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Conserved domains on  [gi|2462579615|ref|XP_054179054|]
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shieldin complex subunit 1 isoform X6 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4521 super family cl20897
Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally ...
 14-74 1.21e-29

Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally uncharacterized. The family includes the Chromosome 20 protein C20orf196.


The actual alignment was detected with superfamily member pfam15021:

Pssm-ID: 464452  Cd Length: 204  Bit Score: 103.71  E-value: 1.21e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462579615  14 MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPDL 74
Cdd:pfam15021   1 MESQEATPSSQSEESSILDLPSVCDIRDYVLQRPSQEASSEAFSSVEFHSFPCSSDVDPDS 61
 
Name Accession Description Interval E-value
DUF4521 pfam15021
Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally ...
 14-74 1.21e-29

Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally uncharacterized. The family includes the Chromosome 20 protein C20orf196.


Pssm-ID: 464452  Cd Length: 204  Bit Score: 103.71  E-value: 1.21e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462579615  14 MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPDL 74
Cdd:pfam15021   1 MESQEATPSSQSEESSILDLPSVCDIRDYVLQRPSQEASSEAFSSVEFHSFPCSSDVDPDS 61
 
Name Accession Description Interval E-value
DUF4521 pfam15021
Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally ...
 14-74 1.21e-29

Protein of unknown function (DUF4521); This family of vertebrate proteins is functionally uncharacterized. The family includes the Chromosome 20 protein C20orf196.


Pssm-ID: 464452  Cd Length: 204  Bit Score: 103.71  E-value: 1.21e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462579615  14 MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPDL 74
Cdd:pfam15021   1 MESQEATPSSQSEESSILDLPSVCDIRDYVLQRPSQEASSEAFSSVEFHSFPCSSDVDPDS 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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