNARFDY 2081
Cdd:COG3209 598 TTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATASTGSTTGGTTGTGVTTTGTTTTRATGTTGTGTGVTAGLTTLA 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2082 SYNNFRVTSMQAVINETPLPIDLYRYVDVSGRTEQFGKFSVINYDLNQVITTTVMKHTKIFSANGQVIEVQYEILKAIAY 2161
Cdd:COG3209 678 TGGTTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGTTTRLGTTTTGGGGGTTTDGTGTGGTTGTLTTTSTTTTTTAGA 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2162 WmTIQYDNVGRMVICDIRVGVDANITRYFYEYDADGQLQTVSVNDKTQWRYSYDLNGNINLLSHGKSARLTPL-----RY 2236
Cdd:COG3209 758 L-TYTYDALGRLTSETTPGGVTQGTYTTRYTYDALGRLTSVTYPDGETVTYTYDALGRLTSVITVGSGGGTDLqdrtyTY 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2237 DLRDRITRLgeiqykmdEDGFLRQRGNDIFEYNSNGLLQKAynKASGWTVQYYYDGLGRRVASKSSLGQHLQFFYADLtn 2316
Cdd:COG3209 837 DAAGNITSI--------TDALRAGTLTQTYTYDALGRLTSA--TDPGTTESYTYDANGNLTSRTDGGTTTYTYDALGR-- 904
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2317 PIRVTHlynhTSSEITSLYYDLQGHliamelssgeeyyvaCDNTGTPLAVFSSRGQVIKEILYTPYGDIYHDTYPDFQVI 2396
Cdd:COG3209 905 LVSVTK----PDGTTTTYTYDALGH---------------TDHLGSVRALTDASGQVVWRYDYDPFGNLLAETSGAAANP 965
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462627980 2397 IGFHGGLYDFLTKLVHLGQRDYDVVAGRWTTPNhhiwkqlnllpkP------FNLYSFENNYPVGKI 2457
Cdd:COG3209 966 LRFTGQEYDAETGLYYNGARYYDPALGRFLSPD------------PiglaggLNLYAYVGNNPVNYV 1020
|
|
| acid_disulf_rpt |
NF033662 |
acidic double-disulfide repeat; The acidic double-disulfide repeat is an Asp-rich repeat with ... |
803-828 |
2.46e-09 |
|
acidic double-disulfide repeat; The acidic double-disulfide repeat is an Asp-rich repeat with four nearly invariant Cys residues in a repeat length of about 35 amino acids.
Pssm-ID: 411265 [Multi-domain] Cd Length: 32 Bit Score: 54.44 E-value: 2.46e-09
10 20
....*....|....*....|....*.
gi 2462627980 803 CGDNLDNDGDGLTDCVDPDCCQQSNC 828
Cdd:NF033662 7 CSDGIDNDGDGLTDCADPDCAGNPVC 32
|
|
| DUF5885 |
pfam19232 |
Family of unknown function (DUF5885); This is a family of uncharacterized proteins of unknown ... |
530-721 |
1.03e-06 |
|
Family of unknown function (DUF5885); This is a family of uncharacterized proteins of unknown function found in viruses.
Pssm-ID: 437064 Cd Length: 265 Bit Score: 52.70 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 530 DDCSTNCNGNGECISGHCH-----------------CFPGFLGPdcaRDSCpvlCGG----NGE----------YEKGHC 578
Cdd:pfam19232 10 DDCTPPCGGTQVCIDRQCKdntlacttdaqcgtcmtCVAGACTP---KASC---CGGvtcgAGQtcdaktntcvYVKGYC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 579 VCRHGW-KGPECDVPEEQCIDPTCFGHGT---CIMGV-----------------CICV------------PGYKGEICEE 625
Cdd:pfam19232 84 SADHPCpSGSACDTAKNACIAQPPYGPDSgkgCVRGFgawiweldpatnsgvwrCRCAngslynsahecsPLADQTLCAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 626 EDcLDPMC---------------SNHGICVK-------------GECHCSTGWGGVNCETplpvcQEQCSGHGTFLLDAG 677
Cdd:pfam19232 164 EN-LDPNAlvpassvpafaaygwGNQPVLINkstagaavpsplaGVCPCKPGWAGGSCTE-----DRTCNGRGTWNETTG 237
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2462627980 678 VCSCDPKWTGSDcstelctmECGSHGVCSRgicqceegWVGPTC 721
Cdd:pfam19232 238 QCACNIDFSGHN--------SCGDDNNCTS--------WTGPRC 265
|
|
| Rhs_assc_core |
TIGR03696 |
RHS repeat-associated core domain; This model represents a conserved unique core sequence ... |
2379-2457 |
1.70e-05 |
|
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.
Pssm-ID: 274730 [Multi-domain] Cd Length: 77 Bit Score: 45.18 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2379 YTPYGDIYHDTYPDFQVIiGFHGGLYDFLTKLVHLGQRDYDVVAGRWTTPNhhiwkqlnllpkPF------NLYSFENNY 2452
Cdd:TIGR03696 1 YDPYGEVLSESGAAPNPL-RFTGQYYDAETGLYYNGARYYDPELGRFLSPD------------PIglggglNLYAYVGNN 67
|
....*
gi 2462627980 2453 PVGKI 2457
Cdd:TIGR03696 68 PVNWV 72
|
|
| RHS_core |
NF041261 |
RHS element core protein; |
1608-1725 |
3.63e-05 |
|
RHS element core protein;
Pssm-ID: 469161 [Multi-domain] Cd Length: 1261 Bit Score: 49.62 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1608 FTYNSEGDLGAITSSNGNSVHIRRDAGGMPLwlvvpggqvywltISSNGVLKRvsAQGYNLAlmtypgntGLLATKSNEN 1687
Cdd:NF041261 602 YEYNAAGDLTAVITPDGNRSETQYDAWGKAV-------------STTQGGLTR--SMEYDAA--------GRITTLTNEN 658
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462627980 1688 GWTTVYEYDPEGHLTNATFPTGEVSSFHSDLE-KLTKVE 1725
Cdd:NF041261 659 GSHSTFLYDALDRLVQQRGFDGRTQRYHYDLTgKLTQSE 697
|
|
| DSL |
pfam01414 |
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain ... |
712-755 |
1.88e-04 |
|
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.
Pssm-ID: 460202 Cd Length: 46 Bit Score: 41.07 E-value: 1.88e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 2462627980 712 CEEGWVGPTCEeRSC--------HSHCTEHGQCkdgkcECSPGWEGDHCTIA 755
Cdd:pfam01414 1 CDENYYGSTCS-KFCrprddkfgHYTCDANGNK-----VCLPGWTGPYCDKP 46
|
|
| C_rich_MXAN6577 |
NF041328 |
MXAN_6577-like cysteine-rich domain; |
652-795 |
2.26e-03 |
|
MXAN_6577-like cysteine-rich domain;
Pssm-ID: 469225 [Multi-domain] Cd Length: 145 Bit Score: 40.90 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 652 GVNCETPLPVCQEQCsghgtFLLDAgvcscDPkwtgSDCSTelCTMECGSHGVCSRGICQCEEGWV--GPTC-EERSCHS 728
Cdd:NF041328 18 GAVCPEGLSVCGGAC-----VDLRS-----DP----SNCGA--CGVACGAGQTCVAGACGCGPGTVacGGACvDTASDPA 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462627980 729 HCtehGQCkdGKCeCSPGW--EGDHCtiahyldavRDGCP-GLCFGNGRCT-LDQNGWHCvcqvGWSGTGC 795
Cdd:NF041328 82 HC---GAC--GAA-CAPGQvcEGGAC---------REACSeGLTRCGGACVdLATDPLHC----GACGVAC 133
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
1351-1561 |
3.95e-03 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 41.93 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1351 ITVDRHGFIYFVDGT--MIRKID-ENAVITTVIGSNGLTStqplscdsgmditqvrlewPTDLAVNPmDNSLYVLDNNiv 1427
Cdd:COG4257 64 IAVDPDGNLWFTDNGnnRIGRIDpKTGEITTFALPGGGSN-------------------PHGIAFDP-DGNLWFTDQG-- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1428 lqiseNRRVRII---AGRpihcqvpgidhflVSKVAIHSTLESARAISVSHSGLLFIAEtdeRKVNRIQqvttngeiyii 1504
Cdd:COG4257 122 -----GNRIGRLdpaTGE-------------VTEFPLPTGGAGPYGIAVDPDGNLWVTD---FGANAIG----------- 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462627980 1505 agaptdcdcKIDPncdcfsgDGG----YAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTI 1561
Cdd:COG4257 170 ---------RIDP-------DTGtlteYALPTPGAGPRGLAVDPDGNLWVADTGSGRIGRF 214
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ten_N |
pfam06484 |
Teneurin Intracellular Region; This family is found in the intracellular N-terminal region of ... |
23-317 |
3.39e-79 |
|
Teneurin Intracellular Region; This family is found in the intracellular N-terminal region of the Teneurin family of proteins. These proteins are 'pair-rule' genes and are involved in tissue patterning, specifically probably neural patterning. The intracellular domain is cleaved in response to homophilic interaction of the extracellular domain, and translocates to the nucleus. Here it probably carries out to some transcriptional regulatory activity. The length of this region and the conservation suggests that there may be two structural domains here (personal obs:C Yeats).
Pssm-ID: 461932 [Multi-domain] Cd Length: 367 Bit Score: 267.23 E-value: 3.39e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 23 YTSSSDESEDGRKPRQ-SYNSRETLHEYNQELRMNYNSQSRK----------RKEVEKSTQEMEFCETSHTLCSGYQTDM 91
Cdd:pfam06484 13 YTSSSADSEECRVPTQkSYSSSETLKAFDHDSRMLYGNRVKDmvhkeadefsRQGQNFSLRELGICEPSPRHGLAYCTEM 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 92 hSVSRHGYQLEMGSDVDTETEGAASPDHALRMWIRGMKSEHSSCLSSRANSALSLTDTDHERKSDGENGFKFSPVCCDM- 170
Cdd:pfam06484 93 -GLPHRGYSISTGSDADTETDGPMSPEHAVRLWGRGTKSGRSSCLSSRSNSALTLTDTEHENKSDNENGPPIPPSSSSSs 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 171 -------------EAQAG------STQDVQSSPHNQFTFRPLPPPPPPPHACTCARKPP--------------------- 210
Cdd:pfam06484 172 pveqhsppppslnENQRPllgnnaSHPILDSDPDEEFSPNSYLVRTGSGPQSAPSEQPPnfqnhsrlrtpppplppphkq 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 211 -----PAADSLQRRSMTTRSQPS----PAAPAPPTSTQDSVHLHNSWVLNSNIPLETRHFLFKHGSGSSAIFSAASQNYP 281
Cdd:pfam06484 252 nqhhhPSINSLNRSSLTNRRNPSpaptASLPAELQSTQESVQLQDSWVLNSNVPLETRHFLFKTGTGTTPLFCTASPGYP 331
|
330 340 350
....*....|....*....|....*....|....*.
gi 2462627980 282 LTSNTVYSPPPRPLPRSTFSRPAFTFNKPYRCCNWK 317
Cdd:pfam06484 332 LTSGTVYSPPPRPLPRNTFSRPAFKLKKPYKYCSWK 367
|
|
| Tox-GHH |
pfam15636 |
GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH ... |
2681-2758 |
2.53e-34 |
|
GHH signature containing HNH/Endo VII superfamily nuclease toxin; A predicted toxin of the HNH/Endonuclease VII fold present in bacterial polymorphic toxin systems with a characteriztic sG[HQ]H signature motif. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 6, type 7 or TcdB/TcaC-type secretion system. The metazoan teneurin proteins possess an inactive of this domain at their C-terminus.
Pssm-ID: 464783 Cd Length: 78 Bit Score: 126.96 E-value: 2.53e-34
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462627980 2681 EEKNHVLEIARQRAVAQAWTKEQRRLQEGEEGIRAWTEGEKQQLLSTGRVQGYDGYFVLSVEQYLELSDSANNIHFMR 2758
Cdd:pfam15636 1 EERKRLLEHAKKRAVREAWHRERQLLRNGLPGSRDWTDEEKEELLSTGSVPGYDGEYIHPVEQYPELADDPSNIRFRK 78
|
|
| NHL_like_1 |
cd14953 |
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat ... |
1168-1561 |
2.29e-32 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271323 [Multi-domain] Cd Length: 323 Bit Score: 129.96 E-value: 2.29e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1168 ISTIMGNGhqrsVACTNcNGPAHNNKLFAPVALASGPDGSVYVGDF--NFVRRIFPSGNSVSILELRNRDTRHSTSPAHK 1245
Cdd:cd14953 1 VSTVAGSG----TAGFS-GGGGTAARFNSPSGVAVDAAGNLYVADRgnHRIRKITPDGVVTTVAGTGTAGFADGGGAAAQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1246 YY----LAMDPvSESLYLSDTNTRKVYKLkslvetkDLSKNFEVVAGTGDQclpfdqsHCGDGGRASEASLNSPRDdssp 1321
Cdd:cd14953 76 FNtpsgVAVDA-AGNLYVADTGNHRIRKI-------TPDGVVSTLAGTGTA-------GFSDDGGATAAQFNYPTG---- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1322 rrsvivlmvdngllppehvtgdllkgqyrITVDRHGFIYFVDGT--MIRKIDENAVITTVIGsnglTSTQPLSCD-SGmd 1398
Cdd:cd14953 137 -----------------------------VAVDAAGNLYVADTGnhRIRKITPDGVVTTVAG----TGGAGYAGDgPA-- 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1399 iTQVRLEWPTDLAVNPMDNsLYVLD--NNIVLQISENRRVRIIAGRPIHCQVPGIDhflvskvAIHSTLESARAISVSHS 1476
Cdd:cd14953 182 -TAAQFNNPTGVAVDAAGN-LYVADrgNHRIRKITPDGVVTTVAGTGTAGFSGDGG-------ATAAQLNNPTGVAVDAA 252
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1477 GLLFIAETDErkvNRIQQVTTNGEIYIIAGAPTDcdckidpncdcFSGDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNV 1556
Cdd:cd14953 253 GNLYVADSGN---HRIRKITPAGVVTTVAGGGAG-----------FSGDGGPATSAQFNNPTGVAVDAAGNLYVADTGNN 318
|
....*
gi 2462627980 1557 RIRTI 1561
Cdd:cd14953 319 RIRKI 323
|
|
| RhsA |
COG3209 |
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ... |
1524-2457 |
1.12e-29 |
|
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];
Pssm-ID: 442442 [Multi-domain] Cd Length: 1103 Bit Score: 129.88 E-value: 1.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1524 GDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRNQAHLNDMNIYEIASPADQELYQFTVNGTHLHTLNLITRD 1603
Cdd:COG3209 119 VSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTGLAGGGASAYGLTLGGAAAGPATGVGTGAVTLATGLAGS 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1604 YVYNFTYNSEGDLGAITSSNGNSVHIRRDAGGMPLWLVVPGGQVYWLTISSNGVLKRVSAQGYNLALMTYPGNTGLLATK 1683
Cdd:COG3209 199 ALLALGSGAILGGLAGAYSGSATTATGTALGTPASVAATVTGSATGAAGAGAAVATAATTLGGTTGAGTGASGAGLDAST 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1684 SNENGWTTVYEYDPEGHLTNATFPTGEVSSFHSDLEKLTKVELDTSNRENVLMSTNLTATSTIYILKQENTQSTYRVNPD 1763
Cdd:COG3209 279 GTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAGTTGTAAVSGAADAGTTTTTGTGTGGTTTTVGGGGSLTLG 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1764 GSLRVTFASGMEIGLSSEPHILAGAVNPTLGKCNISLPGEHNANLIEWRQRKEQNKGNVSAFERRLRAHNRNLLSIDF-- 1841
Cdd:COG3209 359 GYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSSTTGVGAGTTTTSTTGGDGGPATAAGALTAGGTATGTGtg 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1842 DHITRTGKIYDDHRKFTLRILYDQTGRPILWSPVSRYNEVNITYSPSGLVTFIQRGTWNEkMEYDQSGKIISRTWADGKI 1921
Cdd:COG3209 439 GGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEAGTGGGTLTSGSAGATTLGT-DTTLDDTLGGTTTTTAGAR 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1922 WSYTYLEKSVMLLLHSQRRYIFEYDQPDCLLSVTMPSMVRHSLQTMLSVGYYRNIYTPPDSSTSFIQDYSRDGRLLQTLH 2001
Cdd:COG3209 518 GLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGTGTSTGTGGTGTVTTTGDGTGGASTTTGTTGGTATTTTVTTT 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2002 LGTGRRVLYKYTKQARLSEVLYDTTQVTLTYEESSGVIKTIHLMHDGFICTIRYRQTGPLIGRQIFRFSEEGLVNARFDY 2081
Cdd:COG3209 598 TTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATASTGSTTGGTTGTGVTTTGTTTTRATGTTGTGTGVTAGLTTLA 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2082 SYNNFRVTSMQAVINETPLPIDLYRYVDVSGRTEQFGKFSVINYDLNQVITTTVMKHTKIFSANGQVIEVQYEILKAIAY 2161
Cdd:COG3209 678 TGGTTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGTTTRLGTTTTGGGGGTTTDGTGTGGTTGTLTTTSTTTTTTAGA 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2162 WmTIQYDNVGRMVICDIRVGVDANITRYFYEYDADGQLQTVSVNDKTQWRYSYDLNGNINLLSHGKSARLTPL-----RY 2236
Cdd:COG3209 758 L-TYTYDALGRLTSETTPGGVTQGTYTTRYTYDALGRLTSVTYPDGETVTYTYDALGRLTSVITVGSGGGTDLqdrtyTY 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2237 DLRDRITRLgeiqykmdEDGFLRQRGNDIFEYNSNGLLQKAynKASGWTVQYYYDGLGRRVASKSSLGQHLQFFYADLtn 2316
Cdd:COG3209 837 DAAGNITSI--------TDALRAGTLTQTYTYDALGRLTSA--TDPGTTESYTYDANGNLTSRTDGGTTTYTYDALGR-- 904
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2317 PIRVTHlynhTSSEITSLYYDLQGHliamelssgeeyyvaCDNTGTPLAVFSSRGQVIKEILYTPYGDIYHDTYPDFQVI 2396
Cdd:COG3209 905 LVSVTK----PDGTTTTYTYDALGH---------------TDHLGSVRALTDASGQVVWRYDYDPFGNLLAETSGAAANP 965
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462627980 2397 IGFHGGLYDFLTKLVHLGQRDYDVVAGRWTTPNhhiwkqlnllpkP------FNLYSFENNYPVGKI 2457
Cdd:COG3209 966 LRFTGQEYDAETGLYYNGARYYDPALGRFLSPD------------PiglaggLNLYAYVGNNPVNYV 1020
|
|
| NHL_like_1 |
cd14953 |
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat ... |
1248-1564 |
1.48e-26 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271323 [Multi-domain] Cd Length: 323 Bit Score: 113.01 E-value: 1.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1248 LAMDPvSESLYLSDTNTRKVYKL--KSLVETkdlsknfevVAGTGDQclpfdqshcG-DGGRASEASLNSPRDdssprrs 1324
Cdd:cd14953 28 VAVDA-AGNLYVADRGNHRIRKItpDGVVTT---------VAGTGTA---------GfADGGGAAAQFNTPSG------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1325 vivlmvdngllppehvtgdllkgqyrITVDRHGFIYFVDGT--MIRKIDENAVITTVIGsnglTSTQPLSCDSGMdiTQV 1402
Cdd:cd14953 82 --------------------------VAVDAAGNLYVADTGnhRIRKITPDGVVSTLAG----TGTAGFSDDGGA--TAA 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1403 RLEWPTDLAVNPMDNsLYVLD--NNIVLQISENRRVRIIAGRPihcqVPGidhFLVSKVAIHSTLESARAISVSHSGLLF 1480
Cdd:cd14953 130 QFNYPTGVAVDAAGN-LYVADtgNHRIRKITPDGVVTTVAGTG----GAG---YAGDGPATAAQFNNPTGVAVDAAGNLY 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1481 IAETDErkvNRIQQVTTNGEIYIIAGAPTDCdckidpncdcFSGDGGyAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRT 1560
Cdd:cd14953 202 VADRGN---HRIRKITPDGVVTTVAGTGTAG----------FSGDGG-ATAAQLNNPTGVAVDAAGNLYVADSGNHRIRK 267
|
....
gi 2462627980 1561 ISRN 1564
Cdd:cd14953 268 ITPA 271
|
|
| NHL_like_1 |
cd14953 |
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat ... |
1349-1562 |
5.75e-23 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271323 [Multi-domain] Cd Length: 323 Bit Score: 102.61 E-value: 5.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1349 YRITVDRHGFIYFVDGT--MIRKIDENAVITTVIGsnglTSTQPLSCDSGmdiTQVRLEWPTDLAVNPMDNsLYVLD--N 1424
Cdd:cd14953 26 SGVAVDAAGNLYVADRGnhRIRKITPDGVVTTVAG----TGTAGFADGGG---AAAQFNTPSGVAVDAAGN-LYVADtgN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1425 NIVLQISENRRVRIIAGRpihcqvpGIDHFLVSKVAIHSTLESARAISVSHSGLLFIAETderKVNRIQQVTTNGEIYII 1504
Cdd:cd14953 98 HRIRKITPDGVVSTLAGT-------GTAGFSDDGGATAAQFNYPTGVAVDAAGNLYVADT---GNHRIRKITPDGVVTTV 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462627980 1505 AGAPTDcdckidpncdcFSGDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTIS 1562
Cdd:cd14953 168 AGTGGA-----------GYAGDGPATAAQFNNPTGVAVDAAGNLYVADRGNHRIRKIT 214
|
|
| NHL |
cd05819 |
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ... |
1191-1561 |
4.24e-16 |
|
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.
Pssm-ID: 271320 [Multi-domain] Cd Length: 269 Bit Score: 80.83 E-value: 4.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1191 NNKLFAPVALASGPDGSVYVGDF--NFVRRIFPSGNSVSILELRNRDTRHSTSPAHkyyLAMDPvSESLYLSDTNTRKVY 1268
Cdd:cd05819 4 PGELNNPQGIAVDSSGNIYVADTgnNRIQVFDPDGNFITSFGSFGSGDGQFNEPAG---VAVDS-DGNLYVADTGNHRIQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1269 KLkslvetkDLSKNFEVVAGTGDQclpfdqshcGDGGraseasLNSPRDdssprrsvivlmvdngllppehvtgdllkgq 1348
Cdd:cd05819 80 KF-------DPDGNFLASFGGSGD---------GDGE------FNGPRG------------------------------- 106
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1349 yrITVDRHGFIYFVDgTM---IRKIDENAVITTVIGSNGLTSTQplscdsgmditqvrLEWPTDLAVNPmDNSLYVLDnn 1425
Cdd:cd05819 107 --IAVDSSGNIYVAD-TGnhrIQKFDPDGEFLTTFGSGGSGPGQ--------------FNGPTGVAVDS-DGNIYVAD-- 166
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1426 ivlqiSENRRVRIIA--GRPIhcqvpgidhFLV-SKVAIHSTLESARAISVSHSGLLFIAETDErkvNRIQqvttngeiy 1502
Cdd:cd05819 167 -----TGNHRIQVFDpdGNFL---------TTFgSTGTGPGQFNYPTGIAVDSDGNIYVADSGN---NRVQ--------- 220
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1503 iiagaptdcdcKIDPNCDCFSGDGGYA-KDAKMKAPSSLAVSPDGTLYVADLGNVRIRTI 1561
Cdd:cd05819 221 -----------VFDPDGAGFGGNGNFLgSDGQFNRPSGLAVDSDGNLYVADTGNNRIQVF 269
|
|
| NHL |
cd05819 |
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ... |
1351-1569 |
5.62e-16 |
|
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.
Pssm-ID: 271320 [Multi-domain] Cd Length: 269 Bit Score: 80.83 E-value: 5.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1351 ITVDRHGFIYFVDGTM--IRKIDENAVITTVIGSNGLTSTQplscdsgmditqvrLEWPTDLAVNPmDNSLYVLDnnivl 1428
Cdd:cd05819 13 IAVDSSGNIYVADTGNnrIQVFDPDGNFITSFGSFGSGDGQ--------------FNEPAGVAVDS-DGNLYVAD----- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1429 qiSENRRVRII--AGRPI-HCQVPGIDhflvskvaiHSTLESARAISVSHSGLLFIAETDErkvNRIQQVTTNGEIYIIA 1505
Cdd:cd05819 73 --TGNHRIQKFdpDGNFLaSFGGSGDG---------DGEFNGPRGIAVDSSGNIYVADTGN---HRIQKFDPDGEFLTTF 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1506 GAPTDCDCK--------IDPN-----CDC-------FSGDGGY--------AKDAKMKAPSSLAVSPDGTLYVADLGNVR 1557
Cdd:cd05819 139 GSGGSGPGQfngptgvaVDSDgniyvADTgnhriqvFDPDGNFlttfgstgTGPGQFNYPTGIAVDSDGNIYVADSGNNR 218
|
250
....*....|..
gi 2462627980 1558 IRTISRNQAHLN 1569
Cdd:cd05819 219 VQVFDPDGAGFG 230
|
|
| NHL_like_1 |
cd14953 |
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat ... |
1167-1430 |
2.44e-11 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271323 [Multi-domain] Cd Length: 323 Bit Score: 67.56 E-value: 2.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1167 VISTIMGNGhqrSVACTNCNGPAhNNKLFAPVALASGPDGSVYVGDF--NFVRRIFPSGnSVSIL---ELRNRDTRHSTS 1241
Cdd:cd14953 108 VVSTLAGTG---TAGFSDDGGAT-AAQFNYPTGVAVDAAGNLYVADTgnHRIRKITPDG-VVTTVagtGGAGYAGDGPAT 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1242 PAHKYY---LAMDPvSESLYLSDTNTRKVYKLKS--LVETkdlsknfevVAGTGDQclPFdqshcGDGGRASEASLNSPR 1316
Cdd:cd14953 183 AAQFNNptgVAVDA-AGNLYVADRGNHRIRKITPdgVVTT---------VAGTGTA--GF-----SGDGGATAAQLNNPT 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1317 DdssprrsvivlmvdngllppehvtgdllkgqyrITVDRHGFIYFVD---GTmIRKIDENAVITTVIGSnglTSTQPLSC 1393
Cdd:cd14953 246 G---------------------------------VAVDAAGNLYVADsgnHR-IRKITPAGVVTTVAGG---GAGFSGDG 288
|
250 260 270
....*....|....*....|....*....|....*....
gi 2462627980 1394 DSGmdiTQVRLEWPTDLAVNPmDNSLYVLD--NNIVLQI 1430
Cdd:cd14953 289 GPA---TSAQFNNPTGVAVDA-AGNLYVADtgNNRIRKI 323
|
|
| acid_disulf_rpt |
NF033662 |
acidic double-disulfide repeat; The acidic double-disulfide repeat is an Asp-rich repeat with ... |
803-828 |
2.46e-09 |
|
acidic double-disulfide repeat; The acidic double-disulfide repeat is an Asp-rich repeat with four nearly invariant Cys residues in a repeat length of about 35 amino acids.
Pssm-ID: 411265 [Multi-domain] Cd Length: 32 Bit Score: 54.44 E-value: 2.46e-09
10 20
....*....|....*....|....*.
gi 2462627980 803 CGDNLDNDGDGLTDCVDPDCCQQSNC 828
Cdd:NF033662 7 CSDGIDNDGDGLTDCADPDCAGNPVC 32
|
|
| NHL_like_3 |
cd14956 |
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ... |
1351-1558 |
2.54e-07 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271326 [Multi-domain] Cd Length: 274 Bit Score: 54.60 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1351 ITVDRHGFIYFVD--GTMIRKIDENaviTTVIGSNGLTSTQPLScdsgmditqvrLEWPTDLAVNPmDNSLYVLDnnivl 1428
Cdd:cd14956 112 VAVDADGNLYVADfgNQRIQKFDPD---GSFLRQWGGTGIEPGS-----------FNYPRGVAVDP-DGTLYVAD----- 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1429 qiSENRRVriiagrpihcQVPGIDHFLVSKVAIHST----LESARAISVSHSGLLFIAETDErkvNRIQQVTTNGEIYII 1504
Cdd:cd14956 172 --TYNDRI----------QVFDNDGAFLRKWGGRGTgpgqFNYPYGIAIDPDGNVFVADFGN---NRIQKFTADGTFLTS 236
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462627980 1505 AGAPTdcdckidpncdcfSGDGgyakdaKMKAPSSLAVSPDGTLYVADLGNVRI 1558
Cdd:cd14956 237 WGSPG-------------TGPG------QFKNPWGVVVDADGTVYVADSNNNRV 271
|
|
| NHL_like_3 |
cd14956 |
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ... |
1350-1558 |
4.88e-07 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271326 [Multi-domain] Cd Length: 274 Bit Score: 53.83 E-value: 4.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1350 RITVDRHGFIYFVDGT--MIRKIDENAVITTVIGSNGLTSTQplscdsgmditqvrLEWPTDLAVNPmDNSLYVLD--NN 1425
Cdd:cd14956 64 GLAVDKDGWLYVADYWgdRIQVFTLTGELQTIGGSSGSGPGQ--------------FNAPRGVAVDA-DGNLYVADfgNQ 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1426 IVLQISENRR-VRIIAGRPIHcqvPGidHFLvskvaihstleSARAISVSHSGLLFIAETderKVNRIQQVTTNGEIYII 1504
Cdd:cd14956 129 RIQKFDPDGSfLRQWGGTGIE---PG--SFN-----------YPRGVAVDPDGTLYVADT---YNDRIQVFDNDGAFLRK 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462627980 1505 AGAPtdcdckidpncdcFSGDGgyakdaKMKAPSSLAVSPDGTLYVADLGNVRI 1558
Cdd:cd14956 190 WGGR-------------GTGPG------QFNYPYGIAIDPDGNVFVADFGNNRI 224
|
|
| DUF5885 |
pfam19232 |
Family of unknown function (DUF5885); This is a family of uncharacterized proteins of unknown ... |
530-721 |
1.03e-06 |
|
Family of unknown function (DUF5885); This is a family of uncharacterized proteins of unknown function found in viruses.
Pssm-ID: 437064 Cd Length: 265 Bit Score: 52.70 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 530 DDCSTNCNGNGECISGHCH-----------------CFPGFLGPdcaRDSCpvlCGG----NGE----------YEKGHC 578
Cdd:pfam19232 10 DDCTPPCGGTQVCIDRQCKdntlacttdaqcgtcmtCVAGACTP---KASC---CGGvtcgAGQtcdaktntcvYVKGYC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 579 VCRHGW-KGPECDVPEEQCIDPTCFGHGT---CIMGV-----------------CICV------------PGYKGEICEE 625
Cdd:pfam19232 84 SADHPCpSGSACDTAKNACIAQPPYGPDSgkgCVRGFgawiweldpatnsgvwrCRCAngslynsahecsPLADQTLCAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 626 EDcLDPMC---------------SNHGICVK-------------GECHCSTGWGGVNCETplpvcQEQCSGHGTFLLDAG 677
Cdd:pfam19232 164 EN-LDPNAlvpassvpafaaygwGNQPVLINkstagaavpsplaGVCPCKPGWAGGSCTE-----DRTCNGRGTWNETTG 237
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2462627980 678 VCSCDPKWTGSDcstelctmECGSHGVCSRgicqceegWVGPTC 721
Cdd:pfam19232 238 QCACNIDFSGHN--------SCGDDNNCTS--------WTGPRC 265
|
|
| NHL |
cd05819 |
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ... |
1469-1564 |
1.96e-06 |
|
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.
Pssm-ID: 271320 [Multi-domain] Cd Length: 269 Bit Score: 51.94 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1469 RAISVSHSGLLFIAETDErkvNRIQQVTTNGEIYIIAGAptdcdckidpncdcfSGDGgyakDAKMKAPSSLAVSPDGTL 1548
Cdd:cd05819 11 QGIAVDSSGNIYVADTGN---NRIQVFDPDGNFITSFGS---------------FGSG----DGQFNEPAGVAVDSDGNL 68
|
90
....*....|....*.
gi 2462627980 1549 YVADLGNVRIRTISRN 1564
Cdd:cd05819 69 YVADTGNHRIQKFDPD 84
|
|
| NHL_TRIM71_like |
cd14954 |
NHL repeat domain of the tripartite motif-containing protein 71 (TRIM71) and related proteins; ... |
1403-1558 |
9.87e-06 |
|
NHL repeat domain of the tripartite motif-containing protein 71 (TRIM71) and related proteins; The E3 ubiquitin-protein ligase TRIM71 (LIN-41) is a RING-finger domain containing protein that has been associated with a variety of activities. The NHL repeat domain appears responsible for targeting TRIM71 to mRNAs, and TRIM71 appears responsible for translational repression and mRNA decay. Together with BRAT, TRIM71 may be part of a family of mRNA repressors that regulate proliferation and differentiation. TRIM has been shown to negatively regulate stability of Lin28B, which inhibits the pre-let-7 miRNA precursor from maturing by recruiting the terminal uriyltransferase TUT4. This family also contains the Caenorhabditis elegans NHL repeat containing 1 (NHL-1), a RING-finger-containing protein that was shown to interact with E2 ubiquitin conjugating enzymes in two-hybrid screens. Its domain architecture resembles that of the E3 ubiquitin protein ligases TRIM2, TRIM32, and TRIM71. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271324 [Multi-domain] Cd Length: 285 Bit Score: 49.85 E-value: 9.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1403 RLEWPTDLAVNPMDNsLYVLDnnivlqiSENRRVRIIA--GRPIH---CQVPGIDHFlvskvaihstlESARAISVSHSG 1477
Cdd:cd14954 116 QFNYPWGVAVDSEGR-IYVSD-------TRNHRVQVFDsdGQFIRkfgFEGAGPGQL-----------DSPRGVAVNPDG 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1478 LLFIAETDERKV-----------------------NRIQQVTTNGEIYIIAgaptdCDCKiDPNCDCFSGDGGYAK---- 1530
Cdd:cd14954 177 NIVVSDFNNHRLqvfdpdgqflrffgsegsgngqfKRPRGVAVDDEGNIIV-----ADSG-NHRVQVFSPDGEFLCsfgt 250
|
170 180 190
....*....|....*....|....*....|..
gi 2462627980 1531 ----DAKMKAPSSLAVSPDGTLYVADLGNVRI 1558
Cdd:cd14954 251 egngEGQFDRPSGVAVTPDGRIVVVDRGNHRI 282
|
|
| Rhs_assc_core |
TIGR03696 |
RHS repeat-associated core domain; This model represents a conserved unique core sequence ... |
2379-2457 |
1.70e-05 |
|
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.
Pssm-ID: 274730 [Multi-domain] Cd Length: 77 Bit Score: 45.18 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 2379 YTPYGDIYHDTYPDFQVIiGFHGGLYDFLTKLVHLGQRDYDVVAGRWTTPNhhiwkqlnllpkPF------NLYSFENNY 2452
Cdd:TIGR03696 1 YDPYGEVLSESGAAPNPL-RFTGQYYDAETGLYYNGARYYDPELGRFLSPD------------PIglggglNLYAYVGNN 67
|
....*
gi 2462627980 2453 PVGKI 2457
Cdd:TIGR03696 68 PVNWV 72
|
|
| YD_repeat_2x |
TIGR01643 |
YD repeat (two copies); This model describes two tandem copies of a 21-residue extracellular ... |
1885-1925 |
2.36e-05 |
|
YD repeat (two copies); This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Pssm-ID: 273728 [Multi-domain] Cd Length: 42 Bit Score: 43.35 E-value: 2.36e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2462627980 1885 YSPSG-LVTFIQRGTWNEKMEYDQSGKIISRTWADGKIWSYT 1925
Cdd:TIGR01643 1 YDAAGrLTGSTDADGTTTRYTYDAAGRLVEITDADGGSTRYE 42
|
|
| RHS_core |
NF041261 |
RHS element core protein; |
1608-1725 |
3.63e-05 |
|
RHS element core protein;
Pssm-ID: 469161 [Multi-domain] Cd Length: 1261 Bit Score: 49.62 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1608 FTYNSEGDLGAITSSNGNSVHIRRDAGGMPLwlvvpggqvywltISSNGVLKRvsAQGYNLAlmtypgntGLLATKSNEN 1687
Cdd:NF041261 602 YEYNAAGDLTAVITPDGNRSETQYDAWGKAV-------------STTQGGLTR--SMEYDAA--------GRITTLTNEN 658
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462627980 1688 GWTTVYEYDPEGHLTNATFPTGEVSSFHSDLE-KLTKVE 1725
Cdd:NF041261 659 GSHSTFLYDALDRLVQQRGFDGRTQRYHYDLTgKLTQSE 697
|
|
| NHL_like_1 |
cd14953 |
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat ... |
1522-1564 |
4.70e-05 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271323 [Multi-domain] Cd Length: 323 Bit Score: 48.30 E-value: 4.70e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2462627980 1522 FSGDGGyaKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRN 1564
Cdd:cd14953 12 FSGGGG--TAARFNSPSGVAVDAAGNLYVADRGNHRIRKITPD 52
|
|
| DSL |
pfam01414 |
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain ... |
712-755 |
1.88e-04 |
|
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.
Pssm-ID: 460202 Cd Length: 46 Bit Score: 41.07 E-value: 1.88e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 2462627980 712 CEEGWVGPTCEeRSC--------HSHCTEHGQCkdgkcECSPGWEGDHCTIA 755
Cdd:pfam01414 1 CDENYYGSTCS-KFCrprddkfgHYTCDANGNK-----VCLPGWTGPYCDKP 46
|
|
| NHL_like_3 |
cd14956 |
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ... |
1407-1560 |
6.33e-04 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271326 [Multi-domain] Cd Length: 274 Bit Score: 44.20 E-value: 6.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1407 PTDLAVNPMDNSLYVLDNNIVLQI--SENRRVRIIAGRPihcqvPGIDHFlvskvaihstlESARAISVSHSGLLFIAET 1484
Cdd:cd14956 15 PRGIAVDADDNVYVADARNGRIQVfdKDGTFLRRFGTTG-----DGPGQF-----------GRPRGLAVDKDGWLYVADY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1485 DErkvNRIQQVTTNGEIYIIAG----------APTDCDCKIDPN---CDC-------FSGDGGYAKD--------AKMKA 1536
Cdd:cd14956 79 WG---DRIQVFTLTGELQTIGGssgsgpgqfnAPRGVAVDADGNlyvADFgnqriqkFDPDGSFLRQwggtgiepGSFNY 155
|
170 180
....*....|....*....|....
gi 2462627980 1537 PSSLAVSPDGTLYVADLGNVRIRT 1560
Cdd:cd14956 156 PRGVAVDPDGTLYVADTYNDRIQV 179
|
|
| EGF_2 |
pfam07974 |
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins. |
730-752 |
1.63e-03 |
|
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.
Pssm-ID: 400365 Cd Length: 26 Bit Score: 38.10 E-value: 1.63e-03
|
| EGF_2 |
pfam07974 |
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins. |
698-721 |
1.88e-03 |
|
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.
Pssm-ID: 400365 Cd Length: 26 Bit Score: 37.71 E-value: 1.88e-03
|
| C_rich_MXAN6577 |
NF041328 |
MXAN_6577-like cysteine-rich domain; |
652-795 |
2.26e-03 |
|
MXAN_6577-like cysteine-rich domain;
Pssm-ID: 469225 [Multi-domain] Cd Length: 145 Bit Score: 40.90 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 652 GVNCETPLPVCQEQCsghgtFLLDAgvcscDPkwtgSDCSTelCTMECGSHGVCSRGICQCEEGWV--GPTC-EERSCHS 728
Cdd:NF041328 18 GAVCPEGLSVCGGAC-----VDLRS-----DP----SNCGA--CGVACGAGQTCVAGACGCGPGTVacGGACvDTASDPA 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462627980 729 HCtehGQCkdGKCeCSPGW--EGDHCtiahyldavRDGCP-GLCFGNGRCT-LDQNGWHCvcqvGWSGTGC 795
Cdd:NF041328 82 HC---GAC--GAA-CAPGQvcEGGAC---------REACSeGLTRCGGACVdLATDPLHC----GACGVAC 133
|
|
| EGF_2 |
pfam07974 |
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins. |
536-558 |
3.43e-03 |
|
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.
Pssm-ID: 400365 Cd Length: 26 Bit Score: 36.94 E-value: 3.43e-03
|
| NHL |
cd05819 |
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ... |
1530-1564 |
3.49e-03 |
|
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.
Pssm-ID: 271320 [Multi-domain] Cd Length: 269 Bit Score: 41.92 E-value: 3.49e-03
10 20 30
....*....|....*....|....*....|....*
gi 2462627980 1530 KDAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRN 1564
Cdd:cd05819 3 GPGELNNPQGIAVDSSGNIYVADTGNNRIQVFDPD 37
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
1351-1561 |
3.95e-03 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 41.93 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1351 ITVDRHGFIYFVDGT--MIRKID-ENAVITTVIGSNGLTStqplscdsgmditqvrlewPTDLAVNPmDNSLYVLDNNiv 1427
Cdd:COG4257 64 IAVDPDGNLWFTDNGnnRIGRIDpKTGEITTFALPGGGSN-------------------PHGIAFDP-DGNLWFTDQG-- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1428 lqiseNRRVRII---AGRpihcqvpgidhflVSKVAIHSTLESARAISVSHSGLLFIAEtdeRKVNRIQqvttngeiyii 1504
Cdd:COG4257 122 -----GNRIGRLdpaTGE-------------VTEFPLPTGGAGPYGIAVDPDGNLWVTD---FGANAIG----------- 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462627980 1505 agaptdcdcKIDPncdcfsgDGG----YAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTI 1561
Cdd:COG4257 170 ---------RIDP-------DTGtlteYALPTPGAGPRGLAVDPDGNLWVADTGSGRIGRF 214
|
|
| Keratin_B2 |
pfam01500 |
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ... |
596-732 |
4.26e-03 |
|
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.
Pssm-ID: 366678 [Multi-domain] Cd Length: 161 Bit Score: 40.54 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 596 CIDPTCFGHGTCIMGVCicvpgykGEICEEEDCLDPMCSNHGIC--VKGECHCSTGWGGVNCETPL--PVC------QEQ 665
Cdd:pfam01500 9 CGFPTCSTGGTCGSGCC-------QPCCCQSSCCRPSCCQTSCCqpTTFQSSCCRPTCQPCCQTSCcqPTCcqtsscQTG 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462627980 666 CSGHGTFLL-DAGVCSCDPKWTGSDCSTE-LCTMECGSHGVCSRGICQ--------CEEGWVGPTCEERSCHSHCTE 732
Cdd:pfam01500 82 CGGIGYGQEgSSGAVSSRTRWCRPDCRVEgTCLPPCCVVSCTPPTCCQlhhaqascCRPSYCGQSCCRPACCCQCSE 158
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
1192-1270 |
5.16e-03 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 41.54 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1192 NKLFAPVALASGPDGSVYVGDF--NFVRRIFPSGNSVSILELrnrdtrhSTSPAHKYYLAMDPvSESLYLSDTNTRKVYK 1269
Cdd:COG4257 185 TPGAGPRGLAVDPDGNLWVADTgsGRIGRFDPKTGTVTEYPL-------PGGGARPYGVAVDG-DGRVWFAESGANRIVR 256
|
.
gi 2462627980 1270 L 1270
Cdd:COG4257 257 F 257
|
|
| NHL_like_2 |
cd14957 |
Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and ... |
1466-1615 |
5.26e-03 |
|
Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271327 [Multi-domain] Cd Length: 280 Bit Score: 41.48 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1466 ESARAISVSHSGLLFIAETDErkvNRIQQVTTNGE-IYIIAGaptdcdckidpncdcfSGDGgyakDAKMKAPSSLAVSP 1544
Cdd:cd14957 65 NSPYGIAVDSNGNIYVADTDN---NRIQVFNSSGVyQYSIGT----------------GGSG----DGQFNGPYGIAVDS 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462627980 1545 DGTLYVADLGNVRIR----------TISRNQAHLNDMNI-YEIASPADQELYqftVNGTHLHTLNLITRDYVYNFTYNSE 1613
Cdd:cd14957 122 NGNIYVADTGNHRIQvftssgtfsySIGSGGTGPGQFNGpQGIAVDSDGNIY---VADTGNHRIQVFTSSGTFQYTFGSS 198
|
..
gi 2462627980 1614 GD 1615
Cdd:cd14957 199 GS 200
|
|
| EGF_2 |
pfam07974 |
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins. |
633-655 |
7.91e-03 |
|
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.
Pssm-ID: 400365 Cd Length: 26 Bit Score: 36.17 E-value: 7.91e-03
|
| |
