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Conserved domains on  [gi|2217334293|ref|XP_047295813|]
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centrosome-associated protein CEP250 isoform X4 [Homo sapiens]

Protein Classification

Rootletin and Smc domain-containing protein( domain architecture ID 13865865)

protein containing domains Rootletin, Smc, and SMC_prok_B

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
39-213 2.63e-47

Ciliary rootlet component, centrosome cohesion;


:

Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 168.30  E-value: 2.63e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293   39 WRKLKNSQEAQQRQATLVRKLQAKVLQYRSWCQELEKRLEA---------------TGGPIPQRWENVEEPNLDELLVRL 103
Cdd:pfam15035    1 RRKLQAYQEAQQRQAQLVQKLQAKVLQYKKRCSELEQQLLEktselektelllrklTLEPRLQRLEREHSADLEEALIRL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  104 EEEQQRCESLAEVNTQLRLHMEKADVVNKALREDVEKLTVDWSRARDELMRKESQWQMEQEFFKGYLKGEHGRLLSLWRE 183
Cdd:pfam15035   81 EEERQRSESLSQVNSLLREQLEQASRANEALREDLQKLTNDWERAREELEQKESEWRKEEEAFNEYLSSEHSRLLSLWRE 160

                          170       180       190
                   ....*....|....*....|....*....|
gi 2217334293  184 VVTFRRHFLEMKSATDRDLMELKAEHVRLS 213
Cdd:pfam15035  161 VVAVRRQFTELKTATERDLSELKTEFSRTS 190
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 713-1475 1.41e-25

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 116.31  E-value: 1.41e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  713 LEVQIQTVTQAKEvIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLR-EKWEKERSw 791
Cdd:TIGR02168  205 LERQAEKAERYKE-LKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEE- 282

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  792 hQQELAKALESLEREKMELEMRLKEQQTEMEaiQAQREEERTQAESALCQMQLETEKERVSLLETLL-QTQKELADASQQ 870
Cdd:TIGR02168  283 -IEELQKELYALANEISRLEQQKQILRERLA--NLERQLEELEAQLEELESKLDELAEELAELEEKLeELKEELESLEAE 359

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  871 LERLRQDMKVQKLKEQEttgilqtqLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQ- 949
Cdd:TIGR02168  360 LEELEAELEELESRLEE--------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLe 431

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  950 ----RLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQ 1025
Cdd:TIGR02168  432 eaelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1026 ME----------LLRQEVKEKEADFLAQEAQLLEELEA-----SHITEQQLRASLWAQEAKAAQLQLRLRS----TESQL 1086
Cdd:TIGR02168  512 LKnqsglsgilgVLSELISVDEGYEAAIEAALGGRLQAvvvenLNAAKKAIAFLKQNELGRVTFLPLDSIKgteiQGNDR 591

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1087 EALAAEQQPGNQAQAQAQLASLYS-ALQQALGSV-----CESRPELSGGGDSAPSVWGLEPDQNGARSLFKRGPLLTALS 1160
Cdd:TIGR02168  592 EILKNIEGFLGVAKDLVKFDPKLRkALSYLLGGVlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSS 671

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1161 AEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELME 1240
Cdd:TIGR02168  672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1241 LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAagiLEEDLRTARSALKLKNEEVES 1320
Cdd:TIGR02168  752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE---LRAELTLLNEEAANLRERLES 828

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1321 ERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQE 1400
Cdd:TIGR02168  829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1401 QIQELEKCRSVLEHLPMAVQEREQKLTVQREQIreLEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQL 1475
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEGLEVRIDNL--QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 382-975 3.70e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 101.55  E-value: 3.70e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  382 QDADKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSL 461
Cdd:COG1196    263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  462 SKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSE 541
Cdd:COG1196    343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  542 LITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLLQ 621
Cdd:COG1196    423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  622 SRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQ 701
Cdd:COG1196    503 YEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  702 QNSVIEvtkgQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQL 781
Cdd:COG1196    583 RARAAL----AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  782 REKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQ 861
Cdd:COG1196    659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  862 KELADASQQLERLRQDMKVQKLKEQEttgiLQTQLQEAQRELKE------AArqhRDDLAALQEESSSLLQDKMDLQKQV 935
Cdd:COG1196    739 EELLEEEELLEEEALEELPEPPDLEE----LERELERLEREIEAlgpvnlLA---IEEYEELEERYDFLSEQREDLEEAR 811

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|
gi 2217334293  936 EDLKsQLVAQddsqrlVEQEVQEKLRETqeYNRIQKELER 975
Cdd:COG1196    812 ETLE-EAIEE------IDRETRERFLET--FDAVNENFQE 842
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1182-1942 5.92e-21

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 101.29  E-value: 5.92e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1182 RDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRME 1261
Cdd:TIGR02168  227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1262 AQGERELLQAAKENLTAQVEHLQaavvearaqaSAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKA 1341
Cdd:TIGR02168  307 LRERLANLERQLEELEAQLEELE----------SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1342 LQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQ--EQIQELEKCRSVLEHLPMAV 1419
Cdd:TIGR02168  377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkELQAELEELEEELEELQEEL 456

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1420 QEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLI 1499
Cdd:TIGR02168  457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYE 536

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1500 KELEGQRETQRVALTHLTLDLEERSQELQAQSsqihdlESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERR 1579
Cdd:TIGR02168  537 AAIEAALGGRLQAVVVENLNAAKKAIAFLKQN------ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKF 610

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1580 DQELMLqkeriqVLED--QRTRQTKILEEDLEQIKlSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLIlRDK 1657
Cdd:TIGR02168  611 DPKLRK------ALSYllGGVLVVDDLDNALELAK-KLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI-EEL 682

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1658 EKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQ 1737
Cdd:TIGR02168  683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1738 R---DQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGD 1814
Cdd:TIGR02168  763 IeelEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1815 LRAESREQEKALLALQQQ---CAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQE 1891
Cdd:TIGR02168  843 LEEQIEELSEDIESLAAEieeLEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1892 ALGKAHAALQGKEQHLLEQAELSRSL--------EASTATLQASLDACQAHSRQLEEAL 1942
Cdd:TIGR02168  923 KLAQLELRLEGLEVRIDNLQERLSEEysltleeaEALENKIEDDEEEARRRLKRLENKI 981
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1669-2236 2.02e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 79.60  E-value: 2.02e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1669 HELQELKDQLEQQLQGLHRKVGETSL-LLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQ 1747
Cdd:COG1196    216 RELKEELKELEAELLLLKLRELEAELeELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1748 EQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALL 1827
Cdd:COG1196    296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1828 ALQQQCAEQAQEHEVETRALQDSwLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHL 1907
Cdd:COG1196    376 EAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1908 LEQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQEREQLLEKS 1987
Cdd:COG1196    455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1988 LAQRVQENmiqEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEEQSLKLDSL 2067
Cdd:COG1196    535 AYEAALEA---ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2068 EPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQASVLERDSEQQRLQDELELTRRALEK 2147
Cdd:COG1196    612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2148 ERLHSPGATSTAELGSRGEQGVQLGEVSGVEAEpspdgMEKQSWRQRLEHLQQAVARLEIDRSRLQRHNVQLRSTLEQVE 2227
Cdd:COG1196    692 ELELEEALLAEEEEERELAEAEEERLEEELEEE-----ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766


                   ....*....
gi 2217334293 2228 RERRKLKRE 2236
Cdd:COG1196    767 RELERLERE 775
EnvC super family cl34844
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 246-491 1.36e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG4942:

Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 59.39  E-value: 1.36e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  246 LLLLLAKTQELEKEAHERSQELIQLKSQgdleKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTELME 325
Cdd:COG4942      8 ALLLALAAAAQADAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  326 HEASLSRNAQEEKLSLQQVIKDITQVMVEegdniAQGSGHENSLELdssIFSQFDYQDADKALTLVRSVLTRRRQAVQDL 405
Cdd:COG4942     84 ELAELEKEIAELRAELEAQKEELAELLRA-----LYRLGRQPPLAL---LLSPEDFLDAVRRLQYLKYLAPARREQAEEL 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  406 RQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQE 485
Cdd:COG4942    156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235


                   ....*.
gi 2217334293  486 AWRLRR 491
Cdd:COG4942    236 AAAAAE 241
 
Name Accession Description Interval E-value
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
39-213 2.63e-47

Ciliary rootlet component, centrosome cohesion;


Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 168.30  E-value: 2.63e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293   39 WRKLKNSQEAQQRQATLVRKLQAKVLQYRSWCQELEKRLEA---------------TGGPIPQRWENVEEPNLDELLVRL 103
Cdd:pfam15035    1 RRKLQAYQEAQQRQAQLVQKLQAKVLQYKKRCSELEQQLLEktselektelllrklTLEPRLQRLEREHSADLEEALIRL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  104 EEEQQRCESLAEVNTQLRLHMEKADVVNKALREDVEKLTVDWSRARDELMRKESQWQMEQEFFKGYLKGEHGRLLSLWRE 183
Cdd:pfam15035   81 EEERQRSESLSQVNSLLREQLEQASRANEALREDLQKLTNDWERAREELEQKESEWRKEEEAFNEYLSSEHSRLLSLWRE 160

                          170       180       190
                   ....*....|....*....|....*....|
gi 2217334293  184 VVTFRRHFLEMKSATDRDLMELKAEHVRLS 213
Cdd:pfam15035  161 VVAVRRQFTELKTATERDLSELKTEFSRTS 190
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 713-1475 1.41e-25

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 116.31  E-value: 1.41e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  713 LEVQIQTVTQAKEvIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLR-EKWEKERSw 791
Cdd:TIGR02168  205 LERQAEKAERYKE-LKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEE- 282

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  792 hQQELAKALESLEREKMELEMRLKEQQTEMEaiQAQREEERTQAESALCQMQLETEKERVSLLETLL-QTQKELADASQQ 870
Cdd:TIGR02168  283 -IEELQKELYALANEISRLEQQKQILRERLA--NLERQLEELEAQLEELESKLDELAEELAELEEKLeELKEELESLEAE 359

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  871 LERLRQDMKVQKLKEQEttgilqtqLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQ- 949
Cdd:TIGR02168  360 LEELEAELEELESRLEE--------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLe 431

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  950 ----RLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQ 1025
Cdd:TIGR02168  432 eaelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1026 ME----------LLRQEVKEKEADFLAQEAQLLEELEA-----SHITEQQLRASLWAQEAKAAQLQLRLRS----TESQL 1086
Cdd:TIGR02168  512 LKnqsglsgilgVLSELISVDEGYEAAIEAALGGRLQAvvvenLNAAKKAIAFLKQNELGRVTFLPLDSIKgteiQGNDR 591

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1087 EALAAEQQPGNQAQAQAQLASLYS-ALQQALGSV-----CESRPELSGGGDSAPSVWGLEPDQNGARSLFKRGPLLTALS 1160
Cdd:TIGR02168  592 EILKNIEGFLGVAKDLVKFDPKLRkALSYLLGGVlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSS 671

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1161 AEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELME 1240
Cdd:TIGR02168  672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1241 LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAagiLEEDLRTARSALKLKNEEVES 1320
Cdd:TIGR02168  752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE---LRAELTLLNEEAANLRERLES 828

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1321 ERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQE 1400
Cdd:TIGR02168  829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1401 QIQELEKCRSVLEHLPMAVQEREQKLTVQREQIreLEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQL 1475
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEGLEVRIDNL--QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 786-1372 9.59e-22

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 103.48  E-value: 9.59e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  786 EKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAEsalcqmqlETEKERVSLLETLLQTQKELA 865
Cdd:COG1196    220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE--------ELRLELEELELELEEAQAEEY 291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  866 DASQQLERLRQDMKVQKLKEQettgilqtQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQ 945
Cdd:COG1196    292 ELLAELARLEQDIARLEERRR--------ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  946 DDSQRLVEQEVQEKLRETQEYNRIQKELEREKAsltlslmEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQ 1025
Cdd:COG1196    364 EEALLEAEAELAEAEEELEELAEELLEALRAAA-------ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1026 MELLRQEVKEKEADfLAQEAQLLEELEASHITEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQAQL 1105
Cdd:COG1196    437 EEEEEEALEEAAEE-EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1106 ASLYSALQQALGSVCESRPELSGGGDSAPSVWGLEP-DQNGARSLFKRGPLLTALSAEAVASALHKLHQDLWKTQQTRDV 1184
Cdd:COG1196    516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIvVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1185 LRDQVQKLEERLTDTEAEKSQVHtELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQG 1264
Cdd:COG1196    596 AIGAAVDLVASDLREADARYYVL-GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1265 ERELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQE 1344
Cdd:COG1196    675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754

                          570       580
                   ....*....|....*....|....*...
gi 2217334293 1345 NLALLtQTLAEREEEVETLRGQIQELEK 1372
Cdd:COG1196    755 ELPEP-PDLEELERELERLEREIEALGP 781
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 382-975 3.70e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 101.55  E-value: 3.70e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  382 QDADKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSL 461
Cdd:COG1196    263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  462 SKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSE 541
Cdd:COG1196    343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  542 LITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLLQ 621
Cdd:COG1196    423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  622 SRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQ 701
Cdd:COG1196    503 YEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  702 QNSVIEvtkgQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQL 781
Cdd:COG1196    583 RARAAL----AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  782 REKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQ 861
Cdd:COG1196    659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  862 KELADASQQLERLRQDMKVQKLKEQEttgiLQTQLQEAQRELKE------AArqhRDDLAALQEESSSLLQDKMDLQKQV 935
Cdd:COG1196    739 EELLEEEELLEEEALEELPEPPDLEE----LERELERLEREIEAlgpvnlLA---IEEYEELEERYDFLSEQREDLEEAR 811

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|
gi 2217334293  936 EDLKsQLVAQddsqrlVEQEVQEKLRETqeYNRIQKELER 975
Cdd:COG1196    812 ETLE-EAIEE------IDRETRERFLET--FDAVNENFQE 842
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1182-1942 5.92e-21

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 101.29  E-value: 5.92e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1182 RDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRME 1261
Cdd:TIGR02168  227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1262 AQGERELLQAAKENLTAQVEHLQaavvearaqaSAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKA 1341
Cdd:TIGR02168  307 LRERLANLERQLEELEAQLEELE----------SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1342 LQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQ--EQIQELEKCRSVLEHLPMAV 1419
Cdd:TIGR02168  377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkELQAELEELEEELEELQEEL 456

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1420 QEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLI 1499
Cdd:TIGR02168  457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYE 536

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1500 KELEGQRETQRVALTHLTLDLEERSQELQAQSsqihdlESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERR 1579
Cdd:TIGR02168  537 AAIEAALGGRLQAVVVENLNAAKKAIAFLKQN------ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKF 610

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1580 DQELMLqkeriqVLED--QRTRQTKILEEDLEQIKlSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLIlRDK 1657
Cdd:TIGR02168  611 DPKLRK------ALSYllGGVLVVDDLDNALELAK-KLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI-EEL 682

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1658 EKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQ 1737
Cdd:TIGR02168  683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1738 R---DQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGD 1814
Cdd:TIGR02168  763 IeelEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1815 LRAESREQEKALLALQQQ---CAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQE 1891
Cdd:TIGR02168  843 LEEQIEELSEDIESLAAEieeLEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1892 ALGKAHAALQGKEQHLLEQAELSRSL--------EASTATLQASLDACQAHSRQLEEAL 1942
Cdd:TIGR02168  923 KLAQLELRLEGLEVRIDNLQERLSEEysltleeaEALENKIEDDEEEARRRLKRLENKI 981
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1512-2078 2.69e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 98.86  E-value: 2.69e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1512 ALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQ 1591
Cdd:COG1196    233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1592 VLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEVECQQEHIHEL 1671
Cdd:COG1196    313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1672 QELKdQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQ 1751
Cdd:COG1196    393 RAAA-ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1752 AQGQEERVKEKADALQGALEQAHMTLKERhgELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQ 1831
Cdd:COG1196    472 AALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ 549

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1832 QCAEQAQehevetralqdswlQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHLLEQA 1911
Cdd:COG1196    550 NIVVEDD--------------EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1912 ELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDV-QQLQQALAQRDEELRHQQEREQLLEKSLAQ 1990
Cdd:COG1196    616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGgSRRELLAALLEAEAELEELAERLAEEELEL 695

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1991 RVQENMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEEQSLKLDslepR 2070
Cdd:COG1196    696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE----R 771


                   ....*...
gi 2217334293 2071 LQRELERL 2078
Cdd:COG1196    772 LEREIEAL 779
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1669-2236 2.02e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 79.60  E-value: 2.02e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1669 HELQELKDQLEQQLQGLHRKVGETSL-LLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQ 1747
Cdd:COG1196    216 RELKEELKELEAELLLLKLRELEAELeELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1748 EQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALL 1827
Cdd:COG1196    296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1828 ALQQQCAEQAQEHEVETRALQDSwLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHL 1907
Cdd:COG1196    376 EAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1908 LEQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQEREQLLEKS 1987
Cdd:COG1196    455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1988 LAQRVQENmiqEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEEQSLKLDSL 2067
Cdd:COG1196    535 AYEAALEA---ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2068 EPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQASVLERDSEQQRLQDELELTRRALEK 2147
Cdd:COG1196    612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2148 ERLHSPGATSTAELGSRGEQGVQLGEVSGVEAEpspdgMEKQSWRQRLEHLQQAVARLEIDRSRLQRHNVQLRSTLEQVE 2227
Cdd:COG1196    692 ELELEEALLAEEEEERELAEAEEERLEEELEEE-----ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766


                   ....*....
gi 2217334293 2228 RERRKLKRE 2236
Cdd:COG1196    767 RELERLERE 775
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 244-874 4.31e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.48  E-value: 4.31e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  244 AQLLLLLAKTQELEKEAHERSQELIQLKSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTEL 323
Cdd:TIGR02168  323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  324 MEHEASLSRnAQEEKLSLQQVIKDITQVMVEEGDNIAQGSGHENSLELDSSIFSQFDYQDADKALTLVRSVLTRRRQAVQ 403
Cdd:TIGR02168  403 ERLEARLER-LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  404 DLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTvdlqgEVDslSKERELLQKAREELRQQLEVLE 483
Cdd:TIGR02168  482 RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI-----SVD--EGYEAAIEAALGGRLQAVVVEN 554

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  484 QEAWRLrrvNVELQLQGDS--AQGQKEEQQEELHLAVRERERLQEMLMGLEA-----KQSESLSELI-----------TL 545
Cdd:TIGR02168  555 LNAAKK---AIAFLKQNELgrVTFLPLDSIKGTEIQGNDREILKNIEGFLGVakdlvKFDPKLRKALsyllggvlvvdDL 631

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  546 REALESSH----------LEGELLR-------------QEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLS 602
Cdd:TIGR02168  632 DNALELAKklrpgyrivtLDGDLVRpggvitggsaktnSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  603 ALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQL 682
Cdd:TIGR02168  712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  683 QGLSSAKELLESSLFEAQQQnsvievtKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAE-- 760
Cdd:TIGR02168  792 EQLKEELKALREALDELRAE-------LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEel 864

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  761 QEGKTALEQQKAAHEKEVNQLREKWEKERSwHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAE---- 836
Cdd:TIGR02168  865 EELIEELESELEALLNERASLEEALALLRS-ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDnlqe 943

                          650       660       670       680
                   ....*....|....*....|....*....|....*....|.
gi 2217334293  837 --SALCQMQLETEKERVSLLETLLQ-TQKELADASQQLERL 874
Cdd:TIGR02168  944 rlSEEYSLTLEEAEALENKIEDDEEeARRRLKRLENKIKEL 984
PTZ00121 PTZ00121
MAEBL; Provisional
 953-1720 1.45e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 74.02  E-value: 1.45e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  953 EQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQE 1032
Cdd:PTZ00121  1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK 1159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1033 VKEKEADFLAQEAQLLEELEASHITEQQLRASLW--AQEAKAAQLQLRLRSTESQLEALAAEQQPGNqaqaqaqlaslys 1110
Cdd:PTZ00121  1160 AEDARKAEEARKAEDAKKAEAARKAEEVRKAEELrkAEDARKAEAARKAEEERKAEEARKAEDAKKA------------- 1226

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1111 alqQALGSVCESRPelsgggdsapsvwglepDQNGARSLFKRGPLLTALSAEAVASALHKLHQDLWKTQQTRDVlrDQVQ 1190
Cdd:PTZ00121  1227 ---EAVKKAEEAKK-----------------DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA--DELK 1284

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1191 KLEERLTDTEAEKSQVHTELQDLQRQlsqnQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQGERELLQ 1270
Cdd:PTZ00121  1285 KAEEKKKADEAKKAEEKKKADEAKKK----AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1271 AAKENLTAQvehlQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLT 1350
Cdd:PTZ00121  1361 AAEEKAEAA----EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1351 QTLAEREEEVETLRGQIQELEKQREMQKAALELLSLD-LKKRNQEVDLQQEQIQELEKCRSVLEHLPMAVQER----EQK 1425
Cdd:PTZ00121  1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADeAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKkkadEAK 1516

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1426 LTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLikelegq 1505
Cdd:PTZ00121  1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKA------- 1589

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1506 rETQRVALTHLTLDLEERSQELQAQSsqihdlESHSTVLARELQeRDQEVKSQREQIEELQRQKEHLTQDLERRDQELML 1585
Cdd:PTZ00121  1590 -EEARIEEVMKLYEEEKKMKAEEAKK------AEEAKIKAEELK-KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1586 QKERIQVLEDQRTRQTKIL---EEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEve 1662
Cdd:PTZ00121  1662 KAAEEAKKAEEDKKKAEEAkkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA-- 1739

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2217334293 1663 cqQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELK 1720
Cdd:PTZ00121  1740 --EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 732-1595 7.78e-12

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 71.16  E-value: 7.78e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  732 RCLKLELDTERSQAEQERDAAaRQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELE 811
Cdd:pfam02463  190 IDLEELKLQELKLKEQAKKAL-EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA 268

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  812 MRLKEQQTEMEAIQAQREEertqaesalcQMQLETEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQETTGI 891
Cdd:pfam02463  269 QVLKENKEEEKEKKLQEEE----------LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  892 LQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQ-VEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQ 970
Cdd:pfam02463  339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLeSERLSSAAKLKEEELELKSEEEKEAQLLLELARQLE 418

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  971 KELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQmELLRQEVKEKEADFLAQEAQLLEE 1050
Cdd:pfam02463  419 DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDL-LKETQLVKLQEQLELLLSRQKLEE 497

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1051 LEAShitEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQAQLASLYSALQQALGSVCESRPELSGGG 1130
Cdd:pfam02463  498 RSQK---ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELP 574

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1131 DSAPSVWGLEPDQNGARSLFKRGPLLTALSA----EAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQV 1206
Cdd:pfam02463  575 LGARKLRLLIPKLKLPLKSIAVLEIDPILNLaqldKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL 654

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1207 HTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAA 1286
Cdd:pfam02463  655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKI 734

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1287 VVEARAQASAAGILEEDLrTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQ 1366
Cdd:pfam02463  735 NEELKLLKQKIDEEEEEE-EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEE 813

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1367 IQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKcrsvLEHLPMAVQEREQKLTVQREQIRELEKDRETQRNV 1446
Cdd:pfam02463  814 AELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE----ELERLEEEITKEELLQELLLKEEELEEQKLKDELE 889

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1447 LEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALEleenhHKMECQQKLIKELEGQRETQRVALTHLTLDLEERSQE 1526
Cdd:pfam02463  890 SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA-----EILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKR 964

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1527 LQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLED 1595
Cdd:pfam02463  965 LLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGW 1033
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1303-1822 2.78e-10

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 65.83  E-value: 2.78e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1303 DLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALL-------TQTLAEREEEVETLRGQIQELEKQRE 1375
Cdd:PRK02224   210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLeaeiedlRETIAETEREREELAEEVRDLRERLE 289

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1376 MQKAALELLSLDLKKRNQEVDLQQEQIQELEK----CRSVLEHLPMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQL 1451
Cdd:PRK02224   290 ELEEERDDLLAEAGLDDADAEAVEARREELEDrdeeLRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1452 LELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLIKE----LEGQRETQRVALTHLTLDLEERSQEL 1527
Cdd:PRK02224   370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREerdeLREREAELEATLRTARERVEEAEALL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1528 QAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQ------ELMLQKERIQVLEDQRTRQT 1601
Cdd:PRK02224   450 EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlveaedRIERLEERREDLEELIAERR 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1602 KILEEDLEQIKlSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEVEcQQEHIHELQELKDQLEQQ 1681
Cdd:PRK02224   530 ETIEEKRERAE-ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDE 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1682 LQGLHRKVGETSLLLSQReqeivvlQQQLQEAREQ-GELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVK 1760
Cdd:PRK02224   608 IERLREKREALAELNDER-------RERLAEKRERkRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217334293 1761 EKADALQGALEQAHmTLKERHGELQDHKEQARRLEEElavegrrVQALEEVLGDLRAESREQ 1822
Cdd:PRK02224   681 AEIGAVENELEELE-ELRERREALENRVEALEALYDE-------AEELESMYGDLRAELRQR 734
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 246-491 1.36e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 59.39  E-value: 1.36e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  246 LLLLLAKTQELEKEAHERSQELIQLKSQgdleKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTELME 325
Cdd:COG4942      8 ALLLALAAAAQADAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  326 HEASLSRNAQEEKLSLQQVIKDITQVMVEegdniAQGSGHENSLELdssIFSQFDYQDADKALTLVRSVLTRRRQAVQDL 405
Cdd:COG4942     84 ELAELEKEIAELRAELEAQKEELAELLRA-----LYRLGRQPPLAL---LLSPEDFLDAVRRLQYLKYLAPARREQAEEL 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  406 RQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQE 485
Cdd:COG4942    156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235


                   ....*.
gi 2217334293  486 AWRLRR 491
Cdd:COG4942    236 AAAAAE 241
PTZ00121 PTZ00121
MAEBL; Provisional
 427-976 1.51e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 60.54  E-value: 1.51e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  427 EEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKArEELRQQLEVLEQEAWRLRRVNVELQlQGDSAQGQ 506
Cdd:PTZ00121  1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA-DEAKKKAEEDKKKADELKKAAAAKK-KADEAKKK 1426

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  507 KEEqqeelhlaVRERERLQEMlmGLEAKQSESLSEliTLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENT 586
Cdd:PTZ00121  1427 AEE--------KKKADEAKKK--AEEAKKADEAKK--KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  587 LKTEVADLRAAA---VKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVlaRAVQEKEALVREKAA 663
Cdd:PTZ00121  1495 AKKKADEAKKAAeakKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL--KKAEEKKKAEEAKKA 1572

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  664 LEVRLQAVERdrqdlAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERS 743
Cdd:PTZ00121  1573 EEDKNMALRK-----AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  744 QAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKME-----LEMRLKEQQ 818
Cdd:PTZ00121  1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEekkkaEELKKAEEE 1727

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  819 TEMEAIQAQR--EEERTQAESA---------LCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQE 887
Cdd:PTZ00121  1728 NKIKAEEAKKeaEEDKKKAEEAkkdeeekkkIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNF 1807

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  888 TT----GILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRET 963
Cdd:PTZ00121  1808 ANiiegGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEA 1887

                          570
                   ....*....|....
gi 2217334293  964 QEYNRIQK-ELERE 976
Cdd:PTZ00121  1888 DEIEKIDKdDIERE 1901
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 280-992 1.55e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 60.52  E-value: 1.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  280 ELQDRVTELSALLTQSqkqNEDYEKMIKALRETVEILETNHTELMEHEASLSRNAQEEKLSlQQVIKDITQVMVEEGDni 359
Cdd:pfam15921   82 EYSHQVKDLQRRLNES---NELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQS-QEDLRNQLQNTVHELE-- 155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  360 AQGSGHENSLEldssifsqfdyqDADKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHD-----QWEEEGKALR 434
Cdd:pfam15921  156 AAKCLKEDMLE------------DSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDsmstmHFRSLGSAIS 223

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  435 QRLQKLTGERDTLAGQTVDLQGEVDSLSKERE-----LLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEE 509
Cdd:pfam15921  224 KILRELDTEISYLKGRIFPVEDQLEALKSESQnkielLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEI 303

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  510 QQEElhlAVRERERLQEMLMGLEAKQSESLSELITLREALESSHLEGE-LLRQEQTEVTAALARAEQSIAELSSSENTLK 588
Cdd:pfam15921  304 IQEQ---ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEkQLVLANSELTEARTERDQFSQESGNLDDQLQ 380

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  589 TEVADLRAAAVKLSALNE------------ALALDKvgLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEA 656
Cdd:pfam15921  381 KLLADLHKREKELSLEKEqnkrlwdrdtgnSITIDH--LRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNE 458

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  657 LVREKAALEVRLQAVERDRQDLAEQLQG----LSSAKELLESSLFEAQQQNSVIEVT-------KGQLEVQIQTVTQAK- 724
Cdd:pfam15921  459 SLEKVSSLTAQLESTKEMLRKVVEELTAkkmtLESSERTVSDLTASLQEKERAIEATnaeitklRSRVDLKLQELQHLKn 538

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  725 -----EVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTA--LEQQKAAHEKEVNqlrekwekERSWHQQELA 797
Cdd:pfam15921  539 egdhlRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAgaMQVEKAQLEKEIN--------DRRLELQEFK 610

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  798 KALESLEREKMELEMRLKEQQTEMEAIqaqreeerTQAESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQD 877
Cdd:pfam15921  611 ILKDKKDAKIRELEARVSDLELEKVKL--------VNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  878 MKVQKLKEQETTGILQTQLQEAQRELKeaarQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEV- 956
Cdd:pfam15921  683 FRNKSEEMETTTNKLKMQLKSAQSELE----QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMt 758

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....
gi 2217334293  957 ---QEKLRETQEYNRIQKEL-----EREKASLTLSLMEKEQRLL 992
Cdd:pfam15921  759 nanKEKHFLKEEKNKLSQELstvatEKNKMAGELEVLRSQERRL 802
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 1413-2039 2.33e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 59.75  E-value: 2.33e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1413 EHLPMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENH-HK 1491
Cdd:pfam15921   74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTvHE 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1492 MECQQKLIKELEGQRETQRVALTHLTLDLEERSQEL--------QAQSSQIHDLESHSTV--------LARELQERDQEV 1555
Cdd:pfam15921  154 LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIrsilvdfeEASGKKIYEHDSMSTMhfrslgsaISKILRELDTEI 233

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1556 KSQREQIEELQRQKEHLTQDLERRdQELMLQKERIQVleDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEE 1635
Cdd:pfam15921  234 SYLKGRIFPVEDQLEALKSESQNK-IELLLQQHQDRI--EQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARN 310

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1636 GKGPSKAQRGSLEHMKLILRDKEKEVECQQEHIHElqelkdQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEARE 1715
Cdd:pfam15921  311 QNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIE------ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA 384

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1716 QGELKEQSLQSQLDEAQRaLAQRDQELEALQQEQQQAQGQEERVKEKADAL--------QGALEQAHMTLKERH------ 1781
Cdd:pfam15921  385 DLHKREKELSLEKEQNKR-LWDRDTGNSITIDHLRRELDDRNMEVQRLEALlkamksecQGQMERQMAAIQGKNeslekv 463

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1782 ----GELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCaeqaqeheVETRALQDSWLQAQAV 1857
Cdd:pfam15921  464 ssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEI--------TKLRSRVDLKLQELQH 535

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1858 LKERDQELEALRAESQSSRHQEEAARARAEALQEalgkahaALQGKEQHLLEQAELSRSLEASTATLQASLDACQAHSRQ 1937
Cdd:pfam15921  536 LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQ-------QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE 608

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1938 LEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRH----QQEREQLLEKSLAQRVQENMIQEKQNLGQEREEEEIR 2013
Cdd:pfam15921  609 FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSE 688

                          650       660
                   ....*....|....*....|....*.
gi 2217334293 2014 GLHQSVRELQLTLAQKEQEILELRET 2039
Cdd:pfam15921  689 EMETTTNKLKMQLKSAQSELEQTRNT 714
PTZ00121 PTZ00121
MAEBL; Provisional
 1909-2339 7.05e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.60  E-value: 7.05e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1909 EQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALaqRDEELRHQQEREQLlekSL 1988
Cdd:PTZ00121  1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDAR--KAEEARKAEDAKRV---EI 1156

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1989 AQRVQE-NMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEE----QSLK 2063
Cdd:PTZ00121  1157 ARKAEDaRKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAvkkaEEAK 1236

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2064 LDSLEPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQASVLERDSEQQRLQDELELTRR 2143
Cdd:PTZ00121  1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2144 ALEKERLHSPGATSTAELGSRGEQGVQLGEVSGVEAEPSPDGMEKQSWRQRLEHLQQAVARLEIDRSRLQRHNVQLRSTL 2223
Cdd:PTZ00121  1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2224 EQVERERRKLKREAMRAAQA-GSLEISKATASSPTQQDGRGQKNSDAKCVAELQKEV----VLLQAQLTLERKQKQDYIT 2298
Cdd:PTZ00121  1397 KKKAEEDKKKADELKKAAAAkKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAeeakKAEEAKKKAEEAKKADEAK 1476

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|.
gi 2217334293 2299 RSAQTSRElagLHHSLSHSLLAVAQAPEATVLEAETRRLDE 2339
Cdd:PTZ00121  1477 KKAEEAKK---ADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 229-485 8.62e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.14  E-value: 8.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  229 SREPNGSGRMDGREPAQLLLLLAKTQELEKEAHERSQELiqlksqgdlekAELQDRVTELSALLTQSQKQNEDYEKMIKA 308
Cdd:TIGR02169  659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSEL-----------RRIENRLDELSQELSDASRKIGEIEKEIEQ 727

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  309 LRETVEILETNHTELMEHEASLSRNAQEEKLSLQQVIKDITQVMVEegdnIAQGSGHENSLE--LDSSIFSQFD--YQDA 384
Cdd:TIGR02169  728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED----LHKLEEALNDLEarLSHSRIPEIQaeLSKL 803

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  385 DKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKE 464
Cdd:TIGR02169  804 EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883

                          250       260
                   ....*....|....*....|.
gi 2217334293  465 RELLQKAREELRQQLEVLEQE 485
Cdd:TIGR02169  884 LGDLKKERDELEAQLRELERK 904
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1970-2247 1.02e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.67  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1970 RDEELRHQQEREQLLE---KSLAQRVQENMIQEKQNLGQ-EREEEEIRGLHQSVRELQLTLAQKEQEILEL-RETQQRNN 2044
Cdd:TIGR02169  207 REKAERYQALLKEKREyegYELLKEKEALERQKEAIERQlASLEEELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGE 286

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2045 LEALPHSHKTSPMEEQSLKLDSLEPRLQRELERLQAALRQTEAR------EIE-WREKAQDLALSLAQTKASVSSLQEVA 2117
Cdd:TIGR02169  287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEidkllaEIEeLEREIEEERKRRDKLTEEYAELKEEL 366

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2118 MFLQASVLERDSEQQRLQDELELTRRALEK-ERLHSPGATSTAELGSRGEQGVQLG-----EVSGVEAEPSPDGMEKQSW 2191
Cdd:TIGR02169  367 EDLRAELEEVDKEFAETRDELKDYREKLEKlKREINELKRELDRLQEELQRLSEELadlnaAIAGIEAKINELEEEKEDK 446

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2217334293 2192 RQRLEHLQQAVARLEIDRSRLQRHNVQLRSTLEQVERERRKLKREAMRA-AQAGSLE 2247
Cdd:TIGR02169  447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAeAQARASE 503
 
Name Accession Description Interval E-value
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
39-213 2.63e-47

Ciliary rootlet component, centrosome cohesion;


Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 168.30  E-value: 2.63e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293   39 WRKLKNSQEAQQRQATLVRKLQAKVLQYRSWCQELEKRLEA---------------TGGPIPQRWENVEEPNLDELLVRL 103
Cdd:pfam15035    1 RRKLQAYQEAQQRQAQLVQKLQAKVLQYKKRCSELEQQLLEktselektelllrklTLEPRLQRLEREHSADLEEALIRL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  104 EEEQQRCESLAEVNTQLRLHMEKADVVNKALREDVEKLTVDWSRARDELMRKESQWQMEQEFFKGYLKGEHGRLLSLWRE 183
Cdd:pfam15035   81 EEERQRSESLSQVNSLLREQLEQASRANEALREDLQKLTNDWERAREELEQKESEWRKEEEAFNEYLSSEHSRLLSLWRE 160

                          170       180       190
                   ....*....|....*....|....*....|
gi 2217334293  184 VVTFRRHFLEMKSATDRDLMELKAEHVRLS 213
Cdd:pfam15035  161 VVAVRRQFTELKTATERDLSELKTEFSRTS 190
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 713-1475 1.41e-25

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 116.31  E-value: 1.41e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  713 LEVQIQTVTQAKEvIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLR-EKWEKERSw 791
Cdd:TIGR02168  205 LERQAEKAERYKE-LKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEE- 282

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  792 hQQELAKALESLEREKMELEMRLKEQQTEMEaiQAQREEERTQAESALCQMQLETEKERVSLLETLL-QTQKELADASQQ 870
Cdd:TIGR02168  283 -IEELQKELYALANEISRLEQQKQILRERLA--NLERQLEELEAQLEELESKLDELAEELAELEEKLeELKEELESLEAE 359

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  871 LERLRQDMKVQKLKEQEttgilqtqLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQ- 949
Cdd:TIGR02168  360 LEELEAELEELESRLEE--------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLe 431

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  950 ----RLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQ 1025
Cdd:TIGR02168  432 eaelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1026 ME----------LLRQEVKEKEADFLAQEAQLLEELEA-----SHITEQQLRASLWAQEAKAAQLQLRLRS----TESQL 1086
Cdd:TIGR02168  512 LKnqsglsgilgVLSELISVDEGYEAAIEAALGGRLQAvvvenLNAAKKAIAFLKQNELGRVTFLPLDSIKgteiQGNDR 591

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1087 EALAAEQQPGNQAQAQAQLASLYS-ALQQALGSV-----CESRPELSGGGDSAPSVWGLEPDQNGARSLFKRGPLLTALS 1160
Cdd:TIGR02168  592 EILKNIEGFLGVAKDLVKFDPKLRkALSYLLGGVlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSS 671

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1161 AEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELME 1240
Cdd:TIGR02168  672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1241 LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAagiLEEDLRTARSALKLKNEEVES 1320
Cdd:TIGR02168  752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE---LRAELTLLNEEAANLRERLES 828

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1321 ERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQE 1400
Cdd:TIGR02168  829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1401 QIQELEKCRSVLEHLPMAVQEREQKLTVQREQIreLEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQL 1475
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEGLEVRIDNL--QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 786-1372 9.59e-22

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 103.48  E-value: 9.59e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  786 EKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAEsalcqmqlETEKERVSLLETLLQTQKELA 865
Cdd:COG1196    220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE--------ELRLELEELELELEEAQAEEY 291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  866 DASQQLERLRQDMKVQKLKEQettgilqtQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQ 945
Cdd:COG1196    292 ELLAELARLEQDIARLEERRR--------ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  946 DDSQRLVEQEVQEKLRETQEYNRIQKELEREKAsltlslmEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQ 1025
Cdd:COG1196    364 EEALLEAEAELAEAEEELEELAEELLEALRAAA-------ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1026 MELLRQEVKEKEADfLAQEAQLLEELEASHITEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQAQL 1105
Cdd:COG1196    437 EEEEEEALEEAAEE-EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1106 ASLYSALQQALGSVCESRPELSGGGDSAPSVWGLEP-DQNGARSLFKRGPLLTALSAEAVASALHKLHQDLWKTQQTRDV 1184
Cdd:COG1196    516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIvVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1185 LRDQVQKLEERLTDTEAEKSQVHtELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQG 1264
Cdd:COG1196    596 AIGAAVDLVASDLREADARYYVL-GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1265 ERELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQE 1344
Cdd:COG1196    675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754

                          570       580
                   ....*....|....*....|....*...
gi 2217334293 1345 NLALLtQTLAEREEEVETLRGQIQELEK 1372
Cdd:COG1196    755 ELPEP-PDLEELERELERLEREIEALGP 781
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 382-975 3.70e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 101.55  E-value: 3.70e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  382 QDADKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSL 461
Cdd:COG1196    263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  462 SKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSE 541
Cdd:COG1196    343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  542 LITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLLQ 621
Cdd:COG1196    423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  622 SRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQ 701
Cdd:COG1196    503 YEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  702 QNSVIEvtkgQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQL 781
Cdd:COG1196    583 RARAAL----AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  782 REKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQ 861
Cdd:COG1196    659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  862 KELADASQQLERLRQDMKVQKLKEQEttgiLQTQLQEAQRELKE------AArqhRDDLAALQEESSSLLQDKMDLQKQV 935
Cdd:COG1196    739 EELLEEEELLEEEALEELPEPPDLEE----LERELERLEREIEAlgpvnlLA---IEEYEELEERYDFLSEQREDLEEAR 811

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|
gi 2217334293  936 EDLKsQLVAQddsqrlVEQEVQEKLRETqeYNRIQKELER 975
Cdd:COG1196    812 ETLE-EAIEE------IDRETRERFLET--FDAVNENFQE 842
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1182-1942 5.92e-21

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 101.29  E-value: 5.92e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1182 RDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRME 1261
Cdd:TIGR02168  227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1262 AQGERELLQAAKENLTAQVEHLQaavvearaqaSAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKA 1341
Cdd:TIGR02168  307 LRERLANLERQLEELEAQLEELE----------SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1342 LQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQ--EQIQELEKCRSVLEHLPMAV 1419
Cdd:TIGR02168  377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkELQAELEELEEELEELQEEL 456

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1420 QEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLI 1499
Cdd:TIGR02168  457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYE 536

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1500 KELEGQRETQRVALTHLTLDLEERSQELQAQSsqihdlESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERR 1579
Cdd:TIGR02168  537 AAIEAALGGRLQAVVVENLNAAKKAIAFLKQN------ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKF 610

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1580 DQELMLqkeriqVLED--QRTRQTKILEEDLEQIKlSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLIlRDK 1657
Cdd:TIGR02168  611 DPKLRK------ALSYllGGVLVVDDLDNALELAK-KLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI-EEL 682

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1658 EKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQ 1737
Cdd:TIGR02168  683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1738 R---DQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGD 1814
Cdd:TIGR02168  763 IeelEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1815 LRAESREQEKALLALQQQ---CAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQE 1891
Cdd:TIGR02168  843 LEEQIEELSEDIESLAAEieeLEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1892 ALGKAHAALQGKEQHLLEQAELSRSL--------EASTATLQASLDACQAHSRQLEEAL 1942
Cdd:TIGR02168  923 KLAQLELRLEGLEVRIDNLQERLSEEysltleeaEALENKIEDDEEEARRRLKRLENKI 981
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 429-980 1.11e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 100.01  E-value: 1.11e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  429 EGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKE 508
Cdd:COG1196    226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  509 EQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLK 588
Cdd:COG1196    306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  589 TEVADLRAAAVKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRL 668
Cdd:COG1196    386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  669 QAVERDRQDLAEQLQGLSSAKELLESSL-----FEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERS 743
Cdd:COG1196    466 AELLEEAALLEAALAELLEELAEAAARLlllleAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA 545

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  744 QAEQER-DAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEME 822
Cdd:COG1196    546 AALQNIvVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  823 AIQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQEttgiLQTQLQEAQRE 902
Cdd:COG1196    626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE----EELELEEALLA 701

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217334293  903 LKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASL 980
Cdd:COG1196    702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1512-2078 2.69e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 98.86  E-value: 2.69e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1512 ALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQ 1591
Cdd:COG1196    233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1592 VLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEVECQQEHIHEL 1671
Cdd:COG1196    313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1672 QELKdQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQ 1751
Cdd:COG1196    393 RAAA-ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1752 AQGQEERVKEKADALQGALEQAHMTLKERhgELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQ 1831
Cdd:COG1196    472 AALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ 549

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1832 QCAEQAQehevetralqdswlQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHLLEQA 1911
Cdd:COG1196    550 NIVVEDD--------------EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1912 ELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDV-QQLQQALAQRDEELRHQQEREQLLEKSLAQ 1990
Cdd:COG1196    616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGgSRRELLAALLEAEAELEELAERLAEEELEL 695

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1991 RVQENMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEEQSLKLDslepR 2070
Cdd:COG1196    696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE----R 771


                   ....*...
gi 2217334293 2071 LQRELERL 2078
Cdd:COG1196    772 LEREIEAL 779
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 381-942 9.20e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 96.93  E-value: 9.20e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  381 YQDADKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLagqtvdlQGEVDS 460
Cdd:COG1196    234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL-------EQDIAR 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  461 LSKERELLQKAREELRQQLEVLEQEAwrlrrvnVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLS 540
Cdd:COG1196    307 LEERRRELEERLEELEEELAELEEEL-------EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  541 ELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLL 620
Cdd:COG1196    380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  621 QSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVErdRQDLAEQLQGLSSAKELLESSLFEAQ 700
Cdd:COG1196    460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK--AALLLAGLRGLAGAVAVLIGVEAAYE 537

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  701 QqnsVIEVTKGQLEVQIQTVT--QAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEV 778
Cdd:COG1196    538 A---ALEAALAAALQNIVVEDdeVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  779 NQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLL 858
Cdd:COG1196    615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  859 QTQKELADASQQLERLRQdmKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDL 938
Cdd:COG1196    695 LEEALLAEEEEERELAEA--EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772


                   ....
gi 2217334293  939 KSQL 942
Cdd:COG1196    773 EREI 776
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 776-1623 1.83e-18

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 92.81  E-value: 1.83e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  776 KEVNQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAEsalcqmqlETEKERVSLLE 855
Cdd:TIGR02168  210 EKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE--------ELRLEVSELEE 281

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  856 TLLQTQKELADASQQLERLRQDMKVQKLKEQEttgiLQTQLQEAQRELKEAARQH---RDDLAALQEESSSLLQDKMDLQ 932
Cdd:TIGR02168  282 EIEELQKELYALANEISRLEQQKQILRERLAN----LERQLEELEAQLEELESKLdelAEELAELEEKLEELKEELESLE 357

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  933 KQVEDLKSQLVAQDDSQRLVEQEVQEklretqeYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDM 1012
Cdd:TIGR02168  358 AELEELEAELEELESRLEELEEQLET-------LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1013 QEAqgEQKELSAQMELLRQEVKEKEADFLAQEAQLLEELEASHITEQQLRASlwaqEAKAAQLQLRLRSTESQLEALaae 1092
Cdd:TIGR02168  431 EEA--ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA----ERELAQLQARLDSLERLQENL--- 501

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1093 QQPGNQAQAQAQLASLYSALQQALGSVCESRPELSgggdsapsvwglepdqngarslfkrgpllTALSAEAVASALHKLH 1172
Cdd:TIGR02168  502 EGFSEGVKALLKNQSGLSGILGVLSELISVDEGYE-----------------------------AAIEAALGGRLQAVVV 552

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1173 QDLwktQQTRDVLRDQVQKLEERLTDTEAeKSQVHTELQDLQRQLSQNQEEkskWEGKQNSLESELMELHETMASLQSRL 1252
Cdd:TIGR02168  553 ENL---NAAKKAIAFLKQNELGRVTFLPL-DSIKGTEIQGNDREILKNIEG---FLGVAKDLVKFDPKLRKALSYLLGGV 625

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1253 RRAELQRmEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAAG----------ILEEDLRTARSALKLKNEEVESER 1322
Cdd:TIGR02168  626 LVVDDLD-NALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSsilerrreieELEEKIEELEEKIAELEKALAELR 704

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1323 ERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQI 1402
Cdd:TIGR02168  705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1403 QELEKcrsvlehlpmAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLvtlecla 1482
Cdd:TIGR02168  785 EELEA----------QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI------- 847

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1483 leleenhhkmECQQKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQI 1562
Cdd:TIGR02168  848 ----------EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1563 EELQRQKEHLTQDLERRDQELMLQKERI----QVLEDQRTRQTKILEEDLEQIKLSLRERGRELT 1623
Cdd:TIGR02168  918 EELREKLAQLELRLEGLEVRIDNLQERLseeySLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1323-1895 1.51e-17

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 90.00  E-value: 1.51e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1323 ERAQALQE-----QGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDL 1397
Cdd:COG1196    213 ERYRELKEelkelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1398 QQEQIQELEKCRSVLEHLPMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVT 1477
Cdd:COG1196    293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1478 LECLALELEENhhkmecQQKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKS 1557
Cdd:COG1196    373 ELAEAEEELEE------LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1558 QREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQTKILEEDLEQIKlslrERGRELTTQRQLMQERAEEGK 1637
Cdd:COG1196    447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA----DYEGFLEGVKAALLLAGLRGL 522

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1638 GPSKAQRGSLEHMKLILRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQ--EIVVLQQQLQEARE 1715
Cdd:COG1196    523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAalAAALARGAIGAAVD 602

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1716 QGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERhGELQDHKEQARRLE 1795
Cdd:COG1196    603 LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR-RELLAALLEAEAEL 681

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1796 EELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSS 1875
Cdd:COG1196    682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761

                          570       580
                   ....*....|....*....|
gi 2217334293 1876 RHQEEAARARAEALQEALGK 1895
Cdd:COG1196    762 LEELERELERLEREIEALGP 781
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 384-1052 1.96e-17

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 89.73  E-value: 1.96e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  384 ADKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSK 463
Cdd:TIGR02168  279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  464 ERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESlsELI 543
Cdd:TIGR02168  359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELK 436

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  544 TLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLLQSR 623
Cdd:TIGR02168  437 ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQS 516

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  624 HQQEAATTQLEQLHQEAKRQ---EEVLARAVQ-----EKEALVREKAALE--------------VRLQAVERDRQDLAEQ 681
Cdd:TIGR02168  517 GLSGILGVLSELISVDEGYEaaiEAALGGRLQavvveNLNAAKKAIAFLKqnelgrvtflpldsIKGTEIQGNDREILKN 596

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  682 LQGLSSAKELLESSLFEAQ-------QQNSVIEVTKGQLEVQIQT------VTQAKEVIQG---------EVRCLKLELD 739
Cdd:TIGR02168  597 IEGFLGVAKDLVKFDPKLRkalsyllGGVLVVDDLDNALELAKKLrpgyriVTLDGDLVRPggvitggsaKTNSSILERR 676

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  740 TERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQElaKALESLEREKMELEMRLKEQQT 819
Cdd:TIGR02168  677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR--KDLARLEAEVEQLEERIAQLSK 754

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  820 EMEAIQAQREEERTQAESALCQMQlETEKERVSLLETLLQTQKELADASQQLERLRQDMkvqklkeqettgilqTQLQEA 899
Cdd:TIGR02168  755 ELTELEAEIEELEERLEEAEEELA-EAEAEIEELEAQIEQLKEELKALREALDELRAEL---------------TLLNEE 818

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  900 QRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKAS 979
Cdd:TIGR02168  819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898

                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217334293  980 LTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGE----QKELSAQMELLRQEVKEKEADFLAQEAQLLEELE 1052
Cdd:TIGR02168  899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRidnlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1559-2147 2.39e-17

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 89.23  E-value: 2.39e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1559 REQIEELQRQKEH------LTQDLERRDQELMLQK-ERIQVLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQE 1631
Cdd:COG1196    199 ERQLEPLERQAEKaeryreLKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE 278

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1632 RAEEgkgpSKAQRGSLEHMKLILRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQ 1711
Cdd:COG1196    279 LELE----LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1712 EAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQA 1791
Cdd:COG1196    355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1792 RRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQEHEVETRALQDSWLQAQAvlkerdQELEALRAE 1871
Cdd:COG1196    435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA------EADYEGFLE 508

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1872 SQSSRHQEEAARARAEALQEALGKAHAALQGKEQHLLEQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGE--I 1949
Cdd:COG1196    509 GVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARaaL 588

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1950 QDQDLRYQEDVQQLQQALAQRDEELRHQQEREQLLEKSLAQRVQENMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQK 2029
Cdd:COG1196    589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2030 EQEILELRETQQRNNLEALPHSHKTSPMEEQSLKLDSLEPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKAS 2109
Cdd:COG1196    669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748

                          570       580       590
                   ....*....|....*....|....*....|....*...
gi 2217334293 2110 VSSLQEvamflQASVLERDSEQQRLQDELELTRRALEK 2147
Cdd:COG1196    749 EEEALE-----ELPEPPDLEELERELERLEREIEALGP 781
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1343-2115 7.20e-17

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 87.80  E-value: 7.20e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1343 QENLALLTQTLAEREEEVETLRGQ----IQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEkcrSVLEHLPMA 1418
Cdd:TIGR02168  185 RENLDRLEDILNELERQLKSLERQaekaERYKELKAELRELELALLVLRLEELREELEELQEELKEAE---EELEELTAE 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1419 VQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEEnhhKMECQQKL 1498
Cdd:TIGR02168  262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES---KLDELAEE 338

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1499 IKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLER 1578
Cdd:TIGR02168  339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1579 RDQELMLQKERIQVLEDQRTR----QTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLIL 1654
Cdd:TIGR02168  419 LQQEIEELLKKLEEAELKELQaeleELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1655 RDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVG---ETSLLLSQREQEIVV----LQQQLQEAREQGELKEQSLQSQ 1727
Cdd:TIGR02168  499 ENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaAIEAALGGRLQAVVVenlnAAKKAIAFLKQNELGRVTFLPL 578

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1728 LDEAQRALAQRDQELEALQQEQQQAQGQEERVKEK--------------ADALQGALEQAH-MTLKERHGELQDHKEQAR 1792
Cdd:TIGR02168  579 DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvVDDLDNALELAKkLRPGYRIVTLDGDLVRPG 658

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1793 ------RLEEELAVEGRRVQ--ALEEVLGDLRAESREQEKALLALQQQCAEQaqehEVETRALQDSWLQAQAVLKERDQE 1864
Cdd:TIGR02168  659 gvitggSAKTNSSILERRREieELEEKIEELEEKIAELEKALAELRKELEEL----EEELEQLRKELEELSRQISALRKD 734

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1865 LEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHLLEQAELSRSLEASTATLQASLDacqahsrQLEEALRI 1944
Cdd:TIGR02168  735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK-------ALREALDE 807

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1945 QEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQEREQLLEKSLAQRVQENMIQEKQNLGQEREEEEIRGLHQSVRELQL 2024
Cdd:TIGR02168  808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2025 TLAQKEQEILELRETQQRNNLEALP----HSHKTSPMEEQSLKLDSLEPRLQRELERLqAALRQTEAREIEwrEKAQDLA 2100
Cdd:TIGR02168  888 ALALLRSELEELSEELRELESKRSElrreLEELREKLAQLELRLEGLEVRIDNLQERL-SEEYSLTLEEAE--ALENKIE 964

                          810
                   ....*....|....*
gi 2217334293 2101 LSLAQTKASVSSLQE 2115
Cdd:TIGR02168  965 DDEEEARRRLKRLEN 979
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1195-1737 1.27e-16

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 86.91  E-value: 1.27e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1195 RLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQG----ERELLQ 1270
Cdd:COG1196    233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiarLEERRR 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1271 AAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLT 1350
Cdd:COG1196    313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1351 QTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQR 1430
Cdd:COG1196    393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1431 EQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLIKELEGQRETQR 1510
Cdd:COG1196    473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1511 VALTHLTLDLEERSQELQA------QSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQELM 1584
Cdd:COG1196    553 VEDDEVAAAAIEYLKAAKAgratflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1585 LQKERIQVLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEgkgpskaQRGSLEHMKLILRDKEKEVECQ 1664
Cdd:COG1196    633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE-------LAERLAEEELELEEALLAEEEE 705

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217334293 1665 QEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQ 1737
Cdd:COG1196    706 ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 737-1581 1.81e-16

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 86.28  E-value: 1.81e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  737 ELDTERSQAEQERDAAARQLAQAE---QEGKTALEQQKAAHEK--EVNQLREKWEKERSWhqqELAKALESLEREKMELE 811
Cdd:TIGR02169  167 EFDRKKEKALEELEEVEENIERLDliiDEKRQQLERLRREREKaeRYQALLKEKREYEGY---ELLKEKEALERQKEAIE 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  812 MRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQEttgi 891
Cdd:TIGR02169  244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELED---- 319

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  892 LQTQLQEAQRELKEAARQHRDDLAALQEEsssllqdkmdlQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQK 971
Cdd:TIGR02169  320 AEERLAKLEAEIDKLLAEIEELEREIEEE-----------RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  972 ELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEadflaqeaQLLEEL 1051
Cdd:TIGR02169  389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE--------WKLEQL 460

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1052 EASHITEQQlraSLWAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQAQLAS--LYSALQQALGSVCE-------- 1121
Cdd:TIGR02169  461 AADLSKYEQ---ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEevLKASIQGVHGTVAQlgsvgery 537

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1122 -SRPELSGGG----------DSAPSVWGLEPDQNGARSLF--------KRGPLLTALSAEAVASALHKLHQDLWKTQQTR 1182
Cdd:TIGR02169  538 aTAIEVAAGNrlnnvvveddAVAKEAIELLKRRKAGRATFlplnkmrdERRDLSILSEDGVIGFAVDLVEFDPKYEPAFK 617

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1183 DVLRDQ--VQKLEE-RLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQR 1259
Cdd:TIGR02169  618 YVFGDTlvVEDIEAaRRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSEL 697

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1260 MEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQg 1339
Cdd:TIGR02169  698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK- 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1340 kaLQENLALLTQTLAerEEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKCRSVLEHLPMAV 1419
Cdd:TIGR02169  777 --LEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1420 QEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQL-VTLECLALELEENHHKMECQQKL 1498
Cdd:TIGR02169  853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELeAQIEKKRKRLSELKAKLEALEEE 932

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1499 IKELEgQRETQRVALTHLTLDLEERSQELQAQSSQIHDLEShstVLARELQERDQEVKSQREQIEELQRQKEHLTQDLER 1578
Cdd:TIGR02169  933 LSEIE-DPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEP---VNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008


                   ...
gi 2217334293 1579 RDQ 1581
Cdd:TIGR02169 1009 IEE 1011
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 254-830 3.39e-16

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 85.37  E-value: 3.39e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  254 QELEKEAHERSQELIQLKSQG-DLEKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTELMEHEaslsR 332
Cdd:COG1196    216 RELKEELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE----Y 291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  333 NAQEEKLSLQQVIKDITQVMVEEGDNIAQGSGHENSLEldssifsqFDYQDADKALTLVRSVLTRRRQAVQDLRQQLAGC 412
Cdd:COG1196    292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELE--------EELEELEEELEELEEELEEAEEELEEAEAELAEA 363

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  413 QEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRLRRV 492
Cdd:COG1196    364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  493 NVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEvtAALAR 572
Cdd:COG1196    444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL--AGLRG 521

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  573 AEQSIAELSSSENTLKTEVADLRAAAVKLSAL-NEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAV 651
Cdd:COG1196    522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVeDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  652 QEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEV 731
Cdd:COG1196    602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  732 RCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERswHQQELAKALESLEREKMELE 811
Cdd:COG1196    682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE--ELLEEEELLEEEALEELPEP 759

                          570
                   ....*....|....*....
gi 2217334293  812 MRLKEQQTEMEAIQAQREE 830
Cdd:COG1196    760 PDLEELERELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 632-1286 1.28e-15

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 83.45  E-value: 1.28e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  632 QLEQLHQEAKRQEEvlARAVQEKEALVREKAALevrlqaveRDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKG 711
Cdd:COG1196    201 QLEPLERQAEKAER--YRELKEELKELEAELLL--------LKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  712 QLEVQIQTVTQAKEVIQGEVRclklELDTERSQAEQERDAAARQLAQAEQEgktaleqqkaahEKEVNQLREKWEKERSW 791
Cdd:COG1196    271 ELRLELEELELELEEAQAEEY----ELLAELARLEQDIARLEERRRELEER------------LEELEEELAELEEELEE 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  792 HQQELAKALESLEREKMELEMRLKEQQtemEAIQAQREEERTQAesalcqmqlETEKERVSLLETLLQTQKELADASQQL 871
Cdd:COG1196    335 LEEELEELEEELEEAEEELEEAEAELA---EAEEALLEAEAELA---------EAEEELEELAEELLEALRAAAELAAQL 402

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  872 ERLRQdmkvqklkEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRL 951
Cdd:COG1196    403 EELEE--------AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  952 VEQEVQEKLRETQEynRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDmqeAQGEQKELSAQMELLRQ 1031
Cdd:COG1196    475 LEAALAELLEELAE--AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV---EAAYEAALEAALAAALQ 549

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1032 EVKEKEADFLAQEAQLLEELEASHITEQQLRAslwAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQAQLASLYSA 1111
Cdd:COG1196    550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK---IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1112 LQQALGSVCESRPELSGGGDSAPSVWGLEPDQNGARSLFKRGPLLTALSA--EAVASALHKLHQDLWKTQQTRDVLRDQV 1189
Cdd:COG1196    627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEaeAELEELAERLAEEELELEEALLAEEEEE 706

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1190 QKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQR-------MEA 1262
Cdd:COG1196    707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIealgpvnLLA 786

                          650       660
                   ....*....|....*....|....
gi 2217334293 1263 QGERELLQAAKENLTAQVEHLQAA 1286
Cdd:COG1196    787 IEEYEELEERYDFLSEQREDLEEA 810
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1647-2206 4.09e-15

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 81.91  E-value: 4.09e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1647 LEHMKLILRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQS 1726
Cdd:COG1196    227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1727 QLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQ 1806
Cdd:COG1196    307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1807 ALEEVLGDlRAESREQEKALLALQQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARA 1886
Cdd:COG1196    387 ELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1887 EALQEALGKAHAALQGKEQHLLEQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQA 1966
Cdd:COG1196    466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA 545

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1967 LAQRD---EELRHQQEREQLLEKSLAQRVQENMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRN 2043
Cdd:COG1196    546 AALQNivvEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2044 NLEALphshktsPMEEQSLKLDSLEPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQAS 2123
Cdd:COG1196    626 TLVAA-------RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2124 VLERDSEQQRLQDELELTRRALEKERLHSPGATSTAELGSRgEQGVQLGEVSGVEAEPSPDGMEKQSWRQRLEHLQQAVA 2203
Cdd:COG1196    699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE-ELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777


                   ...
gi 2217334293 2204 RLE 2206
Cdd:COG1196    778 ALG 780
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 545-1372 4.83e-15

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 81.64  E-value: 4.83e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  545 LREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLLQSRH 624
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  625 QQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNS 704
Cdd:TIGR02168  317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  705 VIEVTKGQLEVQIQTVTQAKEviqgevrclklELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREK 784
Cdd:TIGR02168  397 SLNNEIERLEARLERLEDRRE-----------RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  785 WEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESA----LCQMQLETEKERVSLLETLLQ- 859
Cdd:TIGR02168  466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSgilgVLSELISVDEGYEAAIEAALGg 545

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  860 -----TQKELADASQQLERLRQDmKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSsllqdkmDLQKQ 934
Cdd:TIGR02168  546 rlqavVVENLNAAKKAIAFLKQN-ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP-------KLRKA 617

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  935 VEDLKSQLVAQDDSqrlveQEVQEKLRETQEYNRI---QKELEREKASLT-------LSLMEKEQRLLVLQEADSIRQQE 1004
Cdd:TIGR02168  618 LSYLLGGVLVVDDL-----DNALELAKKLRPGYRIvtlDGDLVRPGGVITggsaktnSSILERRREIEELEEKIEELEEK 692

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1005 LSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLL-EELEASHITEQQLRASLWAQEAKAAQLQLRLRSTE 1083
Cdd:TIGR02168  693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLArLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1084 SQLEALAAEQQPGNQAQAQAQLASLYSALQQALGSVcesRPELSgggdsapsvwglepdqngarslfkrgplLTALSAEA 1163
Cdd:TIGR02168  773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDEL---RAELT----------------------------LLNEEAAN 821

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1164 VASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHE 1243
Cdd:TIGR02168  822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1244 TMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEaRAQASAAGILEEDLRTARSALKLKnEEVESERE 1323
Cdd:TIGR02168  902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEAR-RRLKRLEN 979

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*....
gi 2217334293 1324 RAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEK 1372
Cdd:TIGR02168  980 KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDR 1028
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1669-2236 2.02e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 79.60  E-value: 2.02e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1669 HELQELKDQLEQQLQGLHRKVGETSL-LLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQ 1747
Cdd:COG1196    216 RELKEELKELEAELLLLKLRELEAELeELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1748 EQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALL 1827
Cdd:COG1196    296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1828 ALQQQCAEQAQEHEVETRALQDSwLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHL 1907
Cdd:COG1196    376 EAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1908 LEQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQEREQLLEKS 1987
Cdd:COG1196    455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1988 LAQRVQENmiqEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEEQSLKLDSL 2067
Cdd:COG1196    535 AYEAALEA---ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2068 EPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQASVLERDSEQQRLQDELELTRRALEK 2147
Cdd:COG1196    612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2148 ERLHSPGATSTAELGSRGEQGVQLGEVSGVEAEpspdgMEKQSWRQRLEHLQQAVARLEIDRSRLQRHNVQLRSTLEQVE 2227
Cdd:COG1196    692 ELELEEALLAEEEEERELAEAEEERLEEELEEE-----ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766


                   ....*....
gi 2217334293 2228 RERRKLKRE 2236
Cdd:COG1196    767 RELERLERE 775
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 436-1076 3.04e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 79.33  E-value: 3.04e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  436 RLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELH 515
Cdd:TIGR02168  233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  516 LAVRERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLR 595
Cdd:TIGR02168  313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  596 AAAVKLSALNEALALDKVGL-----NQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQA 670
Cdd:TIGR02168  393 LQIASLNNEIERLEARLERLedrreRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  671 VERDRQDLAEQLQGLSSAKELLESSLFEAQQ-QNSVIEVTKGQ--LEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQ 747
Cdd:TIGR02168  473 AEQALDAAERELAQLQARLDSLERLQENLEGfSEGVKALLKNQsgLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVV 552

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  748 ERDAAARQLAQAEQEGKT------ALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEM 821
Cdd:TIGR02168  553 ENLNAAKKAIAFLKQNELgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLD 632

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  822 EAIQAQREEER------------------TQAESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLR------QD 877
Cdd:TIGR02168  633 NALELAKKLRPgyrivtldgdlvrpggviTGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRkeleelEE 712

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  878 MKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQ 957
Cdd:TIGR02168  713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  958 EKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLqeadsirQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKE 1037
Cdd:TIGR02168  793 QLKEELKALREALDELRAELTLLNEEAANLRERLESL-------ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865

                          650       660       670
                   ....*....|....*....|....*....|....*....
gi 2217334293 1038 ADFLAQEAQLLEELEASHITEQQLRASLWAQEAKAAQLQ 1076
Cdd:TIGR02168  866 ELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 845-1635 2.37e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 76.25  E-value: 2.37e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  845 ETEKERVSLLETLLQTQKELADASQQLERL-RQDMKVQKLKEqettgiLQTQLQEAQREL-KEAARQHRDDLAALQEESS 922
Cdd:TIGR02168  176 ETERKLERTRENLDRLEDILNELERQLKSLeRQAEKAERYKE------LKAELRELELALlVLRLEELREELEELQEELK 249

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  923 SLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQ 1002
Cdd:TIGR02168  250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1003 QELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLlEELEASHITEQQLRASLwaqEAKAAQLQLRLRST 1082
Cdd:TIGR02168  330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL-EELEEQLETLRSKVAQL---ELQIASLNNEIERL 405

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1083 ESQLEALAAEQQPGNQAQAQAQLASLYSALQQALGSVCESRPELSGggdsapsvwglepdqngarslfkrgpllTALSAE 1162
Cdd:TIGR02168  406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE----------------------------LQEELE 457

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1163 AVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTdteaeksqvhtELQDLQRQLSQNQEEKSKWEGKQNSLESELMELh 1242
Cdd:TIGR02168  458 RLEEALEELREELEEAEQALDAAERELAQLQARLD-----------SLERLQENLEGFSEGVKALLKNQSGLSGILGVL- 525

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1243 etmaslqsrlrrAELQRMEAQGERELLQAAKENLTA-QVEHLQAAVVEARAQASA----AGILEEDLRTARSALKLKNEE 1317
Cdd:TIGR02168  526 ------------SELISVDEGYEAAIEAALGGRLQAvVVENLNAAKKAIAFLKQNelgrVTFLPLDSIKGTEIQGNDREI 593

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1318 VESERERAQALQEQGELKVAQGKALQENLA--LLTQTLAE---------REEEVETLRGQIQE----LEKQREMQKAALE 1382
Cdd:TIGR02168  594 LKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvLVVDDLDNalelakklrPGYRIVTLDGDLVRpggvITGGSAKTNSSIL 673

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1383 LLSLDLKKRNQEVDLQQEQIQELEKCRSVLEHlpmAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIE 1462
Cdd:TIGR02168  674 ERRREIEELEEKIEELEEKIAELEKALAELRK---ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1463 SQRGQVQDLKKQLVTLECLALELEENHHKMEcqqKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHST 1542
Cdd:TIGR02168  751 QLSKELTELEAEIEELEERLEEAEEELAEAE---AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1543 VLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRT---RQTKILEEDLEQIKLSLRERG 1619
Cdd:TIGR02168  828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleEALALLRSELEELSEELRELE 907

                          810
                   ....*....|....*.
gi 2217334293 1620 RELTTQRQLMQERAEE 1635
Cdd:TIGR02168  908 SKRSELRRELEELREK 923
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 244-874 4.31e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.48  E-value: 4.31e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  244 AQLLLLLAKTQELEKEAHERSQELIQLKSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTEL 323
Cdd:TIGR02168  323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  324 MEHEASLSRnAQEEKLSLQQVIKDITQVMVEEGDNIAQGSGHENSLELDSSIFSQFDYQDADKALTLVRSVLTRRRQAVQ 403
Cdd:TIGR02168  403 ERLEARLER-LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  404 DLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTvdlqgEVDslSKERELLQKAREELRQQLEVLE 483
Cdd:TIGR02168  482 RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI-----SVD--EGYEAAIEAALGGRLQAVVVEN 554

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  484 QEAWRLrrvNVELQLQGDS--AQGQKEEQQEELHLAVRERERLQEMLMGLEA-----KQSESLSELI-----------TL 545
Cdd:TIGR02168  555 LNAAKK---AIAFLKQNELgrVTFLPLDSIKGTEIQGNDREILKNIEGFLGVakdlvKFDPKLRKALsyllggvlvvdDL 631

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  546 REALESSH----------LEGELLR-------------QEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLS 602
Cdd:TIGR02168  632 DNALELAKklrpgyrivtLDGDLVRpggvitggsaktnSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  603 ALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQL 682
Cdd:TIGR02168  712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  683 QGLSSAKELLESSLFEAQQQnsvievtKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAE-- 760
Cdd:TIGR02168  792 EQLKEELKALREALDELRAE-------LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEel 864

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  761 QEGKTALEQQKAAHEKEVNQLREKWEKERSwHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAE---- 836
Cdd:TIGR02168  865 EELIEELESELEALLNERASLEEALALLRS-ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDnlqe 943

                          650       660       670       680
                   ....*....|....*....|....*....|....*....|.
gi 2217334293  837 --SALCQMQLETEKERVSLLETLLQ-TQKELADASQQLERL 874
Cdd:TIGR02168  944 rlSEEYSLTLEEAEALENKIEDDEEeARRRLKRLENKIKEL 984
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1665-2242 4.76e-13

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 74.97  E-value: 4.76e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1665 QEHIHELQELKDQLEQQLQGLHRkvgetslllsQREQeivvlqqqlqeAREQGELKEQSLQSQLDEAQRALAQRDQELEA 1744
Cdd:COG1196    185 EENLERLEDILGELERQLEPLER----------QAEK-----------AERYRELKEELKELEAELLLLKLRELEAELEE 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1745 LQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEK 1824
Cdd:COG1196    244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1825 ALLALQQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKE 1904
Cdd:COG1196    324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1905 QHLLEQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQEREQLL 1984
Cdd:COG1196    404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1985 EKSLAQRVQENMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEEQSLKL 2064
Cdd:COG1196    484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAI 563

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2065 DSLEPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVsSLQEVAMFLQASVLERDSEQQRLQDELELTRRA 2144
Cdd:COG1196    564 EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR-EADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2145 LEKERLHSPGATSTAELGSRGEQGVQLGEVSGVEAEPSPDGMEKQSWRQRLEHLQQAVARLEIDRSRLQRHNVQLRSTLE 2224
Cdd:COG1196    643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722

                          570
                   ....*....|....*...
gi 2217334293 2225 QVERERRKLKREAMRAAQ 2242
Cdd:COG1196    723 EEALEEQLEAEREELLEE 740
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 440-819 9.95e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 74.32  E-value: 9.95e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  440 LTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVR 519
Cdd:TIGR02168  661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  520 ERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAV 599
Cdd:TIGR02168  741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  600 KLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLA 679
Cdd:TIGR02168  821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  680 EQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQA----KEVIQGEVRCLKLELDTERSQAEQERDAAARQ 755
Cdd:TIGR02168  901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseeYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217334293  756 LAQAEQEGKTALEQQkaaheKEVNQLREKWEKERSwhqqELAKALESLER--EKMELEMRLKEQQT 819
Cdd:TIGR02168  981 IKELGPVNLAAIEEY-----EELKERYDFLTAQKE----DLTEAKETLEEaiEEIDREARERFKDT 1037
PTZ00121 PTZ00121
MAEBL; Provisional
 953-1720 1.45e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 74.02  E-value: 1.45e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  953 EQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQE 1032
Cdd:PTZ00121  1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK 1159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1033 VKEKEADFLAQEAQLLEELEASHITEQQLRASLW--AQEAKAAQLQLRLRSTESQLEALAAEQQPGNqaqaqaqlaslys 1110
Cdd:PTZ00121  1160 AEDARKAEEARKAEDAKKAEAARKAEEVRKAEELrkAEDARKAEAARKAEEERKAEEARKAEDAKKA------------- 1226

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1111 alqQALGSVCESRPelsgggdsapsvwglepDQNGARSLFKRGPLLTALSAEAVASALHKLHQDLWKTQQTRDVlrDQVQ 1190
Cdd:PTZ00121  1227 ---EAVKKAEEAKK-----------------DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA--DELK 1284

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1191 KLEERLTDTEAEKSQVHTELQDLQRQlsqnQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQGERELLQ 1270
Cdd:PTZ00121  1285 KAEEKKKADEAKKAEEKKKADEAKKK----AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1271 AAKENLTAQvehlQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLT 1350
Cdd:PTZ00121  1361 AAEEKAEAA----EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1351 QTLAEREEEVETLRGQIQELEKQREMQKAALELLSLD-LKKRNQEVDLQQEQIQELEKCRSVLEHLPMAVQER----EQK 1425
Cdd:PTZ00121  1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADeAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKkkadEAK 1516

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1426 LTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLikelegq 1505
Cdd:PTZ00121  1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKA------- 1589

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1506 rETQRVALTHLTLDLEERSQELQAQSsqihdlESHSTVLARELQeRDQEVKSQREQIEELQRQKEHLTQDLERRDQELML 1585
Cdd:PTZ00121  1590 -EEARIEEVMKLYEEEKKMKAEEAKK------AEEAKIKAEELK-KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1586 QKERIQVLEDQRTRQTKIL---EEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEve 1662
Cdd:PTZ00121  1662 KAAEEAKKAEEDKKKAEEAkkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA-- 1739

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2217334293 1663 cqQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELK 1720
Cdd:PTZ00121  1740 --EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
PTZ00121 PTZ00121
MAEBL; Provisional
 469-1037 2.25e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 73.25  E-value: 2.25e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  469 QKAREELRQQLEVL--EQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLR 546
Cdd:PTZ00121  1223 AKKAEAVKKAEEAKkdAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK 1302

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  547 EALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSAlnEALALDKVGLNQQLLQSRHQQ 626
Cdd:PTZ00121  1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA--EAAEEKAEAAEKKKEEAKKKA 1380

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  627 EAATTQLEQLHQ--EAKRQ-EEVLARAVQEKEALVREKAALEVRLQAVERDRqdlAEQLQGLSSAKELLESSLFEAQQQN 703
Cdd:PTZ00121  1381 DAAKKKAEEKKKadEAKKKaEEDKKKADELKKAAAAKKKADEAKKKAEEKKK---ADEAKKKAEEAKKADEAKKKAEEAK 1457

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  704 SVIEVTKGQLEVQiqtvtQAKEVIQGEVRCLKLEldtERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLRE 783
Cdd:PTZ00121  1458 KAEEAKKKAEEAK-----KADEAKKKAEEAKKAD---EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK 1529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  784 KWEKERSwhqQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQKE 863
Cdd:PTZ00121  1530 AEEAKKA---DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  864 LaDASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLK---- 939
Cdd:PTZ00121  1607 M-KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKkaee 1685

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  940 ------SQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEAdSIRQQELSALRQDMQ 1013
Cdd:PTZ00121  1686 dekkaaEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA-KKDEEEKKKIAHLKK 1764

                          570       580
                   ....*....|....*....|....*
gi 2217334293 1014 EAQGEQKELSAQME-LLRQEVKEKE 1037
Cdd:PTZ00121  1765 EEEKKAEEIRKEKEaVIEEELDEED 1789
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 732-1595 7.78e-12

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 71.16  E-value: 7.78e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  732 RCLKLELDTERSQAEQERDAAaRQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELE 811
Cdd:pfam02463  190 IDLEELKLQELKLKEQAKKAL-EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA 268

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  812 MRLKEQQTEMEAIQAQREEertqaesalcQMQLETEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQETTGI 891
Cdd:pfam02463  269 QVLKENKEEEKEKKLQEEE----------LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  892 LQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQ-VEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQ 970
Cdd:pfam02463  339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLeSERLSSAAKLKEEELELKSEEEKEAQLLLELARQLE 418

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  971 KELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQmELLRQEVKEKEADFLAQEAQLLEE 1050
Cdd:pfam02463  419 DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDL-LKETQLVKLQEQLELLLSRQKLEE 497

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1051 LEAShitEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQAQLASLYSALQQALGSVCESRPELSGGG 1130
Cdd:pfam02463  498 RSQK---ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELP 574

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1131 DSAPSVWGLEPDQNGARSLFKRGPLLTALSA----EAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQV 1206
Cdd:pfam02463  575 LGARKLRLLIPKLKLPLKSIAVLEIDPILNLaqldKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL 654

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1207 HTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAA 1286
Cdd:pfam02463  655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKI 734

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1287 VVEARAQASAAGILEEDLrTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQ 1366
Cdd:pfam02463  735 NEELKLLKQKIDEEEEEE-EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEE 813

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1367 IQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKcrsvLEHLPMAVQEREQKLTVQREQIRELEKDRETQRNV 1446
Cdd:pfam02463  814 AELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE----ELERLEEEITKEELLQELLLKEEELEEQKLKDELE 889

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1447 LEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALEleenhHKMECQQKLIKELEGQRETQRVALTHLTLDLEERSQE 1526
Cdd:pfam02463  890 SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA-----EILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKR 964

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1527 LQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLED 1595
Cdd:pfam02463  965 LLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGW 1033
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1186-1692 2.20e-11

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 69.68  E-value: 2.20e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1186 RDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRlrraelqRMEAQGE 1265
Cdd:PRK02224   229 REQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE-------RDDLLAE 301

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1266 RELLQAAKENLTAQVEHLQAAVVEaraqasaagiLEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQEN 1345
Cdd:PRK02224   302 AGLDDADAEAVEARREELEDRDEE----------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1346 LALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSldlkkrnqevdlqqeqiQELEKCRSVLEHLPMAVQEREQK 1425
Cdd:PRK02224   372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE-----------------DFLEELREERDELREREAELEAT 434

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1426 LTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLIKELEgQ 1505
Cdd:PRK02224   435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIE-R 513

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1506 RETQRVALTHLtldLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQkehlTQDLERRDQELml 1585
Cdd:PRK02224   514 LEERREDLEEL---IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREE----VAELNSKLAEL-- 584

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1586 qKERIQVLEDQRTRQTKIleEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGpskaqrgslehmklilRDKEKEVECQQ 1665
Cdd:PRK02224   585 -KERIESLERIRTLLAAI--ADAEDEIERLREKREALAELNDERRERLAEKRE----------------RKRELEAEFDE 645

                          490       500
                   ....*....|....*....|....*..
gi 2217334293 1666 EHIHELQELKDQLEQQLQGLHRKVGET 1692
Cdd:PRK02224   646 ARIEEAREDKERAEEYLEQVEEKLDEL 672
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1490-2205 4.95e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 68.54  E-value: 4.95e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1490 HKMECQQKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQK 1569
Cdd:TIGR02168  253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1570 EHLTQDLERRDQELMLQKERIQVLEDQRTRqtkiLEEDLEQIKLSLRERGRELTTQRQLMQERAEEGkgpsKAQRGSLEH 1649
Cdd:TIGR02168  333 DELAEELAELEEKLEELKEELESLEAELEE----LEAELEELESRLEELEEQLETLRSKVAQLELQI----ASLNNEIER 404

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1650 MKLILRDKEKEVECQQEHIHELqeLKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLD 1729
Cdd:TIGR02168  405 LEARLERLEDRRERLQQEIEEL--LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1730 EAQRALAQRDQELEALQQEQQQAQGQEERVKEKAD------------------------ALQGALEQAHMTLKERHGELQ 1785
Cdd:TIGR02168  483 ELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlselisvdegyeaaieaALGGRLQAVVVENLNAAKKAI 562

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1786 DHKEQARrleeelaVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQEL 1865
Cdd:TIGR02168  563 AFLKQNE-------LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL 635

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1866 EALRAESQSSR--HQEEAARARAEALQEALGKAHAALQGKEQHLLEQAELSRSLEASTATLQASLDACQAHSRQLEEALR 1943
Cdd:TIGR02168  636 ELAKKLRPGYRivTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1944 IQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQEREQLLEKSLAQRVQENMIQEKQNLGQEREEEEIRGLHQSVRELQ 2023
Cdd:TIGR02168  716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2024 LTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEEQ-SLKLDSLEPRLQR------ELERLQAALRQTEAREIEWREKA 2096
Cdd:TIGR02168  796 EELKALREALDELRAELTLLNEEAANLRERLESLERRiAATERRLEDLEEQieelseDIESLAAEIEELEELIEELESEL 875

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2097 QDLALSLAQTKASVSSLQEVAMFLQASVLERDSEQQRLQDELELTRRALEKERLHSPGATSTAE--LGSRGEQGVQLGEV 2174
Cdd:TIGR02168  876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDnlQERLSEEYSLTLEE 955

                          730       740       750
                   ....*....|....*....|....*....|.
gi 2217334293 2175 sgVEAEPSPDGMEKQSWRQRLEHLQQAVARL 2205
Cdd:TIGR02168  956 --AEALENKIEDDEEEARRRLKRLENKIKEL 984
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 244-830 1.13e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 67.27  E-value: 1.13e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  244 AQLLLLLAKTQELEKEAHERSQELIQLKSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTEL 323
Cdd:COG1196    267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  324 MEHEASLsRNAQEEKLSLQQVIKDITQVMVEEGDNIAQGsghensleldssifsQFDYQDADKALTLVRSVLTRRRQAVQ 403
Cdd:COG1196    347 EEAEEEL-EEAEAELAEAEEALLEAEAELAEAEEELEEL---------------AEELLEALRAAAELAAQLEELEEAEE 410

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  404 DLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLE 483
Cdd:COG1196    411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  484 QEAWRLRRVNVELQLQGDSAQGQKEEQQEELhlavrererlqemlmgleakQSESLSELITLREALEsSHLEGELLRQEQ 563
Cdd:COG1196    491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRG--------------------LAGAVAVLIGVEAAYE-AALEAALAAALQ 549

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  564 TEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLhqeakrQ 643
Cdd:COG1196    550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL------L 623

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  644 EEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQA 723
Cdd:COG1196    624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  724 KEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERswhqQELAKALESL 803
Cdd:COG1196    704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL----ERLEREIEAL 779

                          570       580
                   ....*....|....*....|....*..
gi 2217334293  804 EREKMELEMRLKEQQTEMEAIQAQREE 830
Cdd:COG1196    780 GPVNLLAIEEYEELEERYDFLSEQRED 806
PTZ00121 PTZ00121
MAEBL; Provisional
 456-1076 1.73e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 67.09  E-value: 1.73e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  456 GEVDSLSKERELLQKArEELRQQLEVLEQEAWR----LRRV----NVELQLQGDSAQGQKEEQQEELHLAVRERERLQEM 527
Cdd:PTZ00121  1109 GKAEEARKAEEAKKKA-EDARKAEEARKAEDARkaeeARKAedakRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEV 1187

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  528 LMGLEAKQSESLSELITLREALESSHLEgELLRQEQTEVTAALARAEQS---------IAELSSSENTLKTEVADLRAAA 598
Cdd:PTZ00121  1188 RKAEELRKAEDARKAEAARKAEEERKAE-EARKAEDAKKAEAVKKAEEAkkdaeeakkAEEERNNEEIRKFEEARMAHFA 1266

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  599 VKLSALN--EALALDKVglnQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQ-EKEALVREKAALEVRLQAVERDR 675
Cdd:PTZ00121  1267 RRQAAIKaeEARKADEL---KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEaKKKAEEAKKKADAAKKKAEEAKK 1343

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  676 QDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQiqtvTQAKEVIQGEVRCLKLELDTERS----QAEQERDA 751
Cdd:PTZ00121  1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK----KKAEEKKKADEAKKKAEEDKKKAdelkKAAAAKKK 1419

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  752 AARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSwhQQELAKALEslEREKMELEMRLKEQQTEMEAIQAQREEE 831
Cdd:PTZ00121  1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK--AEEAKKKAE--EAKKADEAKKKAEEAKKADEAKKKAEEA 1495

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  832 RTQAESAlcqMQLETEKERVSLLETLLQTQKelADASQQLERLRQDMKVQKLKEQETTgilqTQLQEAQrELKEAARQHR 911
Cdd:PTZ00121  1496 KKKADEA---KKAAEAKKKADEAKKAEEAKK--ADEAKKAEEAKKADEAKKAEEKKKA----DELKKAE-ELKKAEEKKK 1565

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  912 DDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQ--DDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQ 989
Cdd:PTZ00121  1566 AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKlyEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  990 RllvlQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEadflAQEAQLLEELEASHIteQQLRASLWAQE 1069
Cdd:PTZ00121  1646 K----KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK----AAEALKKEAEEAKKA--EELKKKEAEEK 1715


                   ....*..
gi 2217334293 1070 AKAAQLQ 1076
Cdd:PTZ00121  1716 KKAEELK 1722
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1303-1822 2.78e-10

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 65.83  E-value: 2.78e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1303 DLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALL-------TQTLAEREEEVETLRGQIQELEKQRE 1375
Cdd:PRK02224   210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLeaeiedlRETIAETEREREELAEEVRDLRERLE 289

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1376 MQKAALELLSLDLKKRNQEVDLQQEQIQELEK----CRSVLEHLPMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQL 1451
Cdd:PRK02224   290 ELEEERDDLLAEAGLDDADAEAVEARREELEDrdeeLRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1452 LELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLIKE----LEGQRETQRVALTHLTLDLEERSQEL 1527
Cdd:PRK02224   370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREerdeLREREAELEATLRTARERVEEAEALL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1528 QAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQ------ELMLQKERIQVLEDQRTRQT 1601
Cdd:PRK02224   450 EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlveaedRIERLEERREDLEELIAERR 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1602 KILEEDLEQIKlSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEVEcQQEHIHELQELKDQLEQQ 1681
Cdd:PRK02224   530 ETIEEKRERAE-ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDE 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1682 LQGLHRKVGETSLLLSQReqeivvlQQQLQEAREQ-GELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVK 1760
Cdd:PRK02224   608 IERLREKREALAELNDER-------RERLAEKRERkRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217334293 1761 EKADALQGALEQAHmTLKERHGELQDHKEQARRLEEElavegrrVQALEEVLGDLRAESREQ 1822
Cdd:PRK02224   681 AEIGAVENELEELE-ELRERREALENRVEALEALYDE-------AEELESMYGDLRAELRQR 734
PTZ00121 PTZ00121
MAEBL; Provisional
 520-1092 2.87e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 66.32  E-value: 2.87e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  520 ERERLQEMLMGLEA-KQSESLSELITLREALESSHLEgELLRQEQTEVTAALARAEqsiaELSSSENTLKTEVADLRAAA 598
Cdd:PTZ00121  1107 ETGKAEEARKAEEAkKKAEDARKAEEARKAEDARKAE-EARKAEDAKRVEIARKAE----DARKAEEARKAEDAKKAEAA 1181

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  599 VKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVlaRAVQEKEalvreKAALEVRLQAVERDRQDL 678
Cdd:PTZ00121  1182 RKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAV--KKAEEAK-----KDAEEAKKAEEERNNEEI 1254

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  679 aEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLEldtERSQAEQERDAAARQLAQ 758
Cdd:PTZ00121  1255 -RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE---EAKKADEAKKKAEEAKKK 1330

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  759 AEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESA 838
Cdd:PTZ00121  1331 ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  839 lcqMQLETEKERVSLLETLLQTQKELADASQQLERLRQ-DMKVQKLKEQETTGILQTQLQEAQR--ELKEAARQHR--DD 913
Cdd:PTZ00121  1411 ---KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKAEEAKKKAEEAKKadEAKKKAEEAKkaDE 1487

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  914 LAALQEES---SSLLQDKMDLQKQVEDLKSQLVAQ--DDSQRLVEQEVQEKLRETQEYNR---IQKELEREKASLTLSLM 985
Cdd:PTZ00121  1488 AKKKAEEAkkkADEAKKAAEAKKKADEAKKAEEAKkaDEAKKAEEAKKADEAKKAEEKKKadeLKKAEELKKAEEKKKAE 1567

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  986 EK----EQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQM-----ELLRQEVKEKEADFLAQEAQLLEELEASHI 1056
Cdd:PTZ00121  1568 EAkkaeEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkaeeAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647

                          570       580       590
                   ....*....|....*....|....*....|....*.
gi 2217334293 1057 TEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAAE 1092
Cdd:PTZ00121  1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 468-1089 2.91e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 66.23  E-value: 2.91e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  468 LQKAREELRQQLEVLEQE---AWRLRRVNVEL-QLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELI 543
Cdd:TIGR02168  191 LEDILNELERQLKSLERQaekAERYKELKAELrELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  544 TLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVA--------------DLRAAAVKLSALNEALA 609
Cdd:TIGR02168  271 ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEeleaqleeleskldELAEELAELEEKLEELK 350

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  610 LDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSsaK 689
Cdd:TIGR02168  351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL--K 428

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  690 ELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQER---DAAARQLAQAEQEGKTA 766
Cdd:TIGR02168  429 KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSEGV 508

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  767 LEQQKAAHEK--------EVNQLREKWEKERSW------------HQQELAKALESLEREKMELEMRLKEQQTEMEAIQA 826
Cdd:TIGR02168  509 KALLKNQSGLsgilgvlsELISVDEGYEAAIEAalggrlqavvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQG 588

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  827 QREEERTQAESAL--CQMQLETEKERVSLLETLLQT---QKELADASQQLERLRQDMKVQKLK--------------EQE 887
Cdd:TIGR02168  589 NDREILKNIEGFLgvAKDLVKFDPKLRKALSYLLGGvlvVDDLDNALELAKKLRPGYRIVTLDgdlvrpggvitggsAKT 668

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  888 TTGILQTQ-----LQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQeklRE 962
Cdd:TIGR02168  669 NSSILERRreieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE---QL 745

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  963 TQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQ-----------------ELSALRQDMQEAQGEQKELSAQ 1025
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEleaqieqlkeelkalreALDELRAELTLLNEEAANLRER 825

                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217334293 1026 MELLRQEV--KEKEADFLAQEAQLLEELEASHITEQ-QLRASLWAQEAKAAQLQLRLRSTESQLEAL 1089
Cdd:TIGR02168  826 LESLERRIaaTERRLEDLEEQIEELSEDIESLAAEIeELEELIEELESELEALLNERASLEEALALL 892
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
380-905 4.03e-10

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 65.71  E-value: 4.03e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  380 DYQDADKALTLVRSVLT-----RRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVD- 453
Cdd:COG4913    263 RYAAARERLAELEYLRAalrlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEq 342

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  454 LQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAV-----------RERE 522
Cdd:COG4913    343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALaeaeaalrdlrRELR 422

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  523 RLQEMLMGLEAKQSESLSELITLREALESsHLE---------GELL--RQEQTEVTAALARA-----------EQSIAEL 580
Cdd:COG4913    423 ELEAEIASLERRKSNIPARLLALRDALAE-ALGldeaelpfvGELIevRPEEERWRGAIERVlggfaltllvpPEHYAAA 501

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  581 SSSENTLK------TEVADLRAAAVKLSALNEALALDKVGLN--------QQLLQSRHQQEAATTqLEQLHQEAK----- 641
Cdd:COG4913    502 LRWVNRLHlrgrlvYERVRTGLPDPERPRLDPDSLAGKLDFKphpfrawlEAELGRRFDYVCVDS-PEELRRHPRaitra 580

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  642 ------------------RQEEVL-ARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLE--SSLFEAQ 700
Cdd:COG4913    581 gqvkgngtrhekddrrriRSRYVLgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDE 660

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  701 QQNSVIEVTKGQLEVQIQTVTQAKEVIQgevrclklELDTERSQAEQERDAAARQLAQAEQEgKTALEQQKAAHEKEVNQ 780
Cdd:COG4913    661 IDVASAEREIAELEAELERLDASSDDLA--------ALEEQLEELEAELEELEEELDELKGE-IGRLEKELEQAEEELDE 731

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  781 LREKWE----KERSWHQQELAKALESLEREKMELEMRlKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSL--- 853
Cdd:COG4913    732 LQDRLEaaedLARLELRALLEERFAAALGDAVERELR-ENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLdad 810

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293  854 LETLLQTQKELAD-ASQQLERLRQDMKvQKLKEQETTGI--LQTQLQEAQRELKE 905
Cdd:COG4913    811 LESLPEYLALLDRlEEDGLPEYEERFK-ELLNENSIEFVadLLSKLRRAIREIKE 864
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1522-2235 9.10e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 64.31  E-value: 9.10e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1522 ERSQELQAQSSQIHDLESHstVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQT 1601
Cdd:TIGR02168  210 EKAERYKELKAELRELELA--LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1602 KILEE------DLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEVECQQEHIHELQELK 1675
Cdd:TIGR02168  288 KELYAlaneisRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1676 DQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQgelKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQ 1755
Cdd:TIGR02168  368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR---LERLEDRRERLQQEIEELLKKLEEAELKELQAELEE 444

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1756 EERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAE 1835
Cdd:TIGR02168  445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGV 524

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1836 QAQEHEVETR-------ALQDSwlqAQAVLKERDQE-LEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHL 1907
Cdd:TIGR02168  525 LSELISVDEGyeaaieaALGGR---LQAVVVENLNAaKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFL 601

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1908 LEQAELSRSLEASTATLQA---------SLDACQAHSRQLEEALRI--QEGE-IQDQDLRYQEDVQQLQQALAQRDEELR 1975
Cdd:TIGR02168  602 GVAKDLVKFDPKLRKALSYllggvlvvdDLDNALELAKKLRPGYRIvtLDGDlVRPGGVITGGSAKTNSSILERRREIEE 681

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1976 HQQEREQLLEKSLAQRVQENMIQEKQNLGQEReeeeirglhqsVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTS 2055
Cdd:TIGR02168  682 LEEKIEELEEKIAELEKALAELRKELEELEEE-----------LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2056 PMEEQSLKLDSLEPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQASVLERDSEQQRLQ 2135
Cdd:TIGR02168  751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2136 DELELTRRALEkerlhspgaTSTAELGSRGEQGVQLgEVSGVEAEPSPDGMEKQswrqrLEHLQQAVARLEIDRSRLQRH 2215
Cdd:TIGR02168  831 RRIAATERRLE---------DLEEQIEELSEDIESL-AAEIEELEELIEELESE-----LEALLNERASLEEALALLRSE 895

                          730       740
                   ....*....|....*....|....
gi 2217334293 2216 NVQLRSTLEQVERE----RRKLKR 2235
Cdd:TIGR02168  896 LEELSEELRELESKrselRRELEE 919
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1345-1798 2.81e-09

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 62.73  E-value: 2.81e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1345 NLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELekcRSVLEHLPMAVQEREQ 1424
Cdd:TIGR04523  198 KLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL---KDEQNKIKKQLSEKQK 274

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1425 KLTVQREQIRELEKdretQRNVLEHQLLELEKKDQM---------IESQRGQVQDLKKQLVTLECLALELEENHHKMEcq 1495
Cdd:TIGR04523  275 ELEQNNKKIKELEK----QLNQLKSEISDLNNQKEQdwnkelkseLKNQEKKLEEIQNQISQNNKIISQLNEQISQLK-- 348

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1496 qKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQD 1575
Cdd:TIGR04523  349 -KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1576 LERRDQELMLQKERIQVLEDQRTRQTKILEedleqiklslrergrELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILR 1655
Cdd:TIGR04523  428 IERLKETIIKNNSEIKDLTNQDSVKELIIK---------------NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELK 492

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1656 DKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREqgELKEQSLQSQLDEAQRAL 1735
Cdd:TIGR04523  493 SKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF--ELKKENLEKEIDEKNKEI 570

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217334293 1736 AQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEEL 1798
Cdd:TIGR04523  571 EELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
517-1068 3.74e-09

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 62.36  E-value: 3.74e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  517 AVRERERLQEMLmgleAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRA 596
Cdd:PRK02224   232 ARETRDEADEVL----EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  597 AAVKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEvlaRAVQEKEalvrEKAALEVRLQAVERDRQ 676
Cdd:PRK02224   308 DAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE---RAEELRE----EAAELESELEEAREAVE 380

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  677 DLAEQLqglssakELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERsqaeqERDAAARQL 756
Cdd:PRK02224   381 DRREEI-------EELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTAR-----ERVEEAEAL 448

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  757 AQAeqeGKTALEQQKAAHEKEVNQLREKWEKerswhQQELAKALESLEREKMELEMRLkeqqtemeaiqaQREEERTQAE 836
Cdd:PRK02224   449 LEA---GKCPECGQPVEGSPHVETIEEDRER-----VEELEAELEDLEEEVEEVEERL------------ERAEDLVEAE 508

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  837 SalcqmQLETEKERVSLLETLLQTQKELADA-SQQLERLRQDMKVQKLKEQETtgilqtqlQEAQRELKEAARQHRDDLA 915
Cdd:PRK02224   509 D-----RIERLEERREDLEELIAERRETIEEkRERAEELRERAAELEAEAEEK--------REAAAEAEEEAEEAREEVA 575

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  916 ALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREK-------ASLTLSLMEKE 988
Cdd:PRK02224   576 ELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKReleaefdEARIEEAREDK 655

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  989 QRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAqLLEELEASHITEQQLRASLWAQ 1068
Cdd:PRK02224   656 ERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEA-LYDEAEELESMYGDLRAELRQR 734
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 776-1634 5.25e-09

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 61.91  E-value: 5.25e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  776 KEVNQLREKWEKERSWHQQELA-----KALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKER 850
Cdd:pfam02463  142 GKIEIIAMMKPERRLEIEEEAAgsrlkRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEL 221

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  851 VSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAARQhrddlaalQEESSSLLQDKMD 930
Cdd:pfam02463  222 EEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE--------KKLQEEELKLLAK 293

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  931 LQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRetqeynRIQKELEREKASL-------------TLSLMEKEQRLLVLQEA 997
Cdd:pfam02463  294 EEEELKSELLKLERRKVDDEEKLKESEKEKK------KAEKELKKEKEEIeelekelkeleikREAEEEEEEELEKLQEK 367

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  998 DSIRQQELSALRQDMQEAQGEQKELsAQMELLRQEVKEKEADFLAQEAQLLEELEASHITEQ-----QLRASLWAQEAKA 1072
Cdd:pfam02463  368 LEQLEEELLAKKKLESERLSSAAKL-KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEEleileEEEESIELKQGKL 446

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1073 AQLQLRLRSTESQLEALAAEQQPGNQAQAQAQLASLYSALQQALGSVCESRPELSGGGDSAPSVWGLEPDQNGARSLFKR 1152
Cdd:pfam02463  447 TEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIIS 526

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1153 GPLLTALSAEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQN 1232
Cdd:pfam02463  527 AHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLA 606

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1233 SLESELMELHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASaagiLEEDLRTARSALK 1312
Cdd:pfam02463  607 QLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLS----ELTKELLEIQELQ 682

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1313 LKNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRN 1392
Cdd:pfam02463  683 EKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEK 762

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1393 QEVDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLK 1472
Cdd:pfam02463  763 EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALEL 842

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1473 KQLVTLECLALELEENHHKMECQQKLIKELEGQR-ETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQER 1551
Cdd:pfam02463  843 KEEQKLEKLAEEELERLEEEITKEELLQELLLKEeELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEER 922

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1552 DQEVKSQREQIEELQRqKEHLTQDLERRDQE--LMLQKERIQVLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLM 1629
Cdd:pfam02463  923 IKEEAEILLKYEEEPE-ELLLEEADEKEKEEnnKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLE 1001


                   ....*
gi 2217334293 1630 QERAE 1634
Cdd:pfam02463 1002 EEKKK 1006
PTZ00121 PTZ00121
MAEBL; Provisional
 547-1377 8.27e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 61.31  E-value: 8.27e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  547 EALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLLQSRHQQ 626
Cdd:PTZ00121  1070 EGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAE 1149

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  627 EAATTQLEQLHQEAKRQEEvlARAVQEKEALVREKAALEVRLqaverdrqdlAEQLQGLSSAKELLESSLFEAQQQnsVI 706
Cdd:PTZ00121  1150 DAKRVEIARKAEDARKAEE--ARKAEDAKKAEAARKAEEVRK----------AEELRKAEDARKAEAARKAEEERK--AE 1215

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  707 EVTKGQLEVQIQTVTQAKEVIQGEVRCLKLE---LDTERSQAEQERDA--AARQLAQAEQEGKTALEQQKAAHEKEVNQL 781
Cdd:PTZ00121  1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEeerNNEEIRKFEEARMAhfARRQAAIKAEEARKADELKKAEEKKKADEA 1295

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  782 REKWEKERSwhqQELAKALESlEREKMELEMRLKEQQTEMEAIQAQREEERTQAESAlcqmqletekervslletllqtQ 861
Cdd:PTZ00121  1296 KKAEEKKKA---DEAKKKAEE-AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA----------------------K 1349

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  862 KELADASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQ--RELKEAARQHRDDLAALQEessslLQDKMDLQKQVEDLK 939
Cdd:PTZ00121  1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEekKKADEAKKKAEEDKKKADE-----LKKAAAAKKKADEAK 1424

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  940 SQLvaqddSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRllvlqEADSIRQQELSALRQDMQEAQGEQ 1019
Cdd:PTZ00121  1425 KKA-----EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK-----KADEAKKKAEEAKKADEAKKKAEE 1494

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1020 KELSAQmELLRQEVKEKEADFL--AQEAQLLEELEASHITEQqlraslwAQEAKAAQLQLRLRSTESQLEALAAEQQPGN 1097
Cdd:PTZ00121  1495 AKKKAD-EAKKAAEAKKKADEAkkAEEAKKADEAKKAEEAKK-------ADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1098 QAQAQAqlaslysalqqalgsvcesrpelsgggdsapsvwglEPDQNGARslfkrgplltalsaeavasalhKLHQDLWK 1177
Cdd:PTZ00121  1567 EEAKKA------------------------------------EEDKNMAL----------------------RKAEEAKK 1588

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1178 TQQTRDvlrDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETM-ASLQSRLRRAE 1256
Cdd:PTZ00121  1589 AEEARI---EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKkAEEENKIKAAE 1665

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1257 LQRMEAQGER--ELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALK-----------LKNEEVESERE 1323
Cdd:PTZ00121  1666 EAKKAEEDKKkaEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKaeeenkikaeeAKKEAEEDKKK 1745

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1324 RAQALQEQGEL-KVAQGKALQENLAlltqtLAEREEEVETLRGQIQELEKQREMQ 1377
Cdd:PTZ00121  1746 AEEAKKDEEEKkKIAHLKKEEEKKA-----EEIRKEKEAVIEEELDEEDEKRRME 1795
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 382-695 8.29e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 61.23  E-value: 8.29e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  382 QDADKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSL 461
Cdd:TIGR02168  701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  462 SKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSE 541
Cdd:TIGR02168  781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  542 LITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLLQ 621
Cdd:TIGR02168  861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  622 SRHQ-QEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAAL-EVRL------QAVERDRQDLAEQLQGLSSAKELLE 693
Cdd:TIGR02168  941 LQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgPVNLaaieeyEELKERYDFLTAQKEDLTEAKETLE 1020


                   ..
gi 2217334293  694 SS 695
Cdd:TIGR02168 1021 EA 1022
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 251-980 8.41e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 61.24  E-value: 8.41e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  251 AKTQELEKEAHERSQELIQL----KSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTELMEH 326
Cdd:TIGR02169  258 EEISELEKRLEEIEQLLEELnkkiKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  327 EASLSRNAQEEKLSLQQVIKDITQVMVEEGDNIAQGSghENSLELDSSIFSQFDYQDADKALTLVRSVLTRRRQAVQDLR 406
Cdd:TIGR02169  338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE--EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  407 QQLAGCQEAVNL----LQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVL 482
Cdd:TIGR02169  416 QRLSEELADLNAaiagIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  483 EQEawrlRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMG-LEAKQSESLSELITLREALESSHLEgeLLRQ 561
Cdd:TIGR02169  496 EAQ----ARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATaIEVAAGNRLNNVVVEDDAVAKEAIE--LLKR 569

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  562 EQ----TEVTAALARAEQSIAELSSSENTLKTEVA----DLRAAAVKLSALNEALALDK-------------VGLNQQLL 620
Cdd:TIGR02169  570 RKagraTFLPLNKMRDERRDLSILSEDGVIGFAVDlvefDPKYEPAFKYVFGDTLVVEDieaarrlmgkyrmVTLEGELF 649

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  621 QSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQ 700
Cdd:TIGR02169  650 EKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  701 QQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQ 780
Cdd:TIGR02169  730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR 809

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  781 LR------EKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMqLETEKERVSLL 854
Cdd:TIGR02169  810 IEarlreiEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL-RDLESRLGDLK 888

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  855 ETLLQTQKELadasQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAarqhrDDLAALQEESSSLLQDKMDLQKQ 934
Cdd:TIGR02169  889 KERDELEAQL----RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI-----EDPKGEDEEIPEEELSLEDVQAE 959

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*.
gi 2217334293  935 VEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASL 980
Cdd:TIGR02169  960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1162-1878 1.21e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 60.85  E-value: 1.21e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1162 EAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMEL 1241
Cdd:TIGR02169  332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1242 HETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESE 1321
Cdd:TIGR02169  412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1322 RERAQALQEQGELKVAQGKALQENLalltqtlaerEEEVETLRGQIQELEKQREMQKAALEL-LSLDLKKRNQEVDLQQE 1400
Cdd:TIGR02169  492 LAEAEAQARASEERVRGGRAVEEVL----------KASIQGVHGTVAQLGSVGERYATAIEVaAGNRLNNVVVEDDAVAK 561

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1401 QIQELEKCRSVlehlpmavqEREQKLTVQREQIRELEKDRETQRNVLEHqLLELEKKDQMIESQRGQVqdLKKQLVTLEC 1480
Cdd:TIGR02169  562 EAIELLKRRKA---------GRATFLPLNKMRDERRDLSILSEDGVIGF-AVDLVEFDPKYEPAFKYV--FGDTLVVEDI 629

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1481 LALELEENHHKMECQQKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQRE 1560
Cdd:TIGR02169  630 EAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ 709

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1561 QIEELQRQKEHLTQDLERRDQELMLQKERIqvledqrtrqtKILEEDLEQIKLSLRERGRELTTQRQLMQERaEEGKGPS 1640
Cdd:TIGR02169  710 ELSDASRKIGEIEKEIEQLEQEEEKLKERL-----------EELEEDLSSLEQEIENVKSELKELEARIEEL-EEDLHKL 777

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1641 KAQRGSLEHmklilRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQ---- 1716
Cdd:TIGR02169  778 EEALNDLEA-----RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQiksi 852

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1717 ------GELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQ 1790
Cdd:TIGR02169  853 ekeienLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1791 ARRLEEELAvEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQEHEvETRALQDSWLQAQAVLKERDQELEALRA 1870
Cdd:TIGR02169  933 LSEIEDPKG-EDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYE-EVLKRLDELKEKRAKLEEERKAILERIE 1010


                   ....*...
gi 2217334293 1871 ESQSSRHQ 1878
Cdd:TIGR02169 1011 EYEKKKRE 1018
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1286-1510 1.29e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 59.39  E-value: 1.29e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1286 AVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRG 1365
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1366 QIQELEKQREMQKAALELLSLDLKKRNQ----EVDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQREQIRELEKDRE 1441
Cdd:COG4942     91 EIAELRAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1442 TQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQ-QKLIKELEGQRETQR 1510
Cdd:COG4942    171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEElEALIARLEAEAAAAA 240
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 402-1049 1.30e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 60.47  E-value: 1.30e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  402 VQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEV 481
Cdd:TIGR02169  296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  482 LEQEAWRLRRVNVELQlqgdsaqgqkeeqqeelhlavRERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQ 561
Cdd:TIGR02169  376 VDKEFAETRDELKDYR---------------------EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  562 EQTEVTAalaRAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALdkvgLNQQLLQSRHQQEAATTQLEQLHQEA- 640
Cdd:TIGR02169  435 KINELEE---EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR----VEKELSKLQRELAEAEAQARASEERVr 507

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  641 --KRQEEVLARAVQEKEALVRE--------KAALEV----RLQAVERDRQDLAEQLQGLSSAKEL-----LESSLFEAQQ 701
Cdd:TIGR02169  508 ggRAVEEVLKASIQGVHGTVAQlgsvgeryATAIEVaagnRLNNVVVEDDAVAKEAIELLKRRKAgratfLPLNKMRDER 587

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  702 QNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAE---QEGKTALEQQKAAHEKEV 778
Cdd:TIGR02169  588 RDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEGelfEKSGAMTGGSRAPRGGIL 667

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  779 NQLREKWEKERSWHQ-QELAKALESLEREKMELEMRLKEQQTEMEAiqAQREEERTQAESALCQMQLETEKERVSLLETL 857
Cdd:TIGR02169  668 FSRSEPAELQRLRERlEGLKRELSSLQSELRRIENRLDELSQELSD--ASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  858 LQ-TQKELADASQQLERLRQDMKVQKLKEQEttgilqtqLQEAQRELKEAARQHRddLAALQEESSSLLQDKMDLQKQVE 936
Cdd:TIGR02169  746 LSsLEQEIENVKSELKELEARIEELEEDLHK--------LEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRIEARLR 815

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  937 DLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQD----- 1011
Cdd:TIGR02169  816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKErdele 895

                          650       660       670       680
                   ....*....|....*....|....*....|....*....|
gi 2217334293 1012 --MQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLLE 1049
Cdd:TIGR02169  896 aqLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 246-491 1.36e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 59.39  E-value: 1.36e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  246 LLLLLAKTQELEKEAHERSQELIQLKSQgdleKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTELME 325
Cdd:COG4942      8 ALLLALAAAAQADAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  326 HEASLSRNAQEEKLSLQQVIKDITQVMVEegdniAQGSGHENSLELdssIFSQFDYQDADKALTLVRSVLTRRRQAVQDL 405
Cdd:COG4942     84 ELAELEKEIAELRAELEAQKEELAELLRA-----LYRLGRQPPLAL---LLSPEDFLDAVRRLQYLKYLAPARREQAEEL 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  406 RQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQE 485
Cdd:COG4942    156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235


                   ....*.
gi 2217334293  486 AWRLRR 491
Cdd:COG4942    236 AAAAAE 241
PTZ00121 PTZ00121
MAEBL; Provisional
 427-976 1.51e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 60.54  E-value: 1.51e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  427 EEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKArEELRQQLEVLEQEAWRLRRVNVELQlQGDSAQGQ 506
Cdd:PTZ00121  1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA-DEAKKKAEEDKKKADELKKAAAAKK-KADEAKKK 1426

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  507 KEEqqeelhlaVRERERLQEMlmGLEAKQSESLSEliTLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENT 586
Cdd:PTZ00121  1427 AEE--------KKKADEAKKK--AEEAKKADEAKK--KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  587 LKTEVADLRAAA---VKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVlaRAVQEKEALVREKAA 663
Cdd:PTZ00121  1495 AKKKADEAKKAAeakKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL--KKAEEKKKAEEAKKA 1572

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  664 LEVRLQAVERdrqdlAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERS 743
Cdd:PTZ00121  1573 EEDKNMALRK-----AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  744 QAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKME-----LEMRLKEQQ 818
Cdd:PTZ00121  1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEekkkaEELKKAEEE 1727

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  819 TEMEAIQAQR--EEERTQAESA---------LCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQE 887
Cdd:PTZ00121  1728 NKIKAEEAKKeaEEDKKKAEEAkkdeeekkkIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNF 1807

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  888 TT----GILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRET 963
Cdd:PTZ00121  1808 ANiiegGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEA 1887

                          570
                   ....*....|....
gi 2217334293  964 QEYNRIQK-ELERE 976
Cdd:PTZ00121  1888 DEIEKIDKdDIERE 1901
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 280-992 1.55e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 60.52  E-value: 1.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  280 ELQDRVTELSALLTQSqkqNEDYEKMIKALRETVEILETNHTELMEHEASLSRNAQEEKLSlQQVIKDITQVMVEEGDni 359
Cdd:pfam15921   82 EYSHQVKDLQRRLNES---NELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQS-QEDLRNQLQNTVHELE-- 155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  360 AQGSGHENSLEldssifsqfdyqDADKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHD-----QWEEEGKALR 434
Cdd:pfam15921  156 AAKCLKEDMLE------------DSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDsmstmHFRSLGSAIS 223

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  435 QRLQKLTGERDTLAGQTVDLQGEVDSLSKERE-----LLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEE 509
Cdd:pfam15921  224 KILRELDTEISYLKGRIFPVEDQLEALKSESQnkielLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEI 303

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  510 QQEElhlAVRERERLQEMLMGLEAKQSESLSELITLREALESSHLEGE-LLRQEQTEVTAALARAEQSIAELSSSENTLK 588
Cdd:pfam15921  304 IQEQ---ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEkQLVLANSELTEARTERDQFSQESGNLDDQLQ 380

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  589 TEVADLRAAAVKLSALNE------------ALALDKvgLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEA 656
Cdd:pfam15921  381 KLLADLHKREKELSLEKEqnkrlwdrdtgnSITIDH--LRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNE 458

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  657 LVREKAALEVRLQAVERDRQDLAEQLQG----LSSAKELLESSLFEAQQQNSVIEVT-------KGQLEVQIQTVTQAK- 724
Cdd:pfam15921  459 SLEKVSSLTAQLESTKEMLRKVVEELTAkkmtLESSERTVSDLTASLQEKERAIEATnaeitklRSRVDLKLQELQHLKn 538

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  725 -----EVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTA--LEQQKAAHEKEVNqlrekwekERSWHQQELA 797
Cdd:pfam15921  539 egdhlRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAgaMQVEKAQLEKEIN--------DRRLELQEFK 610

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  798 KALESLEREKMELEMRLKEQQTEMEAIqaqreeerTQAESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQD 877
Cdd:pfam15921  611 ILKDKKDAKIRELEARVSDLELEKVKL--------VNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  878 MKVQKLKEQETTGILQTQLQEAQRELKeaarQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEV- 956
Cdd:pfam15921  683 FRNKSEEMETTTNKLKMQLKSAQSELE----QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMt 758

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....
gi 2217334293  957 ---QEKLRETQEYNRIQKEL-----EREKASLTLSLMEKEQRLL 992
Cdd:pfam15921  759 nanKEKHFLKEEKNKLSQELstvatEKNKMAGELEVLRSQERRL 802
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 796-1034 1.82e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 59.01  E-value: 1.82e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  796 LAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQlETEKERVSLLETLLQTQKELADASQQLERLR 875
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELAELE 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  876 QDMKVQKLKEQETTGILQTQLQEAQRelkeAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQE 955
Cdd:COG4942     90 KEIAELRAELEAQKEELAELLRALYR----LGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293  956 VQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVK 1034
Cdd:COG4942    166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 1413-2039 2.33e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 59.75  E-value: 2.33e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1413 EHLPMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENH-HK 1491
Cdd:pfam15921   74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTvHE 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1492 MECQQKLIKELEGQRETQRVALTHLTLDLEERSQEL--------QAQSSQIHDLESHSTV--------LARELQERDQEV 1555
Cdd:pfam15921  154 LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIrsilvdfeEASGKKIYEHDSMSTMhfrslgsaISKILRELDTEI 233

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1556 KSQREQIEELQRQKEHLTQDLERRdQELMLQKERIQVleDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEE 1635
Cdd:pfam15921  234 SYLKGRIFPVEDQLEALKSESQNK-IELLLQQHQDRI--EQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARN 310

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1636 GKGPSKAQRGSLEHMKLILRDKEKEVECQQEHIHElqelkdQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEARE 1715
Cdd:pfam15921  311 QNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIE------ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA 384

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1716 QGELKEQSLQSQLDEAQRaLAQRDQELEALQQEQQQAQGQEERVKEKADAL--------QGALEQAHMTLKERH------ 1781
Cdd:pfam15921  385 DLHKREKELSLEKEQNKR-LWDRDTGNSITIDHLRRELDDRNMEVQRLEALlkamksecQGQMERQMAAIQGKNeslekv 463

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1782 ----GELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCaeqaqeheVETRALQDSWLQAQAV 1857
Cdd:pfam15921  464 ssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEI--------TKLRSRVDLKLQELQH 535

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1858 LKERDQELEALRAESQSSRHQEEAARARAEALQEalgkahaALQGKEQHLLEQAELSRSLEASTATLQASLDACQAHSRQ 1937
Cdd:pfam15921  536 LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQ-------QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE 608

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1938 LEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRH----QQEREQLLEKSLAQRVQENMIQEKQNLGQEREEEEIR 2013
Cdd:pfam15921  609 FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSE 688

                          650       660
                   ....*....|....*....|....*.
gi 2217334293 2014 GLHQSVRELQLTLAQKEQEILELRET 2039
Cdd:pfam15921  689 EMETTTNKLKMQLKSAQSELEQTRNT 714
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1151-1380 3.00e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 58.24  E-value: 3.00e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1151 KRGPLLTALSAEAVASALHKLHQDLwktQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGK 1230
Cdd:COG4942      1 MRKLLLLALLLALAAAAQADAAAEA---EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1231 QNSLESELMELHETMASLQSRLRR---------AELQRMEAQGERELLQAAK---------ENLTAQVEHLQAAVVEARA 1292
Cdd:COG4942     78 LAALEAELAELEKEIAELRAELEAqkeelaellRALYRLGRQPPLALLLSPEdfldavrrlQYLKYLAPARREQAEELRA 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1293 QASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQgkaLQENLALLTQTLAEREEEVETLRGQIQELEK 1372
Cdd:COG4942    158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEA 234


                   ....*...
gi 2217334293 1373 QREMQKAA 1380
Cdd:COG4942    235 EAAAAAER 242
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1201-1425 3.11e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 58.24  E-value: 3.11e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1201 AEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQV 1280
Cdd:COG4942     20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1281 EHLQAAVVEARAQASAAGileedlRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEV 1360
Cdd:COG4942    100 EAQKEELAELLRALYRLG------RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1361 ETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKCRSVLEHLPMAVQEREQK 1425
Cdd:COG4942    174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
PTZ00121 PTZ00121
MAEBL; Provisional
 1187-1824 4.59e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 59.00  E-value: 4.59e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1187 DQVQKLEERLTDTEAEKSQVHTELQDLQR-QLSQNQEEKSKWEGKQNSLE-SELMELHETmaslqSRLRRAELQRmEAQG 1264
Cdd:PTZ00121  1137 EDARKAEEARKAEDAKRVEIARKAEDARKaEEARKAEDAKKAEAARKAEEvRKAEELRKA-----EDARKAEAAR-KAEE 1210

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1265 ERELLQAAKENLTAQVEHLQAaVVEARAQASAAGILEEDlRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQE 1344
Cdd:PTZ00121  1211 ERKAEEARKAEDAKKAEAVKK-AEEAKKDAEEAKKAEEE-RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1345 NLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELL--SLDLKKRNQEVDLQQE-QIQELEKCRSVLEHLPMAVQE 1421
Cdd:PTZ00121  1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKkkADAAKKKAEEAKKAAEaAKAEAEAAADEAEAAEEKAEA 1368

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1422 REQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLIKE 1501
Cdd:PTZ00121  1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1502 LEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQRE---QIEELQRQKEHLTQDLER 1578
Cdd:PTZ00121  1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEakkKADEAKKAEEAKKADEAK 1528

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1579 RDQELMLQKERIQVLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQrgslehMKLILRDKE 1658
Cdd:PTZ00121  1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR------IEEVMKLYE 1602

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1659 KEVECQQEHIHELQELKDQLEQQLQGlhRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRAlAQR 1738
Cdd:PTZ00121  1603 EEKKMKAEEAKKAEEAKIKAEELKKA--EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK-AEE 1679

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1739 DQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHK---EQARRLEEELAVEGRRVQALEEVLGDL 1815
Cdd:PTZ00121  1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKikaEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759


                   ....*....
gi 2217334293 1816 RAESREQEK 1824
Cdd:PTZ00121  1760 AHLKKEEEK 1768
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 251-601 8.02e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.14  E-value: 8.02e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  251 AKTQELEKEAHERSQELIQLKSQGDL---EKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTELMEHE 327
Cdd:TIGR02168  684 EKIEELEEKIAELEKALAELRKELEEleeELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  328 ASLSRNAQEEKLSLQQVIKDITQVMveegdniAQGSGHENSLELDSSIFSqfdyqDADKALTLVRSVLTRRRQAVQDLRQ 407
Cdd:TIGR02168  764 EELEERLEEAEEELAEAEAEIEELE-------AQIEQLKEELKALREALD-----ELRAELTLLNEEAANLRERLESLER 831

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  408 QLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQEAW 487
Cdd:TIGR02168  832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  488 RLRRVNVELQLQ-GDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALESshlegelLRQEQTEV 566
Cdd:TIGR02168  912 ELRRELEELREKlAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR-------LENKIKEL 984

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 2217334293  567 TAALARAEQSIAELSSSENTLKTEVADLRAAAVKL 601
Cdd:TIGR02168  985 GPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETL 1019
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
894-1091 8.37e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 58.00  E-value: 8.37e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  894 TQLQEAQRELKEAARQhRDDLAALQEESSSLLQDKMDLQKQvEDLKSQLVAQDDSQRLVEQEvQEKLRETQEYNRIQKEL 973
Cdd:COG4913    235 DDLERAHEALEDAREQ-IELLEPIRELAERYAAARERLAEL-EYLRAALRLWFAQRRLELLE-AELEELRAELARLEAEL 311

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  974 EREKASLTLSLMEKEQRLLVLQEADSIR----QQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLLE 1049
Cdd:COG4913    312 ERLEARLDALREELDELEAQIRGNGGDRleqlEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA 391

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 2217334293 1050 ELEASHITEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAA 1091
Cdd:COG4913    392 LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
541-1092 1.28e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 57.23  E-value: 1.28e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  541 ELITLREALESSHLEGELLRqEQTEVTAALARAEQSIAELSSSENTLKTEVADLRA--AAVKLSALNEALAldkvGLNQQ 618
Cdd:COG4913    229 ALVEHFDDLERAHEALEDAR-EQIELLEPIRELAERYAAARERLAELEYLRAALRLwfAQRRLELLEAELE----ELRAE 303

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  619 LLQSRHQQEAATTQLEQLHQEAKR-QEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLF 697
Cdd:COG4913    304 LARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFA 383

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  698 EAQQQnsvievtkgqlevqiqtVTQAKEVIQGEVRclklELDTERSQAEQERDAAARQLAQAEQEgKTALEQQKAAHEKE 777
Cdd:COG4913    384 ALRAE-----------------AAALLEALEEELE----ALEEALAEAEAALRDLRRELRELEAE-IASLERRKSNIPAR 441

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  778 VNQLREKW---------------------EKERSWH-----------------QQELAKALESLEREKMELEMRLKEQQT 819
Cdd:COG4913    442 LLALRDALaealgldeaelpfvgelievrPEEERWRgaiervlggfaltllvpPEHYAAALRWVNRLHLRGRLVYERVRT 521

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  820 EMEAIQAQREEERTQAEsalcqmQLETEKERVS-LLETLLQTQKELA--DASQQLERLRQDMKVQ-KLKEQETTGILQTQ 895
Cdd:COG4913    522 GLPDPERPRLDPDSLAG------KLDFKPHPFRaWLEAELGRRFDYVcvDSPEELRRHPRAITRAgQVKGNGTRHEKDDR 595

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  896 LQEAQREL--KEAARQhrddLAALQEESSSLLQDKMDLQKQVEDLKSQLvAQDDSQRLVEQEVQEKLRETQEYNRIQKE- 972
Cdd:COG4913    596 RRIRSRYVlgFDNRAK----LAALEAELAELEEELAEAEERLEALEAEL-DALQERREALQRLAEYSWDEIDVASAEREi 670

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  973 --LEREKASLTLS---LMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQL 1047
Cdd:COG4913    671 aeLEAELERLDASsddLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*
gi 2217334293 1048 LEELEASHITEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAAE 1092
Cdd:COG4913    751 LEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1271-1822 1.56e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 57.00  E-value: 1.56e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1271 AAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLT 1350
Cdd:PRK03918   186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELE 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1351 QTLAEREEEVETLRGQIQELEKQREMQKAALELlsldlkkrNQEVDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQR 1430
Cdd:PRK03918   266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKL--------SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1431 EQIRELEKDRETQRNVLEhQLLELEKKDQMIESQRGQVQDLKKQLVTLEclaleleenhhkMECQQKLIKELEGQRETQR 1510
Cdd:PRK03918   338 ERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTGLT------------PEKLEKELEELEKAKEEIE 404

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1511 VALTHLTL---DLEERSQELQAQSSQIHDLESHSTVLARELQERDQ---------EVKSQREQIEELQRQKEHLTQDLER 1578
Cdd:PRK03918   405 EEISKITArigELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRkelleeytaELKRIEKELKEIEEKERKLRKELRE 484

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1579 RDQELMLQKERIQVLEdqRTRQTKILEEDLEQIKLslrERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKE 1658
Cdd:PRK03918   485 LEKVLKKESELIKLKE--LAEQLKELEEKLKKYNL---EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1659 KEVECQQEHIHELQELKDQLE--------------QQLQGLHRKVGETSLL---LSQREQEIVVLQQQLQEAREQGELKE 1721
Cdd:PRK03918   560 ELEKKLDELEEELAELLKELEelgfesveeleerlKELEPFYNEYLELKDAekeLEREEKELKKLEEELDKAFEELAETE 639

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1722 ---QSLQSQLDEAQRALAQRDqeLEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEE-E 1797
Cdd:PRK03918   640 krlEELRKELEELEKKYSEEE--YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKlE 717

                          570       580
                   ....*....|....*....|....*
gi 2217334293 1798 LAVEgrRVQALEEVLGDLRAESREQ 1822
Cdd:PRK03918   718 KALE--RVEELREKVKKYKALLKER 740
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 778-1089 1.73e-07

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 56.67  E-value: 1.73e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  778 VNQLREKWEKERSWHQQELAKALESLEREKMELEMrlKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETL 857
Cdd:pfam17380  271 LNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEK--EEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERER 348

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  858 LQTQKELADASQQLERLRQD---MKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQ 934
Cdd:pfam17380  349 ELERIRQEERKRELERIRQEeiaMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  935 VEDLKSQLVA--QDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDM 1012
Cdd:pfam17380  429 QEEARQREVRrlEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAM 508

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217334293 1013 QEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLLE-ELEASHITEQQLRaslwaqeaKAAQLQLRLRSTESQLEAL 1089
Cdd:pfam17380  509 IEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQqEMEERRRIQEQMR--------KATEERSRLEAMEREREMM 578
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 624-1374 1.74e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 57.00  E-value: 1.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  624 HQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAE--------QLQGLSSAKELLESS 695
Cdd:TIGR02169  230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlrvkeKIGELEAEIASLERS 309

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  696 LFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELD---TERSQAEQERDAAARQLAQAEQEGKTALEQQKA 772
Cdd:TIGR02169  310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  773 AHEK--EVNQLREKWEKERSWHQQELAKALESLEREKMEL---EMRLKEQQTEMEAIQAQREEERTQAESALCQMQLEtE 847
Cdd:TIGR02169  390 YREKleKLKREINELKRELDRLQEELQRLSEELADLNAAIagiEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY-E 468

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  848 KERVSLLETLLQTQKELADASQQLERL-----------RQDMKVQKLKEQETTGILQT--QLQEAQRE------------ 902
Cdd:TIGR02169  469 QELYDLKEEYDRVEKELSKLQRELAEAeaqaraseervRGGRAVEEVLKASIQGVHGTvaQLGSVGERyataievaagnr 548

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  903 -------------------------------LKEAARQHRDDLAALQEESSSLLQDKMDLQKQVED-----LKSQLVAQD 946
Cdd:TIGR02169  549 lnnvvveddavakeaiellkrrkagratflpLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvFGDTLVVED 628

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  947 --------DSQRLV--EQEVQEK---------------------LRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQ 995
Cdd:TIGR02169  629 ieaarrlmGKYRMVtlEGELFEKsgamtggsraprggilfsrsePAELQRLRERLEGLKRELSSLQSELRRIENRLDELS 708

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  996 EADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEadflaqeaqllEELEASHITEQQLRASLWAQEAKAAQL 1075
Cdd:TIGR02169  709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE-----------QEIENVKSELKELEARIEELEEDLHKL 777

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1076 QLRLRSTESQLealaaeqqpgnqaqaqaqLASLYSALQQALGSVCESRPELSGggdsapsvwglepdqngarslfkrgpl 1155
Cdd:TIGR02169  778 EEALNDLEARL------------------SHSRIPEIQAELSKLEEEVSRIEA--------------------------- 812

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1156 ltalSAEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLE 1235
Cdd:TIGR02169  813 ----RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1236 SELMELHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEdlrtarsaLKLKN 1315
Cdd:TIGR02169  889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED--------VQAEL 960

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1316 EEVEserERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQR 1374
Cdd:TIGR02169  961 QRVE---EEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 632-1263 2.74e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 56.28  E-value: 2.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  632 QLEQLHQEAKRQEEVLARAVQEK-EALVREKaalEVRLQAVERDRQDLAEQLQGLSSAKELLESslfEAQQQNSV----- 705
Cdd:pfam15921  246 QLEALKSESQNKIELLLQQHQDRiEQLISEH---EVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQNSMymrql 319

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  706 --IEVTKGQLEVQIQtvtQAKEVIQGEVRCLKLEL---DTERSQAEQERDAAARQLAQAEQEGKTALEQqkaAHEKEVNQ 780
Cdd:pfam15921  320 sdLESTVSQLRSELR---EAKRMYEDKIEELEKQLvlaNSELTEARTERDQFSQESGNLDDQLQKLLAD---LHKREKEL 393

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  781 LREKWEKERSWhQQELAKALeSLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEK-ERVSLLETLLQ 859
Cdd:pfam15921  394 SLEKEQNKRLW-DRDTGNSI-TIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESlEKVSSLTAQLE 471

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  860 TQKELadasqqLERLRQDMKVQKL---KEQETTGILQTQLQEAQRELKEAARQ-----HRDDLAALQEESSSLLQDKM-D 930
Cdd:pfam15921  472 STKEM------LRKVVEELTAKKMtleSSERTVSDLTASLQEKERAIEATNAEitklrSRVDLKLQELQHLKNEGDHLrN 545

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  931 LQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKE---QRLLVLQEADSIRQQELSA 1007
Cdd:pfam15921  546 VQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRlelQEFKILKDKKDAKIRELEA 625

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1008 LRQDMQEAQgeQKELSAQMELLR--QEVKEKEADFLAQEAQLLEEL----EASHITEQQLRASLWAQEAKAAQLQLRLRS 1081
Cdd:pfam15921  626 RVSDLELEK--VKLVNAGSERLRavKDIKQERDQLLNEVKTSRNELnslsEDYEVLKRNFRNKSEEMETTTNKLKMQLKS 703

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1082 TESQLEalaaeqqpgnqaqaqaqlaslysalqqalgsvcESRPELSGggdsapsvwglepdqngarslfkrgplLTALSA 1161
Cdd:pfam15921  704 AQSELE---------------------------------QTRNTLKS---------------------------MEGSDG 723

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1162 EAVASALHKLHQDLWKTQQTrDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMEL 1241
Cdd:pfam15921  724 HAMKVAMGMQKQITAKRGQI-DALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRL 802

                          650       660
                   ....*....|....*....|..
gi 2217334293 1242 HETMASLQSRLRRAELQRMEAQ 1263
Cdd:pfam15921  803 KEKVANMEVALDKASLQFAECQ 824
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 627-1057 2.82e-07

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 56.27  E-value: 2.82e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  627 EAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQ-------AVERDRQDLAEQLQGLSSAKELLESSLFEA 699
Cdd:pfam05483  264 EESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQrsmstqkALEEDLQIATKTICQLTEEKEAQMEELNKA 343

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  700 QQQNSVI----EVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHE 775
Cdd:pfam05483  344 KAAHSFVvtefEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDE 423

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  776 kevNQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLE 855
Cdd:pfam05483  424 ---KKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLE 500

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  856 TLLQTQkELADASQQLERLRQDMKVQKLKEQETTGILQTqlqeaqreLKEAARQHRDDLAALQEEsssllqdkmdLQKQV 935
Cdd:pfam05483  501 NKELTQ-EASDMTLELKKHQEDIINCKKQEERMLKQIEN--------LEEKEMNLRDELESVREE----------FIQKG 561

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  936 EDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEA 1015
Cdd:pfam05483  562 DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKL 641

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|..
gi 2217334293 1016 QGEQKELSAQMELLRQEVKEKEADFLAQEAQLLEELEASHIT 1057
Cdd:pfam05483  642 ELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAI 683
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 519-862 2.88e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 56.23  E-value: 2.88e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  519 RERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAA 598
Cdd:TIGR02169  688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  599 VKLSALNEALALDKVGLNQQLLQSRHQQeaATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDL 678
Cdd:TIGR02169  768 EELEEDLHKLEEALNDLEARLSHSRIPE--IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  679 AEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQ 758
Cdd:TIGR02169  846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  759 AEqegktALEQQKAAHEKEVNQLREKWEKERSWHQqeLAKALESLEREKMELEmrlkeqQTEMEAIQAQREEERTQAESA 838
Cdd:TIGR02169  926 LE-----ALEEELSEIEDPKGEDEEIPEEELSLED--VQAELQRVEEEIRALE------PVNMLAIQEYEEVLKRLDELK 992

                          330       340
                   ....*....|....*....|....
gi 2217334293  839 LCQMQLETEKERVSLLETLLQTQK 862
Cdd:TIGR02169  993 EKRAKLEEERKAILERIEEYEKKK 1016
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
395-1016 2.92e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 56.08  E-value: 2.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  395 LTRRRQAVQDLRQQLAGCQEAVNLL-----QQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKER---- 465
Cdd:COG4913    257 IRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIrgng 336

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  466 -ELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELIT 544
Cdd:COG4913    337 gDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD 416

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  545 LREALESSHLEGELLRQEQTEVTAALARAEQSIAELsssentLKTEVADLRAAA--VKLSALNEA--LALDKV--GLNQQ 618
Cdd:COG4913    417 LRRELRELEAEIASLERRKSNIPARLLALRDALAEA------LGLDEAELPFVGelIEVRPEEERwrGAIERVlgGFALT 490

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  619 LLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESslfE 698
Cdd:COG4913    491 LLVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFDYVCVDS---P 567

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  699 AQQQNSVIEVTK-GQL-------EVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKtALEQQ 770
Cdd:COG4913    568 EELRRHPRAITRaGQVkgngtrhEKDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELD-ALQER 646

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  771 KAAHEkevnQLREKWEKERSWhqQELAKALESLEREKMELEmrlkEQQTEMEAIQAQREEERTQAEsalcqmqlETEKER 850
Cdd:COG4913    647 REALQ----RLAEYSWDEIDV--ASAEREIAELEAELERLD----ASSDDLAALEEQLEELEAELE--------ELEEEL 708

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  851 VSLLETLLQTQKELADASQQLERLRQDM-KVQKLKEQETTGILQTQLQEAQRElkEAARQHRDDLAALQEESSSLLQdkm 929
Cdd:COG4913    709 DELKGEIGRLEKELEQAEEELDELQDRLeAAEDLARLELRALLEERFAAALGD--AVERELRENLEERIDALRARLN--- 783

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  930 DLQKQVEDLKSQLVAQDDSQRlveQEVQEKLRETQEYNRIQKELEREKasltlsLMEKEQRLLVLQEADSIRQQE--LSA 1007
Cdd:COG4913    784 RAEEELERAMRAFNREWPAET---ADLDADLESLPEYLALLDRLEEDG------LPEYEERFKELLNENSIEFVAdlLSK 854


                   ....*....
gi 2217334293 1008 LRQDMQEAQ 1016
Cdd:COG4913    855 LRRAIREIK 863
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 1202-1739 3.18e-07

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 55.88  E-value: 3.18e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1202 EKSQVHTELQD-LQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRaELQRMEAQGERELLQAAKENltAQV 1280
Cdd:pfam05483  180 ETRQVYMDLNNnIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKK-EINDKEKQVSLLLIQITEKE--NKM 256

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1281 EHLQAAVVEARAQASAagiLEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEV 1360
Cdd:pfam05483  257 KDLTFLLEESRDKANQ---LEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEK 333

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1361 ETlrgQIQELEKQREMQkaALELLSLDLKKRNQEVDLQQEQiQELEKCRSVLEHLPMAVQEREQKLtvqrEQIRELEKDR 1440
Cdd:pfam05483  334 EA---QMEELNKAKAAH--SFVVTEFEATTCSLEELLRTEQ-QRLEKNEDQLKIITMELQKKSSEL----EEMTKFKNNK 403

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1441 ETQRNVLEHQLLElekkDQMIESQRGQVQDLKKQLVTLECLALELeenhhkMECQQKLIKELEGQRETQRVALTHLTLDL 1520
Cdd:pfam05483  404 EVELEELKKILAE----DEKLLDEKKQFEKIAEELKGKEQELIFL------LQAREKEIHDLEIQLTAIKTSEEHYLKEV 473

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1521 EERSQELQAQSSQIHDLESHSTVLARELQERDQEVKsqrEQIEELQRQKEHLTQDleRRDQELMLQKerIQVLEDQRTRq 1600
Cdd:pfam05483  474 EDLKTELEKEKLKNIELTAHCDKLLLENKELTQEAS---DMTLELKKHQEDIINC--KKQEERMLKQ--IENLEEKEMN- 545

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1601 tkiLEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEVECQQEHIHELQELKDQLEQ 1680
Cdd:pfam05483  546 ---LRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKK 622

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217334293 1681 QLQGLHRKVGETSLLLSQREQEIVVLQQQLQEA----REQGELKEQSLQSQLDEAQRALAQRD 1739
Cdd:pfam05483  623 KGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAIAD 685
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1166-1617 3.96e-07

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 55.41  E-value: 3.96e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1166 SALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEE----KSKWEGKQNSLE---SEL 1238
Cdd:TIGR04523  197 LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQlnqlKDEQNKIKKQLSekqKEL 276

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1239 MELHETMASLQSRLR--RAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALK-LKN 1315
Cdd:TIGR04523  277 EQNNKKIKELEKQLNqlKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTnSES 356

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1316 EEVESERERAQALQEQGELKVAQGKALQENLALLTQTlAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEV 1395
Cdd:TIGR04523  357 ENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQI-NDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1396 DLQQEQIQELEKCRSVLEhlpMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQL 1475
Cdd:TIGR04523  436 IKNNSEIKDLTNQDSVKE---LIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1476 VTLECLALELEENHHKMECQ----QKLIKELEGQRETQRVALTHltLDLEERSQELQAQSSQIHD----LESHSTVLARE 1547
Cdd:TIGR04523  513 KDLTKKISSLKEKIEKLESEkkekESKISDLEDELNKDDFELKK--ENLEKEIDEKNKEIEELKQtqksLKKKQEEKQEL 590

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1548 LQERDQEVKSQREQIEELQRQKEHLTQDLERRDQElmlqKERIQVLEDQRTRQTKILEEDLEQIKLSLRE 1617
Cdd:TIGR04523  591 IDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE----NEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 783-1439 4.66e-07

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 55.61  E-value: 4.66e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  783 EKWEKERSWHQQELAKaLESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQK 862
Cdd:pfam12128  244 TKLQQEFNTLESAELR-LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRS 322

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  863 ELADASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLlqdKMDLQKQVEDLKSQL 942
Cdd:pfam12128  323 ELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKI---KEQNNRDIAGIKDKL 399

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  943 VAQDdsqrlvEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLlvlqeadSIRQQELSALRQDMQEAQGEQKEL 1022
Cdd:pfam12128  400 AKIR------EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRL-------KSRLGELKLRLNQATATPELLLQL 466

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1023 SAQMELLRQEVKEKEADFLAQEAQLLEELEASHITEQQLRAsLWAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQ 1102
Cdd:pfam12128  467 ENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEA-LRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAP 545

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1103 AQLASLYSALQqalgsvcesrPELSGGGDSAPSVWGLEPdqNGARSLFKRGPLLTALSAEAVASALHKLHQDLWKTQQTR 1182
Cdd:pfam12128  546 DWEQSIGKVIS----------PELLHRTDLDPEVWDGSV--GGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEAL 613

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1183 DVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELME-LHETMASLQSRLRR--AELQR 1259
Cdd:pfam12128  614 QSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKaLAERKDSANERLNSleAQLKQ 693

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1260 MEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQG 1339
Cdd:pfam12128  694 LDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKL 773

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1340 KALQENLALLTQTLAEREEEV--------ETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLqqeQIQELEKCRSV 1411
Cdd:pfam12128  774 KREIRTLERKIERIAVRRQEVlryfdwyqETWLQRRPRLATQLSNIERAISELQQQLARLIADTKL---RRAKLEMERKA 850

                          650       660
                   ....*....|....*....|....*...
gi 2217334293 1412 LEHLPMAVQEREQKLTVQREQIRELEKD 1439
Cdd:pfam12128  851 SEKQQVRLSENLRGLRCEMSKLATLKED 878
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1314-1826 6.76e-07

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 54.64  E-value: 6.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1314 KNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQ 1393
Cdd:TIGR04523   31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINS 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1394 EVDLQQEQIQELEKCRSVLEHlpmAVQEREQKLTVQREQIRELEKDRE---TQRNVLEHQLLELEKKDQMIESQRGQVQ- 1469
Cdd:TIGR04523  111 EIKNDKEQKNKLEVELNKLEK---QKKENKKNIDKFLTEIKKKEKELEklnNKYNDLKKQKEELENELNLLEKEKLNIQk 187

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1470 ---DLKKQLVTLECLALELEENHHKMECQQKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLAR 1546
Cdd:TIGR04523  188 nidKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1547 ELQERDQEVKSQREQIEELQRQKEHLTQDLERrdqelmLQKERIQVLedqrtrqTKILEEDLEQIKLSLRERGRELTTQR 1626
Cdd:TIGR04523  268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISD------LNNQKEQDW-------NKELKSELKNQEKKLEEIQNQISQNN 334

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1627 QLMQERAEEGKGPSKAQRGSLEHMKLI---LRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEI 1703
Cdd:TIGR04523  335 KIISQLNEQISQLKKELTNSESENSEKqreLEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQI 414

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1704 VVLQQQLQE-AREQGELKEQ--SLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKER 1780
Cdd:TIGR04523  415 KKLQQEKELlEKEIERLKETiiKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSK 494

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*.
gi 2217334293 1781 HGELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKAL 1826
Cdd:TIGR04523  495 EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 395-609 7.66e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 54.00  E-value: 7.66e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  395 LTRRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREE 474
Cdd:COG4942     22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  475 LRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALESSHL 554
Cdd:COG4942    102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293  555 EgelLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALA 609
Cdd:COG4942    182 E---LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 405-1035 8.27e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 54.69  E-value: 8.27e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  405 LRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQ 484
Cdd:TIGR02169  306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  485 EAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALESShlEGEL------ 558
Cdd:TIGR02169  386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ--EWKLeqlaad 463

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  559 ----------LRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALaldkVGLNQQLLQSRHQ--- 625
Cdd:TIGR02169  464 lskyeqelydLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGV----HGTVAQLGSVGERyat 539

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  626 --QEAATTQLEQLHQE----AKRQEEVLA---------------RAVQEKEALVREKAALEVRLQAVERDRQ-------- 676
Cdd:TIGR02169  540 aiEVAAGNRLNNVVVEddavAKEAIELLKrrkagratflplnkmRDERRDLSILSEDGVIGFAVDLVEFDPKyepafkyv 619

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  677 ----------DLAEQLQG----LSSAKELLESS--LFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLEL-- 738
Cdd:TIGR02169  620 fgdtlvvediEAARRLMGkyrmVTLEGELFEKSgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELrr 699

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  739 -DTERSQAEQERDAAARQLAQAEQEGKtALEQQKAAHEKEVNQLREKwekerswhQQELAKALESLEREKMELEMRLKEQ 817
Cdd:TIGR02169  700 iENRLDELSQELSDASRKIGEIEKEIE-QLEQEEEKLKERLEELEED--------LSSLEQEIENVKSELKELEARIEEL 770

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  818 QTEMEAIQAQREE-ERTQAESALCQMQLET---EKERVSL----------LETLLQTQKELADASQQLERLRQDMKVQKL 883
Cdd:TIGR02169  771 EEDLHKLEEALNDlEARLSHSRIPEIQAELsklEEEVSRIearlreieqkLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  884 KEQETTGILQTQLQEAQRELKEAA---RQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKL 960
Cdd:TIGR02169  851 SIEKEIENLNGKKEELEEELEELEaalRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930

                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293  961 RETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALrQDMQEAQGEQKELSAQMELLRQEVKE 1035
Cdd:TIGR02169  931 EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAI-QEYEEVLKRLDELKEKRAKLEEERKA 1004
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 418-1073 8.57e-07

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 54.59  E-value: 8.57e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  418 LLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQ 497
Cdd:pfam02463  304 KLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES 383

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  498 LQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLE----AKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARA 573
Cdd:pfam02463  384 ERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEdllkEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD 463

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  574 EQSIAELSSSENTLKT-----------------EVADLRAAAVKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQL 636
Cdd:pfam02463  464 ELELKKSEDLLKETQLvklqeqlelllsrqkleERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKV 543

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  637 HQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQ 716
Cdd:pfam02463  544 AISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAK 623

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  717 IQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEgktaLEQQKAAHEKEVNQLREKWEKERSWHQQEL 796
Cdd:pfam02463  624 VVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLS----ELTKELLEIQELQEKAESELAKEEILRRQL 699

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  797 AKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQ 876
Cdd:pfam02463  700 EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEE 779

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  877 DMKVQKLKEQETtgiLQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEV 956
Cdd:pfam02463  780 REKTEKLKVEEE---KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL 856

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  957 QEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEK 1036
Cdd:pfam02463  857 ERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEE 936

                          650       660       670
                   ....*....|....*....|....*....|....*..
gi 2217334293 1037 EADFLAQEAQLLEELEASHITEQQLRASLWAQEAKAA 1073
Cdd:pfam02463  937 PEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELG 973
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1495-1738 8.59e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 53.61  E-value: 8.59e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1495 QQKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQ 1574
Cdd:COG4942     18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1575 DLERRDQELMLQKERIQVLEDQRTRQTKILEEDLEQIklslrerGRELTTQRQLMQERAEEGKGpskaqrgsLEHMKLIL 1654
Cdd:COG4942     98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDA-------VRRLQYLKYLAPARREQAEE--------LRADLAEL 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1655 RDKEKEVECQQEhihELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQgelkEQSLQSQLDEAQRA 1734
Cdd:COG4942    163 AALRAELEAERA---ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE----AEELEALIARLEAE 235


                   ....
gi 2217334293 1735 LAQR 1738
Cdd:COG4942    236 AAAA 239
PTZ00121 PTZ00121
MAEBL; Provisional
 1547-2143 9.62e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 54.76  E-value: 9.62e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1547 ELQERDQEVKSQRE--QIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQTKileEDLEQIKLSLRERGRELTT 1624
Cdd:PTZ00121  1179 EAARKAEEVRKAEElrKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK---KDAEEAKKAEEERNNEEIR 1255

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1625 QRQ--LMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEVECQQEHIHELQELKDQLEQQlqglhRKVGETSLLLSQREQE 1702
Cdd:PTZ00121  1256 KFEeaRMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA-----KKADEAKKKAEEAKKK 1330

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1703 IVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKE--KADALQGALEQAHMT---L 1777
Cdd:PTZ00121  1331 ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkKADEAKKKAEEDKKKadeL 1410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1778 KERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQEHEV-----ETRALQDSWL 1852
Cdd:PTZ00121  1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAkkkaeEAKKADEAKK 1490

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1853 QAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHLLEQAELSRSLEASTATLQASLDACQ 1932
Cdd:PTZ00121  1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK 1570

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1933 AHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQE--------REQLLEKSLAQRVQENMIQEKQNLG 2004
Cdd:PTZ00121  1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEakikaeelKKAEEEKKKVEQLKKKEAEEKKKAE 1650

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2005 QEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEEQSLKLDSLEPR----LQRELERLQA 2080
Cdd:PTZ00121  1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKkaeeLKKAEEENKI 1730

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 2081 ALRQTEAREIEWREKAQDLAL------SLAQTKASVSSLQEVAMFLQASVLERDSEQQRLQDELELTRR 2143
Cdd:PTZ00121  1731 KAEEAKKEAEEDKKKAEEAKKdeeekkKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 755-1038 1.08e-06

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 53.97  E-value: 1.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  755 QLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREK---MELEMRLKEQQTEMeAIQAQREEE 831
Cdd:pfam17380  273 QLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARqaeMDRQAAIYAEQERM-AMERERELE 351

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  832 RTQAESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQDMKV---QKLKEQETTGILQTQLQEAQRELKEAAR 908
Cdd:pfam17380  352 RIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAarkVKILEEERQRKIQQQKVEMEQIRAEQEE 431

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  909 QHRDDLAALQEESSSLL----QDKMDLQKQVEDLKSQ------------------LVAQDDSQRLVEQEVQEKLRETQEY 966
Cdd:pfam17380  432 ARQREVRRLEEERAREMervrLEEQERQQQVERLRQQeeerkrkklelekekrdrKRAEEQRRKILEKELEERKQAMIEE 511

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217334293  967 NRIQKELEREKASLTLSLMEKEQRLLVLQE-ADSIRQQELSALRQDMQEAQGEQKELSA---QMELLRQEVKEKEA 1038
Cdd:pfam17380  512 ERKRKLLEKEMEERQKAIYEEERRREAEEErRKQQEMEERRRIQEQMRKATEERSRLEAmerEREMMRQIVESEKA 587
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 737-858 1.09e-06

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 54.32  E-value: 1.09e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  737 ELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQ--QELAKALESLEREKMELEMRL 814
Cdd:COG0542    415 ELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEeiQELKEELEQRYGKIPELEKEL 494

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2217334293  815 KEQQTEMEAIQAQREEERTQAESA----------LCQMqLETEKERVSLLETLL 858
Cdd:COG0542    495 AELEEELAELAPLLREEVTEEDIAevvsrwtgipVGKL-LEGEREKLLNLEEEL 547
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1319-2149 1.25e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 54.30  E-value: 1.25e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1319 ESERERAQALQEQGELKvaqgkalqENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQ 1398
Cdd:TIGR02169  167 EFDRKKEKALEELEEVE--------ENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQ 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1399 QEQI--------QELEKCRSVLEHLPMAVQEREQKLTVQREQIRELEKDRETQrnvLEHQLLELEKKdqmIESQRGQVQD 1470
Cdd:TIGR02169  239 KEAIerqlasleEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR---VKEKIGELEAE---IASLERSIAE 312

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1471 LKKQLVTLECLALELEENHHKMECQqklIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQE 1550
Cdd:TIGR02169  313 KERELEDAEERLAKLEAEIDKLLAE---IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1551 RDQEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRqtkiLEEDLEQIKLSLRERGRELTTQRQLMQ 1630
Cdd:TIGR02169  390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE----LEEEKEDKALEIKKQEWKLEQLAADLS 465

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1631 ERAEEgkgpskaqrgslehmkliLRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGE---TSLLLSQREQEIVVLQ 1707
Cdd:TIGR02169  466 KYEQE------------------LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGgraVEEVLKASIQGVHGTV 527

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1708 QQLQEAREQGELK-EQSLQSQLD--------EAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAhMTLK 1778
Cdd:TIGR02169  528 AQLGSVGERYATAiEVAAGNRLNnvvveddaVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFA-VDLV 606

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1779 E-------------RHGELQDHKEQARR---------LEEEL----------AVEGRRVQALEEVLGDLRAESREQEKAL 1826
Cdd:TIGR02169  607 EfdpkyepafkyvfGDTLVVEDIEAARRlmgkyrmvtLEGELfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGL 686

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1827 LALQQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQH 1906
Cdd:TIGR02169  687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1907 LLEQAELSRSLEASTATLQASLDacQAHSRQLEEALRIQEGEIQDQDLRYQEdvqqlqqalaqRDEELRHQQEREQLLEK 1986
Cdd:TIGR02169  767 IEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLRE-----------IEQKLNRLTLEKEYLEK 833

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1987 SLAQRVQENMIQEKQNLGQEREEEEIRGlhqSVRELQLTLAQKEQEILELRE-----TQQRNNLEAlPHSHKTSPMEEQS 2061
Cdd:TIGR02169  834 EIQELQEQRIDLKEQIKSIEKEIENLNG---KKEELEEELEELEAALRDLESrlgdlKKERDELEA-QLRELERKIEELE 909

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2062 LKLDSLEPRLQRELERLQAALRQTEAREIEWRE---------KAQDLALSLAQTKASVSSLQEVAMflqASVLERDSEQQ 2132
Cdd:TIGR02169  910 AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEdeeipeeelSLEDVQAELQRVEEEIRALEPVNM---LAIQEYEEVLK 986

                          890
                   ....*....|....*..
gi 2217334293 2133 RLqDELELTRRALEKER 2149
Cdd:TIGR02169  987 RL-DELKEKRAKLEEER 1002
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1162-1634 1.99e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 53.51  E-value: 1.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1162 EAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEekskwegkqnslesELMEL 1241
Cdd:PRK02224   324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE--------------EIEEL 389

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1242 HETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAavvearaqasaagileeDLRTARSALklkneevese 1321
Cdd:PRK02224   390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA-----------------TLRTARERV---------- 442

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1322 rERAQALQEQGELKVAqGKALQEnlALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSlDLKKRNQEVDLQQEQ 1401
Cdd:PRK02224   443 -EEAEALLEAGKCPEC-GQPVEG--SPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEER 517

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1402 IQELEKcrsVLEHLPMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLvtlecl 1481
Cdd:PRK02224   518 REDLEE---LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI------ 588

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1482 aleleENHHKMECQQKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLEShstvlarELQE-RDQEVKSQRE 1560
Cdd:PRK02224   589 -----ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEA-------EFDEaRIEEAREDKE 656

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217334293 1561 QIEELQRQKEHLTQDLERRDQELMLQ----KERIQVLEDQRTRQtKILEEDLEQIKlSLRERGRELttQRQLMQERAE 1634
Cdd:PRK02224   657 RAEEYLEQVEEKLDELREERDDLQAEigavENELEELEELRERR-EALENRVEALE-ALYDEAEEL--ESMYGDLRAE 730
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1185-1779 2.00e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 53.10  E-value: 2.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1185 LRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQG 1264
Cdd:TIGR04523  122 LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1265 ERELLQAAKEN---LTAQVEHLQAAVVEaraqasaagiLEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKA 1341
Cdd:TIGR04523  202 LLSNLKKKIQKnksLESQISELKKQNNQ----------LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE 271

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1342 LQENLALLTQTLAEREEEVETLRGQIQELEKQREmqkaalELLSLDLKKrnqEVDLQQEQIQELEKcrsvlehlpmAVQE 1421
Cdd:TIGR04523  272 KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE------QDWNKELKS---ELKNQEKKLEEIQN----------QISQ 332

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1422 REQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEEnhhKMECQQKLIKE 1501
Cdd:TIGR04523  333 NNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLES---KIQNQEKLNQQ 409

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1502 LEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQ 1581
Cdd:TIGR04523  410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1582 ELMLQKERIQVLedqrTRQTKILEEDLEQIKlslRERGRELTTQRQLMQERAEegkgpskaqrgslehMKLILRDKEKEV 1661
Cdd:TIGR04523  490 ELKSKEKELKKL----NEEKKELEEKVKDLT---KKISSLKEKIEKLESEKKE---------------KESKISDLEDEL 547

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1662 ECQQEHIHelqelKDQLEQQLQGLHRKVGEtsllLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQE 1741
Cdd:TIGR04523  548 NKDDFELK-----KENLEKEIDEKNKEIEE----LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618

                          570       580       590
                   ....*....|....*....|....*....|....*...
gi 2217334293 1742 LEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKE 1779
Cdd:TIGR04523  619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1559-1914 2.22e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 53.14  E-value: 2.22e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1559 REQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQTKILEedleqIKLSLRERGRELTTQRQlmqERAEEGKG 1638
Cdd:TIGR02168  171 KERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE-----LKAELRELELALLVLRL---EELREELE 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1639 PSKAQRGSLEHMKLILRDKEKEVECQ-QEHIHELQELKDQLEQQLQGLHRKVGETSLLlSQREQEIVVLQQQLQEAREQG 1717
Cdd:TIGR02168  243 ELQEELKEAEEELEELTAELQELEEKlEELRLEVSELEEEIEELQKELYALANEISRL-EQQKQILRERLANLERQLEEL 321

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1718 ELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEE 1797
Cdd:TIGR02168  322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1798 LAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQA-QEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSR 1876
Cdd:TIGR02168  402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481

                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 2217334293 1877 HQEEAARARAEALQEALGKAHAALQGKEQHLLEQAELS 1914
Cdd:TIGR02168  482 RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1168-1828 2.49e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.00  E-value: 2.49e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1168 LHKLHQDLWKTQQTRDVLR------DQVQKLEERLTDTEAEKSQVhtELQDLQRQLSQNQEEKSKWEGKQNSLESELMEL 1241
Cdd:COG4913    237 LERAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1242 HETMASLQSRLRRAELQRMEAQGERellqaaKENLTAQVEHLQAavvEARAQASAAGILEEDLRTARSALKLKNEEVESE 1321
Cdd:COG4913    315 EARLDALREELDELEAQIRGNGGDR------LEQLEREIERLER---ELEERERRRARLEALLAALGLPLPASAEEFAAL 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1322 RERAQALQEQGElkvAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQR----EMQKAALELLSLDLKKRNQEVDL 1397
Cdd:COG4913    386 RAEAAALLEALE---EELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAEALGLDEAELPF 462

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1398 QQEQIQELEKCRS-------VL-----------EHLPMA---VQEREQKLTVQREQIRELEKDRETQRnVLEHQLLElek 1456
Cdd:COG4913    463 VGELIEVRPEEERwrgaierVLggfaltllvppEHYAAAlrwVNRLHLRGRLVYERVRTGLPDPERPR-LDPDSLAG--- 538

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1457 kdqMIESQRGQVQDLKKQLVtleclalELEENHHKMECQQKLikelegqRETQRvALThltldleersqeLQAQSSQIHD 1536
Cdd:COG4913    539 ---KLDFKPHPFRAWLEAEL-------GRRFDYVCVDSPEEL-------RRHPR-AIT------------RAGQVKGNGT 588

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1537 LESHSTvlARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQTKILEEDLEQIKLSLR 1616
Cdd:COG4913    589 RHEKDD--RRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASA 666

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1617 ERGRelttqRQLMQERAEegkgpskaqrgslehmkliLRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETslll 1696
Cdd:COG4913    667 EREI-----AELEAELER-------------------LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRL---- 718

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1697 sqrEQEIVVLQQQLQEAREQ----GELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQ 1772
Cdd:COG4913    719 ---EKELEQAEEELDELQDRleaaEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2217334293 1773 AHMTLKERHGELQDHKEQARRLEEELA-VEGRRVQALEEVLGDLRAESREQEKALLA 1828
Cdd:COG4913    796 FNREWPAETADLDADLESLPEYLALLDrLEEDGLPEYEERFKELLNENSIEFVADLL 852
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 893-1092 2.72e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 52.07  E-value: 2.72e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  893 QTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKE 972
Cdd:COG4942     22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  973 LEREKASL--TLSLMEKEQRLLVLQEADSIRQ---------QELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADfL 1041
Cdd:COG4942    102 QKEELAELlrALYRLGRQPPLALLLSPEDFLDavrrlqylkYLAPARREQAEELRADLAELAALRAELEAERAELEAL-L 180

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2217334293 1042 AQEAQLLEELEASHITEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAAE 1092
Cdd:COG4942    181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 96-694 4.24e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.25  E-value: 4.24e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293   96 LDELLVRLEEEQQRCESLAEVNTQLRLHMEKADVVNKALREDVEKLTVDWSRARDELMRKESQW-QMEQEffkgylkgeh 174
Cdd:COG1196    234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELaRLEQD---------- 303

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  175 grllslwrevvtfRRHFLEMKSATDRDLMELKAEHVRLSgslltcclrltvgaqsrepngsgrmdgrepAQLLLLLAKTQ 254
Cdd:COG1196    304 -------------IARLEERRRELEERLEELEEELAELE------------------------------EELEELEEELE 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  255 ELEKEAHERSQELIQLKSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEiLETNHTELMEHEASLSRNA 334
Cdd:COG1196    341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-QLEELEEAEEALLERLERL 419

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  335 QEEKLSLQQVIKDITQVMVEEGDNIAQGSGHENSLELDSsifsqfdyQDADKALTLVRSVLTRRRQAVQDLRQQLAGCQE 414
Cdd:COG1196    420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE--------EALLELLAELLEEAALLEAALAELLEELAEAAA 491

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  415 AVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRLRRVN- 493
Cdd:COG1196    492 RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKa 571

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  494 -----VELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTA 568
Cdd:COG1196    572 gratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  569 ALARAEQSIAELSSSENTLKTEVADLRAAAVKLS-ALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVL 647
Cdd:COG1196    652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAeRLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*..
gi 2217334293  648 ARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLES 694
Cdd:COG1196    732 AEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1173-1507 8.49e-06

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 50.67  E-value: 8.49e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1173 QDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRL 1252
Cdd:COG4372     31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1253 RRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQAsaagileEDLRTARSALKLKNEEVESERERAQALQEQG 1332
Cdd:COG4372    111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEEL-------KELEEQLESLQEELAALEQELQALSEAEAEQ 183

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1333 ELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKCRSVL 1412
Cdd:COG4372    184 ALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEEL 263

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1413 EHLPMAVQEREQ-KLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHK 1491
Cdd:COG4372    264 ELAILVEKDTEEeELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLL 343

                          330
                   ....*....|....*.
gi 2217334293 1492 MECQQKLIKELEGQRE 1507
Cdd:COG4372    344 QLLLVGLLDNDVLELL 359
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 798-1662 8.69e-06

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 51.59  E-value: 8.69e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  798 KALESLEREKMELEMRLKEQQTEMEAIQAQRE---EERTQAESALCQMQLETE--KERVSLLETLLQTQKELADASQQLE 872
Cdd:TIGR00606  186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEkacEIRDQITSKEAQLESSREivKSYENELDPLKNRLKEIEHNLSKIM 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  873 RLRQDMKVQKLKEQETTGiLQTQLQEAQRELKEAARQHRDDLAAL-QEESSSLLQDKMDLQKQVEDL--KSQLVAQDDSQ 949
Cdd:TIGR00606  266 KLDNEIKALKSRKKQMEK-DNSELELKMEKVFQGTDEQLNDLYHNhQRTVREKERELVDCQRELEKLnkERRLLNQEKTE 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  950 RLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADS-----IRQQELSALRQDMQEAQGEQKELSA 1024
Cdd:TIGR00606  345 LLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNfhtlvIERQEDEAKTAAQLCADLQSKERLK 424

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1025 QMELLRQEVKEKEADFLAQEAQLLEELEASHITEQQLRA-SLWAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQA 1103
Cdd:TIGR00606  425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELqQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1104 QLASLYSALQQALGSVCESRPELSGGGDSAPSVWGLEPDQNGARSLFKRGPLLTALSAEAVASAL---HKLHQDLWKTQQ 1180
Cdd:TIGR00606  505 SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnkKQLEDWLHSKSK 584

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1181 TRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQnSLESELMELHETMAslQSRLRRAELQRM 1260
Cdd:TIGR00606  585 EINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ-DEESDLERLKEEIE--KSSKQRAMLAGA 661

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1261 EAQGERELLQAAKEN-----LTAQVEHLQAAVVEARAQASAAGILEED-LRTARSALKLKNEEVESERERAQALQEQGEL 1334
Cdd:TIGR00606  662 TAVYSQFITQLTDENqsccpVCQRVFQTEAELQEFISDLQSKLRLAPDkLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1335 KVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAAL------ELLSLDLKKRNQEVDLQQEQIQELEKC 1408
Cdd:TIGR00606  742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLtdvtimERFQMELKDVERKIAQQAAKLQGSDLD 821

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1409 RSVLEhLPMAVQEREQKL---TVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALEL 1485
Cdd:TIGR00606  822 RTVQQ-VNQEKQEKQHELdtvVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1486 EENHHKMECQQKLIKELEGQRETQRVALTHLTLDLEERSQ-ELQAQSSQIHDLESHSTVLARELQERDQEVKSQRE---- 1560
Cdd:TIGR00606  901 IREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQdKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKEteln 980

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1561 ----QIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRqtKILEEDLEQIKLSLRERGRELtTQRQLMQERAEEG 1636
Cdd:TIGR00606  981 tvnaQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL--RKRENELKEVEEELKQHLKEM-GQMQVLQMKQEHQ 1057

                          890       900
                   ....*....|....*....|....*.
gi 2217334293 1637 KGPSKAQRGSLEHMKLILRDKEKEVE 1662
Cdd:TIGR00606 1058 KLEENIDLIKRNHVLALGRQKGYEKE 1083
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 859-1112 9.86e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.53  E-value: 9.86e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  859 QTQKELADASQQLERLRQDMKVQKLKEQEttgiLQTQLQEAQRELKEAARQhrddLAALQEESSSLLQDKMDLQKQVEDL 938
Cdd:COG4942     24 EAEAELEQLQQEIAELEKELAALKKEEKA----LLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAEL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  939 KSQLVAQddsqrlvEQEVQEKLRETQEYNRIQKELEREKASltlSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGE 1018
Cdd:COG4942     96 RAELEAQ-------KEELAELLRALYRLGRQPPLALLLSPE---DFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1019 QKELSAQMELLRQEVKEKEAdflaQEAQLLEELEASHITEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQ 1098
Cdd:COG4942    166 RAELEAERAELEALLAELEE----ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241

                          250
                   ....*....|....
gi 2217334293 1099 AQAQAQLASLYSAL 1112
Cdd:COG4942    242 RTPAAGFAALKGKL 255
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1758-2174 1.04e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 51.11  E-value: 1.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1758 RVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEElavegrrVQALEEVLGDLRAESREQekallalqqqcaeqa 1837
Cdd:COG3096    351 RYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEE-------VDSLKSQLADYQQALDVQ--------------- 408

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1838 qehevETRALQdsWLQAQAVLkERDQELEALRAESqssrhqeeaararaealQEALGKAHAALQGKEQhlleqaelsrSL 1917
Cdd:COG3096    409 -----QTRAIQ--YQQAVQAL-EKARALCGLPDLT-----------------PENAEDYLAAFRAKEQ----------QA 453

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1918 EASTATLQASLDACQAHSRQLEEALRIQE---GEIQdqdlryQEDVQQLQQALAQRDEELRHQQEREQLLEKSLAQRVQE 1994
Cdd:COG3096    454 TEEVLELEQKLSVADAARRQFEKAYELVCkiaGEVE------RSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQR 527

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1995 NMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELrETQQRNNLEALphshktspmeeqslkldslePRLQRE 2074
Cdd:COG3096    528 LRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEEL-EEQAAEAVEQR--------------------SELRQQ 586

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2075 LERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQaSVLERDSEQQRLQDELELTRRALEK--ERLHS 2152
Cdd:COG3096    587 LEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQ-QLLEREREATVERDELAARKQALESqiERLSQ 665

                          410       420
                   ....*....|....*....|....
gi 2217334293 2153 PGATSTAELGSRGEQ--GVQLGEV 2174
Cdd:COG3096    666 PGGAEDPRLLALAERlgGVLLSEI 689
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 1160-1796 1.20e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 50.74  E-value: 1.20e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1160 SAEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTdTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELM 1239
Cdd:TIGR00618  220 RKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLK-KQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAH 298

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1240 ELHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVE 1319
Cdd:TIGR00618  299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT 378

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1320 SERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQ 1399
Cdd:TIGR00618  379 QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1400 EQIQELEKCRSVLEHLPMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLE 1479
Cdd:TIGR00618  459 IHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYA 538

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1480 CLALELEENHHKMECQQKLIKELEGQRETQRVALTHLTldleersQELQAQSSQIHDLESHSTVLARELQERDQEVKSQR 1559
Cdd:TIGR00618  539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT-------QCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1560 EQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGP 1639
Cdd:TIGR00618  612 CEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQ 691

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1640 SKAQRGSLEHMKLILRDKEKEVECQQEHIHELQE----LKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQE--- 1712
Cdd:TIGR00618  692 LTYWKEMLAQCQTLLRELETHIEEYDREFNEIENasssLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEevt 771

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1713 AREQGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKAD-ALQGALEQAHMTLKERHGELQDHKEQA 1791
Cdd:TIGR00618  772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCeTLVQEEEQFLSRLEEKSATLGEITHQL 851


                   ....*
gi 2217334293 1792 RRLEE 1796
Cdd:TIGR00618  852 LKYEE 856
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1163-1875 1.32e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 50.84  E-value: 1.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1163 AVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELH 1242
Cdd:TIGR02169  291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1243 ETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAagiLEEDLRTARSALKLKNEEVESER 1322
Cdd:TIGR02169  371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD---LNAAIAGIEAKINELEEEKEDKA 447

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1323 ERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREM-------QKAALELLSLDLKKRnqeV 1395
Cdd:TIGR02169  448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAseervrgGRAVEEVLKASIQGV---H 524

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1396 DLQQEQIQELEKCRSVLEhlpMAVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQL 1475
Cdd:TIGR02169  525 GTVAQLGSVGERYATAIE---VAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGF 601

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1476 VTLECLALELEENHHKMECQQKLIKE--LEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQErdq 1553
Cdd:TIGR02169  602 AVDLVEFDPKYEPAFKYVFGDTLVVEdiEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQR--- 678

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1554 evksQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEdqrtRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERA 1633
Cdd:TIGR02169  679 ----LRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS----RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1634 EEgkgpskaqrgsLEHMKLILRDKEKEVECQQEHIHELQELKDQLEQQLqglhrkvgetslllsqREQEIVVLQQQLQEA 1713
Cdd:TIGR02169  751 QE-----------IENVKSELKELEARIEELEEDLHKLEEALNDLEARL----------------SHSRIPEIQAELSKL 803

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1714 REQgelkEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKadalqgaleqahmtLKERHGELQDHKEQARR 1793
Cdd:TIGR02169  804 EEE----VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ--------------IKSIEKEIENLNGKKEE 865

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1794 LEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQehEVETRALQDSWLQAQA-VLKERDQELEALRAES 1872
Cdd:TIGR02169  866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA--QIEKKRKRLSELKAKLeALEEELSEIEDPKGED 943


                   ...
gi 2217334293 1873 QSS 1875
Cdd:TIGR02169  944 EEI 946
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 625-836 1.55e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.76  E-value: 1.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  625 QQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQns 704
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE-- 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  705 vIEVTKGQLEVQIQTVTQakeviQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAahekEVNQLREK 784
Cdd:COG4942     99 -LEAQKEELAELLRALYR-----LGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA----ELAALRAE 168

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2217334293  785 WEKERswhqQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAE 836
Cdd:COG4942    169 LEAER----AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA 216
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
267-811 1.57e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 50.42  E-value: 1.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  267 LIQLKSQ-GDLEKAELQDRVTELSALLTQSQKQNEDYEK--------------MIKALRETVEILETNHTELMEHEASLS 331
Cdd:PRK02224   189 LDQLKAQiEEKEEKDLHERLNGLESELAELDEEIERYEEqreqaretrdeadeVLEEHEERREELETLEAEIEDLRETIA 268

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  332 rNAQEEKLSLQQVIKDITQVMVEEGDNIAQGSGHENSLELDSSIFSQfDYQDADKALTLVRSVLTRRRQAVQDLRQQLAG 411
Cdd:PRK02224   269 -ETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEA-RREELEDRDEELRDRLEECRVAAQAHNEEAES 346

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  412 CQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRLRR 491
Cdd:PRK02224   347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRE 426

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  492 VNVELQLQGDSAQGqkeeqqeelhlAVRERERLQEM----LMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVT 567
Cdd:PRK02224   427 REAELEATLRTARE-----------RVEEAEALLEAgkcpECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVE 495

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  568 AALARAEqSIAELSSSENTLKTevadlraaavKLSALNEALALDKVGLNQQllqsRHQQEAATTQLEQLHQEAKRQEEVL 647
Cdd:PRK02224   496 ERLERAE-DLVEAEDRIERLEE----------RREDLEELIAERRETIEEK----RERAEELRERAAELEAEAEEKREAA 560

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  648 ARAVQEKEALVREKAALEVRLQAVERDRQDLAEqlqglssakelLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVI 727
Cdd:PRK02224   561 AEAEEEAEEAREEVAELNSKLAELKERIESLER-----------IRTLLAAIADAEDEIERLREKREALAELNDERRERL 629

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  728 QGE---VRCLKLELDTER-SQAEQERDAAARQLAQAE------QEGKTALEQQKAAHEKEVNQLREKweKERSWHQQELA 797
Cdd:PRK02224   630 AEKrerKRELEAEFDEARiEEAREDKERAEEYLEQVEekldelREERDDLQAEIGAVENELEELEEL--RERREALENRV 707

                          570
                   ....*....|....
gi 2217334293  798 KALESLEREKMELE 811
Cdd:PRK02224   708 EALEALYDEAEELE 721
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 1284-1600 1.76e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 50.12  E-value: 1.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1284 QAAVVEARAQASAAGILEEDLRTARSALKLKNEE----VESERERAQALQEQGELKVAQGK-ALQENLALLTQTLAEREE 1358
Cdd:pfam17380  281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERrrklEEAEKARQAEMDRQAAIYAEQERmAMERERELERIRQEERKR 360

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1359 EVETLRGQ--IQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQREQIREL 1436
Cdd:pfam17380  361 ELERIRQEeiAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRL 440

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1437 EKDRETQrnvLEHQLLELEKKDQMIESQRGQVQDLKKQlvtlecLALELEENHHKMECQQKLIKELEGQRETQRVALTHl 1516
Cdd:pfam17380  441 EEERARE---MERVRLEEQERQQQVERLRQQEEERKRK------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE- 510

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1517 tldlEERSQELQAQssqihDLESHSTVLARELQERDQEVKSQREQ-IEELQRQKEHLTQDLERRDQELMLQKER---IQV 1592
Cdd:pfam17380  511 ----EERKRKLLEK-----EMEERQKAIYEEERRREAEEERRKQQeMEERRRIQEQMRKATEERSRLEAMERERemmRQI 581


                   ....*...
gi 2217334293 1593 LEDQRTRQ 1600
Cdd:pfam17380  582 VESEKARA 589
CCDC22 pfam05667
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ...
 1189-1474 2.28e-05

Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.


Pssm-ID: 461708 [Multi-domain]  Cd Length: 600  Bit Score: 49.64  E-value: 2.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1189 VQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELhetmasLQSRLRRAELQRMEAQGERel 1268
Cdd:pfam05667  228 SQGLASRLTPEEYRKRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAEL------LSSFSGSSTTDTGLTKGSR-- 299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1269 lQAAKENLTAQVEHLQAAVVEARAQASaagilEEDLRTARSalklknEEVESERERAQALQEQGElkvaqgkALQENLAL 1348
Cdd:pfam05667  300 -FTHTEKLQFTNEAPAATSSPPTKVET-----EEELQQQRE------EELEELQEQLEDLESSIQ-------ELEKEIKK 360

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1349 LTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLD---LKKRNQEVDLQQEQIQEL----EKCRS--VLEHLPMAV 1419
Cdd:pfam05667  361 LESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLPDAeenIAKLQALVDASAQRLVELagqwEKHRVplIEEYRALKE 440

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1420 QEREQKLTVQReQIRELEKDRETQRNVLEhqllELEKKDQMIESQRGQVQDLKKQ 1474
Cdd:pfam05667  441 AKSNKEDESQR-KLEEIKELREKIKEVAE----EAKQKEELYKQLVAEYERLPKD 490
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
398-889 2.42e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 49.65  E-value: 2.42e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  398 RRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRq 477
Cdd:PRK02224   249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELR- 327

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  478 qlEVLEQEAWRLRRVNVELQLQGDSAQGQKEeqqeelhlavrERERLQEMLMGLEAKQSESLSELITLREALESSHLEGE 557
Cdd:PRK02224   328 --DRLEECRVAAQAHNEEAESLREDADDLEE-----------RAEELREEAAELESELEEAREAVEDRREEIEELEEEIE 394

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  558 LLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKL-SALNEALALDKVG----LNQQLLQSRH-----QQE 627
Cdd:PRK02224   395 ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTArERVEEAEALLEAGkcpeCGQPVEGSPHvetieEDR 474

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  628 AATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIE 707
Cdd:PRK02224   475 ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  708 VTkgqlEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEK 787
Cdd:PRK02224   555 EK----REAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLA 630

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  788 ERSWHQQELA-----KALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQ-LETEKERVSLLETLLQTQ 861
Cdd:PRK02224   631 EKRERKRELEaefdeARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEeLEELRERREALENRVEAL 710

                          490       500       510
                   ....*....|....*....|....*....|..
gi 2217334293  862 KELADASQQLE----RLRQDMKVQKLKEQETT 889
Cdd:PRK02224   711 EALYDEAEELEsmygDLRAELRQRNVETLERM 742
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 1205-2046 3.33e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 49.58  E-value: 3.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1205 QVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQ 1284
Cdd:pfam02463  189 IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA 268

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1285 AAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLR 1364
Cdd:pfam02463  269 QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELE 348

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1365 GQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKCRSVLEhlpmavQEREQKLTVQREQIRELEKDRETQR 1444
Cdd:pfam02463  349 IKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL------ELKSEEEKEAQLLLELARQLEDLLK 422

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1445 NVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQKLIKELEGQRetQRVALTHLTLDLEERS 1524
Cdd:pfam02463  423 EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE--QLELLLSRQKLEERSQ 500

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1525 QELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLE---RRDQELMLQKERIQVLEDQRTRQT 1601
Cdd:pfam02463  501 KESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVsatADEVEERQKLVRALTELPLGARKL 580

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1602 KILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKE-----------VECQQEHIHE 1670
Cdd:pfam02463  581 RLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKEsakakesglrkGVSLEEGLAE 660

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1671 LQELKDQLEQQLQGLHRKVgETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQ 1750
Cdd:pfam02463  661 KSEVKASLSELTKELLEIQ-ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELK 739

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1751 QAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQ 1830
Cdd:pfam02463  740 LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1831 QQCAEQAQEHEVETRALQdswLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHLLEQ 1910
Cdd:pfam02463  820 EQLLIEQEEKIKEEELEE---LALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEK 896

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1911 AELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQEREQLLEKSLAQ 1990
Cdd:pfam02463  897 EEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVN 976

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2217334293 1991 RVQENMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLE 2046
Cdd:pfam02463  977 LMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKG 1032
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1230-1464 4.75e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.22  E-value: 4.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1230 KQNSLESELMELHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAagiLEEDLRTARS 1309
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE---LEKEIAELRA 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1310 ALKLKNEEVESERERAQALQEQGELKV----AQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLS 1385
Cdd:COG4942     98 ELEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1386 LDLKKrnqevdlQQEQIQELEKCRSVLEHLpmaVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQ 1464
Cdd:COG4942    178 ALLAE-------LEEERAALEALKAERQKL---LARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1237-1450 5.75e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 48.76  E-value: 5.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1237 ELMELHETMASLQSRLRRaeLQRMEAQGERelLQAAKENLTAQVEHLQAAVVEARAQASAAgiLEEDLRTARSAL-KLKN 1315
Cdd:COG4913    236 DLERAHEALEDAREQIEL--LEPIRELAER--YAAARERLAELEYLRAALRLWFAQRRLEL--LEAELEELRAELaRLEA 309

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1316 EEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEV 1395
Cdd:COG4913    310 ELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1396 DLQQEQIQELEKcrsvlehlpmAVQEREQKLTVQREQIRELEKDRETQRNVLEHQ 1450
Cdd:COG4913    390 AALLEALEEELE----------ALEEALAEAEAALRDLRRELRELEAEIASLERR 434
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
655-1293 6.05e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 48.76  E-value: 6.05e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  655 EALVREKAALEVrLQAVERDRQDLAEQLQGLSSAKELLE-SSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEviqgevrc 733
Cdd:COG4913    242 EALEDAREQIEL-LEPIRELAERYAAARERLAELEYLRAaLRLWFAQRRLELLEAELEELRAELARLEAELE-------- 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  734 lklELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWekerswhqQELAKALESLEREKMELEMR 813
Cdd:COG4913    313 ---RLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRR--------ARLEALLAALGLPLPASAEE 381

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  814 LKEQQTEMEAIQAQREEERTQAEsalcqmqleteKERVSLLETLLQTQKELADASQQLERLRQ-----DMKVQKLKEQ-- 886
Cdd:COG4913    382 FAALRAEAAALLEALEEELEALE-----------EALAEAEAALRDLRRELRELEAEIASLERrksniPARLLALRDAla 450

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  887 ETTGILQT---------QLQEAQRELKEAA---------------RQHRDDLAALQEESsslLQDKMDLQKQVEDLKSQL 942
Cdd:COG4913    451 EALGLDEAelpfvgeliEVRPEEERWRGAIervlggfaltllvppEHYAAALRWVNRLH---LRGRLVYERVRTGLPDPE 527

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  943 VAQDDSQRLVE----------QEVQEKLRETQEYNRI--QKELEREKASLTLSLM--------EKEQRLLVLQE----AD 998
Cdd:COG4913    528 RPRLDPDSLAGkldfkphpfrAWLEAELGRRFDYVCVdsPEELRRHPRAITRAGQvkgngtrhEKDDRRRIRSRyvlgFD 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  999 SIRQqeLSALRQDMQEAQGEQKELSAQMELLRQEVKEkeadfLAQEAQLLEELEASHITEQQLRASLWAQEAKAAQLQlR 1078
Cdd:COG4913    608 NRAK--LAALEAELAELEEELAEAEERLEALEAELDA-----LQERREALQRLAEYSWDEIDVASAEREIAELEAELE-R 679

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1079 LRSTESQLEALAAEQQPGNQAqaqaqlaslYSALQQALGSVCESRpelsgggdsapsvWGLEPDQNGARSLFKRGPLLTA 1158
Cdd:COG4913    680 LDASSDDLAALEEQLEELEAE---------LEELEEELDELKGEI-------------GRLEKELEQAEEELDELQDRLE 737

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1159 LSAEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLsqnqeeKSKWEGKQNSLESEL 1238
Cdd:COG4913    738 AAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAF------NREWPAETADLDADL 811

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1239 MELHETMASLQsRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQ 1293
Cdd:COG4913    812 ESLPEYLALLD-RLEEDGLPEYEERFKELLNENSIEFVADLLSKLRRAIREIKER 865
mukB PRK04863
chromosome partition protein MukB;
250-1010 6.93e-05

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 48.41  E-value: 6.93e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  250 LAKTQELEKEAHERSQELIQLKSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMIKALRE----------TVEILETN 319
Cdd:PRK04863   364 LEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERakqlcglpdlTADNAEDW 443

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  320 HTELM--EHEASLSRNAQEEKLSLQQVIKDItqvmveegdniaqgsgHENSLELDSSIFSQFDYQDA-DKALTLVRSVLT 396
Cdd:PRK04863   444 LEEFQakEQEATEELLSLEQKLSVAQAAHSQ----------------FEQAYQLVRKIAGEVSRSEAwDVARELLRRLRE 507

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  397 RRRQA--VQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQkltgERDTLAGQTVDLQGEVDSLSKERELLQKAREE 474
Cdd:PRK04863   508 QRHLAeqLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLD----DEDELEQLQEELEARLESLSESVSEARERRMA 583

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  475 LRQQLEVLEQEAWRLRRVNVE-LQLQ----------GDSAQGQKEEQQEELHLAVRERE-------------RLQEMLMG 530
Cdd:PRK04863   584 LRQQLEQLQARIQRLAARAPAwLAAQdalarlreqsGEEFEDSQDVTEYMQQLLEREREltverdelaarkqALDEEIER 663

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  531 LEAKQSESLSELITLREalessHLEGELLR--------QEQTEVTAALARAEQSIAelsssentlkteVADLRAAAVKLS 602
Cdd:PRK04863   664 LSQPGGSEDPRLNALAE-----RFGGVLLSeiyddvslEDAPYFSALYGPARHAIV------------VPDLSDAAEQLA 726

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  603 ALNEAL-----------ALDKVGLNQQLLQSRHQQEAATTQL-------EQLHQEAKRqEEVLARAVQEKEALVREKAAL 664
Cdd:PRK04863   727 GLEDCPedlyliegdpdSFDDSVFSVEELEKAVVVKIADRQWrysrfpeVPLFGRAAR-EKRIEQLRAEREELAERYATL 805

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  665 EVRLQAVERDRQDLaEQLQGLSSAKELL---ESSLFEAQQQNSVIEVTKGQLEVQIQTVT----QAKEVIQGEVRCLKLE 737
Cdd:PRK04863   806 SFDVQKLQRLHQAF-SRFIGSHLAVAFEadpEAELRQLNRRRVELERALADHESQEQQQRsqleQAKEGLSALNRLLPRL 884

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  738 LDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAH--EKEVNQLREKWEK-ERSWHQQELAKALESLEREKMELEMRL 814
Cdd:PRK04863   885 NLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAqlEPIVSVLQSDPEQfEQLKQDYQQAQQTQRDAKQQAFALTEV 964

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  815 KEQQTEMEAIQAQRE-EERTQAESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQ--DMKVQKLKEqettgi 891
Cdd:PRK04863   965 VQRRAHFSYEDAAEMlAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSsyDAKRQMLQE------ 1038

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  892 LQTQLQE----AQRELKEAARQHRDDLaalQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRE-TQEY 966
Cdd:PRK04863  1039 LKQELQDlgvpADSGAEERARARRDEL---HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQvVNAK 1115

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*
gi 2217334293  967 NRIQKELEREKASLTLS-LMEKEQRLLVLQEADSIRQQELSALRQ 1010
Cdd:PRK04863  1116 AGWCAVLRLVKDNGVERrLHRRELAYLSADELRSMSDKALGALRL 1160
TPH pfam13868
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ...
 768-1063 6.95e-05

Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.


Pssm-ID: 464007 [Multi-domain]  Cd Length: 341  Bit Score: 47.61  E-value: 6.95e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  768 EQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAI----QAQREEERTQAESALCQMQ 843
Cdd:pfam13868   32 KRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEERKRYRQELEEQIEEREQKrqeeYEEKLQEREQMDEIVERIQ 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  844 LETEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSS 923
Cdd:pfam13868  112 EEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEEEKEREIARLRA 191

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  924 LLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLtlSLMEKEQRLLVLQEADSIRQQ 1003
Cdd:pfam13868  192 QQEKAQDEKAERDELRAKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELK--ERRLAEEAEREEEEFERMLRK 269

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1004 ELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLLEELEASHITEQQLRA 1063
Cdd:pfam13868  270 QAEDEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREEELEEGERLREEEAERRE 329
PTZ00121 PTZ00121
MAEBL; Provisional
 1909-2339 7.05e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.60  E-value: 7.05e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1909 EQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALaqRDEELRHQQEREQLlekSL 1988
Cdd:PTZ00121  1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDAR--KAEEARKAEDAKRV---EI 1156

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1989 AQRVQE-NMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTSPMEE----QSLK 2063
Cdd:PTZ00121  1157 ARKAEDaRKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAvkkaEEAK 1236

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2064 LDSLEPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQASVLERDSEQQRLQDELELTRR 2143
Cdd:PTZ00121  1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2144 ALEKERLHSPGATSTAELGSRGEQGVQLGEVSGVEAEPSPDGMEKQSWRQRLEHLQQAVARLEIDRSRLQRHNVQLRSTL 2223
Cdd:PTZ00121  1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2224 EQVERERRKLKREAMRAAQA-GSLEISKATASSPTQQDGRGQKNSDAKCVAELQKEV----VLLQAQLTLERKQKQDYIT 2298
Cdd:PTZ00121  1397 KKKAEEDKKKADELKKAAAAkKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAeeakKAEEAKKKAEEAKKADEAK 1476

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|.
gi 2217334293 2299 RSAQTSRElagLHHSLSHSLLAVAQAPEATVLEAETRRLDE 2339
Cdd:PTZ00121  1477 KKAEEAKK---ADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 229-485 8.62e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.14  E-value: 8.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  229 SREPNGSGRMDGREPAQLLLLLAKTQELEKEAHERSQELiqlksqgdlekAELQDRVTELSALLTQSQKQNEDYEKMIKA 308
Cdd:TIGR02169  659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSEL-----------RRIENRLDELSQELSDASRKIGEIEKEIEQ 727

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  309 LRETVEILETNHTELMEHEASLSRNAQEEKLSLQQVIKDITQVMVEegdnIAQGSGHENSLE--LDSSIFSQFD--YQDA 384
Cdd:TIGR02169  728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED----LHKLEEALNDLEarLSHSRIPEIQaeLSKL 803

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  385 DKALTLVRSVLTRRRQAVQDLRQQLAGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKE 464
Cdd:TIGR02169  804 EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883

                          250       260
                   ....*....|....*....|.
gi 2217334293  465 RELLQKAREELRQQLEVLEQE 485
Cdd:TIGR02169  884 LGDLKKERDELEAQLRELERK 904
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 1179-1871 1.14e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 47.73  E-value: 1.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1179 QQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQ 1258
Cdd:TIGR00606  348 EQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQ 427

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1259 ----RMEAQGERELLQAAKENLTAQVEHLQAAVVEAR-AQASAAGILE--EDLRTARSALKL--KNEEVESERERAQALQ 1329
Cdd:TIGR00606  428 adeiRDEKKGLGRTIELKKEILEKKQEELKFVIKELQqLEGSSDRILEldQELRKAERELSKaeKNSLTETLKKEVKSLQ 507

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1330 -EQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSL--DLKKRNQEVDLQQEQIQELE 1406
Cdd:TIGR00606  508 nEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgYFPNKKQLEDWLHSKSKEIN 587

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1407 KCRSVLEHLPMAVQEREQkltvQREQIRELEKDRETQRNVLEHQLLEL---EKKDQMIESQRGQVQDLKKQLV-----TL 1478
Cdd:TIGR00606  588 QTRDRLAKLNKELASLEQ----NKNHINNELESKEEQLSSYEDKLFDVcgsQDEESDLERLKEEIEKSSKQRAmlagaTA 663

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1479 ECLALELEENHHKMECQQKLIKELEGQRETQRVA------LTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERD 1552
Cdd:TIGR00606  664 VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFIsdlqskLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1553 QEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQTKIleedlEQIKLSLRERGRELTTQRQLMQer 1632
Cdd:TIGR00606  744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIM-----ERFQMELKDVERKIAQQAAKLQ-- 816

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1633 aeegkgpSKAQRGSLEHMKLILRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGEtsllLSQREQEIVVLQQQLQE 1712
Cdd:TIGR00606  817 -------GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE----LKSEKLQIGTNLQRRQQ 885

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1713 AREQGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQAR 1792
Cdd:TIGR00606  886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965

                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1793 RLEEELAVEgrRVQALEEVLGDLRAESREQEKallalqQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAE 1871
Cdd:TIGR00606  966 DGKDDYLKQ--KETELNTVNAQLEECEKHQEK------INEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEE 1036
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
754-1373 1.21e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.60  E-value: 1.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  754 RQLAQAEQEGKTALEQQKAahekeVNQLREKWEKerswhQQELAKALESLEREKMELemRLKEQQTEMEAIQAQREEERT 833
Cdd:COG4913    235 DDLERAHEALEDAREQIEL-----LEPIRELAER-----YAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRA 302

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  834 QAESALCQMQlETEKERVSLLETLLQTQKELADAS-QQLERLRQDMKVQKLKEQETTGILQtQLQEAQRELKEAARQHRD 912
Cdd:COG4913    303 ELARLEAELE-RLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRA-RLEALLAALGLPLPASAE 380

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  913 DLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQddsqrlvEQEVQEKLREtqeynriqkeLEREKASLtlslmeKEQRLL 992
Cdd:COG4913    381 EFAALRAEAAALLEALEEELEALEEALAEAEAA-------LRDLRRELRE----------LEAEIASL------ERRKSN 437

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  993 VLQEADSIRQQELSALRQDmqeaqgeQKELSAQMELLrqEVKEKEADFL------------------AQEAQLLEELEAS 1054
Cdd:COG4913    438 IPARLLALRDALAEALGLD-------EAELPFVGELI--EVRPEEERWRgaiervlggfaltllvppEHYAAALRWVNRL 508

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1055 HiteqqLRASLWAQEAKAAQLQLRLRSTESQleALAAEqqpgnqaqAQAQLASLYSALQQALGSV-----CESRPELSGG 1129
Cdd:COG4913    509 H-----LRGRLVYERVRTGLPDPERPRLDPD--SLAGK--------LDFKPHPFRAWLEAELGRRfdyvcVDSPEELRRH 573

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1130 GdsapsvwglepdqngarslfkrgpllTALSAEAVASALHKLHQ-DLWKTQQTRDVL----RDQVQKLEERLTDTEAEKS 1204
Cdd:COG4913    574 P--------------------------RAITRAGQVKGNGTRHEkDDRRRIRSRYVLgfdnRAKLAALEAELAELEEELA 627

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1205 QVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMelhetMASLQSRLRRAELQRMEAQGERELLQAAKEnltaQVEHLQ 1284
Cdd:COG4913    628 EAEERLEALEAELDALQERREALQRLAEYSWDEID-----VASAEREIAELEAELERLDASSDDLAALEE----QLEELE 698

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1285 AAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLAER-EEEVETL 1363
Cdd:COG4913    699 AELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENlEERIDAL 778

                          650
                   ....*....|
gi 2217334293 1364 RGQIQELEKQ 1373
Cdd:COG4913    779 RARLNRAEEE 788
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 532-1047 1.22e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 47.32  E-value: 1.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  532 EAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSA----LNEA 607
Cdd:TIGR04523   32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSdlskINSE 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  608 LALDK----------VGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQD 677
Cdd:TIGR04523  112 IKNDKeqknklevelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDK 191

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  678 LAEQLqglsSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLEL---DTERSQAEQERDAAAR 754
Cdd:TIGR04523  192 IKNKL----LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIsntQTQLNQLKDEQNKIKK 267

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  755 QLAQAEQEGKTAlEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESlerekmelemRLKEQQTEMEAIQAQREEErTQ 834
Cdd:TIGR04523  268 QLSEKQKELEQN-NKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKS----------ELKNQEKKLEEIQNQISQN-NK 335

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  835 AESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLR--QDMKVQKLKEQET-TGILQTQLQEAQRELKEaarqhr 911
Cdd:TIGR04523  336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKkeNQSYKQEIKNLESqINDLESKIQNQEKLNQQ------ 409

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  912 ddlaaLQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRL 991
Cdd:TIGR04523  410 -----KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2217334293  992 LVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQL 1047
Cdd:TIGR04523  485 EQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
780-956 1.29e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 47.45  E-value: 1.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  780 QLREKWEKERSWhqQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERvslLETLLQ 859
Cdd:COG4717     79 ELKEAEEKEEEY--AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPER---LEELEE 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  860 TQKELADASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLK 939
Cdd:COG4717    154 RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLE 233

                          170
                   ....*....|....*..
gi 2217334293  940 SQLVAQDDSQRLVEQEV 956
Cdd:COG4717    234 NELEAAALEERLKEARL 250
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
520-1037 1.40e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 47.37  E-value: 1.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  520 ERERLQEMLMGLEakqsESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVAD---LRA 596
Cdd:PRK03918   215 ELPELREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKElkeLKE 290

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  597 AAVKLSALNEALALDKVGLNQ-QLLQSRHQQEAAttQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDR 675
Cdd:PRK03918   291 KAEEYIKLSEFYEEYLDELREiEKRLSRLEEEIN--GIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK 368

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  676 QdLAEQLQGLSSAKELLesslfeaqqqnsvievTKGQLEVQIQTVTQAKEVIQGEVRCLKLELdTERSQAEQERDAAARQ 755
Cdd:PRK03918   369 A-KKEELERLKKRLTGL----------------TPEKLEKELEELEKAKEEIEEEISKITARI-GELKKEIKELKKAIEE 430

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  756 LAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTemeaIQAQRE--EERT 833
Cdd:PRK03918   431 LKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE----LIKLKElaEQLK 506

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  834 QAESALCQMQLETEKERVSLLETLlqtQKELADASQQLERLRQDMKVQKLKEQETTgILQTQLQEAQRELKEAARQHRDD 913
Cdd:PRK03918   507 ELEEKLKKYNLEELEKKAEEYEKL---KEKLIKLKGEIKSLKKELEKLEELKKKLA-ELEKKLDELEEELAELLKELEEL 582

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  914 LAALQEESSSLLQDKMDLQKQ---VEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQR 990
Cdd:PRK03918   583 GFESVEELEERLKELEPFYNEyleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE 662

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*..
gi 2217334293  991 llVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKE 1037
Cdd:PRK03918   663 --ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1701-1878 1.54e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.22  E-value: 1.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1701 QEIVVLQQQLQEAREQ-GELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKE 1779
Cdd:COG4913    255 EPIRELAERYAAARERlAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG 334

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1780 RHGE-LQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQEHEVETRALQDSWLQAQAVL 1858
Cdd:COG4913    335 NGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL 414

                          170       180
                   ....*....|....*....|
gi 2217334293 1859 KERDQELEALRAESQSSRHQ 1878
Cdd:COG4913    415 RDLRRELRELEAEIASLERR 434
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1173-1718 1.60e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.22  E-value: 1.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1173 QDLWKTQQTRdvLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQeekskwegkqnsleselmelHETMASLQSRL 1252
Cdd:COG4913    290 LELLEAELEE--LRAELARLEAELERLEARLDALREELDELEAQIRGNG--------------------GDRLEQLEREI 347

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1253 RRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASA-AGILEEDLRTARSAL-KLKNEEVESERERAQALQE 1330
Cdd:COG4913    348 ERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAlLEALEEELEALEEALaEAEAALRDLRRELRELEAE 427

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1331 QGELKVAQG---KALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKA--------ALELL--------------S 1385
Cdd:COG4913    428 IASLERRKSnipARLLALRDALAEALGLDEAELPFVGELIEVRPEEERWRGAiervlggfALTLLvppehyaaalrwvnR 507

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1386 LDLKKRNQ----EVDLQQEQIQELEKcRSVLEHL---PMAVQEREQKLTVQR------EQIRELEK-DRETQRNVLEHQL 1451
Cdd:COG4913    508 LHLRGRLVyervRTGLPDPERPRLDP-DSLAGKLdfkPHPFRAWLEAELGRRfdyvcvDSPEELRRhPRAITRAGQVKGN 586

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1452 LELEKKDQMIESQRGQV--QDLKKQLVTLECLALELEENHHKMECQQKLIKELEGQRETQRVALTHLT------LDLEER 1523
Cdd:COG4913    587 GTRHEKDDRRRIRSRYVlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAeyswdeIDVASA 666

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1524 SQELQAQSSQIHDLESHSTVLA---RELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDqrtRQ 1600
Cdd:COG4913    667 EREIAELEAELERLDASSDDLAaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED---LA 743

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1601 TKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRD---KEKEVECQQEHIHELQELKDQ 1677
Cdd:COG4913    744 RLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREwpaETADLDADLESLPEYLALLDR 823

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|..
gi 2217334293 1678 LEQqlQGLHRKVGE-TSLLLSQREQEIVVLQQQLQEAREQGE 1718
Cdd:COG4913    824 LEE--DGLPEYEERfKELLNENSIEFVADLLSKLRRAIREIK 863
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 1212-1704 1.76e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 47.14  E-value: 1.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1212 DLQRQLSQNQEEKSKWEGKQNSLESELMELhetmASLQSRLRRAELQRMEAQGERELLQAAKENLTAQvehLQAAVVEAR 1291
Cdd:pfam12128  231 QAIAGIMKIRPEFTKLQQEFNTLESAELRL----SHLHFGYKSDETLIASRQEERQETSAELNQLLRT---LDDQWKEKR 303

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1292 AQASAagileeDLRTARSALKLKNEEVESERERAQALQEQGelkVAQGKALQENLALLTQTLAEREEEVETLRGQIQELE 1371
Cdd:pfam12128  304 DELNG------ELSAADAAVAKDRSELEALEDQHGAFLDAD---IETAAADQEQLPSWQSELENLEERLKALTGKHQDVT 374

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1372 KQREMQKAALEL-LSLDLKKRNQEVDLQQEQI-QELEKCRSVLEHLPMAVQER-EQKLTVQREQIRELE------KDRET 1442
Cdd:pfam12128  375 AKYNRRRSKIKEqNNRDIAGIKDKLAKIREARdRQLAVAEDDLQALESELREQlEAGKLEFNEEEYRLKsrlgelKLRLN 454

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1443 QRNVLEHQLLELEKKDQMIESQRGQVQDLKKqlvtleclaleleenhhKMECQQKLIKELEGQRETQRVALTHLTLDLEE 1522
Cdd:pfam12128  455 QATATPELLLQLENFDERIERAREEQEAANA-----------------EVERLQSELRQARKRRDQASEALRQASRRLEE 517

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1523 RSQELQAQSSQ--------IHDL--------ESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRD------ 1580
Cdd:pfam12128  518 RQSALDELELQlfpqagtlLHFLrkeapdweQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDvpewaa 597

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1581 QELMLQKERIQVLEDQRTRQTKI--LEEDLEQIKLSLRERGRELTTQRQ-LMQERAEEGKGPSKAQRGSLEHMKLILRDK 1657
Cdd:pfam12128  598 SEEELRERLDKAEEALQSAREKQaaAEEQLVQANGELEKASREETFARTaLKNARLDLRRLFDEKQSEKDKKNKALAERK 677

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*..
gi 2217334293 1658 EKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIV 1704
Cdd:pfam12128  678 DSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVE 724
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
472-911 1.91e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 46.68  E-value: 1.91e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  472 REELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALES 551
Cdd:COG4717     48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  552 SHLEGEL--LRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALnealaldkvgLNQQLLQSRHQQEAA 629
Cdd:COG4717    128 LPLYQELeaLEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEEL----------LEQLSLATEEELQDL 197

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  630 TTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAvERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVT 709
Cdd:COG4717    198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA-AALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  710 KGQLEVQ-------IQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLR 782
Cdd:COG4717    277 GVLFLVLgllallfLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  783 EKWEKERSWHQQELAKA-------LESLE--REKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSL 853
Cdd:COG4717    357 EELEEELQLEELEQEIAallaeagVEDEEelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE 436

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293  854 LETLLQ-TQKELADASQQLERLRQDMKvqKLKEQETTGILQTQLQEAQRELKEAARQHR 911
Cdd:COG4717    437 LEEELEeLEEELEELREELAELEAELE--QLEEDGELAELLQELEELKAELRELAEEWA 493
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 428-663 2.25e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.91  E-value: 2.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  428 EEGKALRQRLQKLTGERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQK 507
Cdd:COG4942     20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  508 EEQqeelhlavreRERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTL 587
Cdd:COG4942    100 EAQ----------KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217334293  588 KTEVADLRAAAVKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAA 663
Cdd:COG4942    170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1972-2149 2.76e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 46.45  E-value: 2.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1972 EELRHQQEREQLLEKSLAQRVQENMIQEKQNLGQERE--EEEIRGLHQSVRELQLTLAQKEQEILELRETQQRNNLEALP 2049
Cdd:COG4913    262 ERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEelRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLE 341

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2050 hshktspmeeqslkldslepRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQASVLERDS 2129
Cdd:COG4913    342 --------------------QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE 401

                          170       180
                   ....*....|....*....|
gi 2217334293 2130 EQQRLQDELELTRRALEKER 2149
Cdd:COG4913    402 ALEEALAEAEAALRDLRREL 421
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
664-919 2.89e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 46.16  E-value: 2.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  664 LEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIevtkgQLEVQIQTVTQAKEviqgevrclklELDTERS 743
Cdd:COG3206    166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV-----DLSEEAKLLLQQLS-----------ELESQLA 229

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  744 QAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQlrekwekerswhqqELAKALESLEREKMELEMRLKEQQTEMEA 823
Cdd:COG3206    230 EARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQ--------------QLRAQLAELEAELAELSARYTPNHPDVIA 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  824 IQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQKELADASQQLERLRQdmkvqklkeqettgiLQTQLQEAQREL 903
Cdd:COG3206    296 LRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPE---------------LEAELRRLEREV 360

                          250
                   ....*....|....*.
gi 2217334293  904 KEAARQHRDDLAALQE 919
Cdd:COG3206    361 EVARELYESLLQRLEE 376
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1253-1635 3.08e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 46.48  E-value: 3.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1253 RRAELQRMEAQGERELlQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDLRTARSALKLKNEevesererAQALQEqg 1332
Cdd:COG3096    279 ERRELSERALELRREL-FGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQT--------ALRQQE-- 347

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1333 elKVAQgkaLQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQ-------EQIQEL 1405
Cdd:COG3096    348 --KIER---YQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQtraiqyqQAVQAL 422

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1406 EKCRSVLEHLPMA---VQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIES-----QRGQVQDLKKQLVT 1477
Cdd:COG3096    423 EKARALCGLPDLTpenAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiagevERSQAWQTARELLR 502

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1478 LECLALELEENHHKMECQQK-LIKELEGQRETQRValthltldLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVK 1556
Cdd:COG3096    503 RYRSQQALAQRLQQLRAQLAeLEQRLRQQQNAERL--------LEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAA 574

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1557 SQREQIEELQRQKEHLTQD---LERRDQELMLQKERIQVLEDQRTRQTKILEEDLEQIKLSLrERGRELTTQRQLMQERA 1633
Cdd:COG3096    575 EAVEQRSELRQQLEQLRARikeLAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLL-EREREATVERDELAARK 653


                   ..
gi 2217334293 1634 EE 1635
Cdd:COG3096    654 QA 655
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1545-1773 3.97e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 46.06  E-value: 3.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1545 ARELQERDQEVKSQREQIEELQRQKEHLTQdLERRDQELMLQKERIQVLEDQRTRQTkiLEEDLEQIKLsLRERGRELTT 1624
Cdd:COG4913    227 ADALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAARERLAELEYLRAALR--LWFAQRRLEL-LEAELEELRA 302

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1625 QRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKE-KEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEI 1703
Cdd:COG4913    303 ELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEF 382

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1704 VVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQA 1773
Cdd:COG4913    383 AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 502-754 5.48e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 5.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  502 SAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELS 581
Cdd:COG4942     17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  582 SSENTLKTEVADLRAAAVKLSALNEALALdkvgLNQQllqsrhqqeaattQLEQLHQEAKRQEEVLARAVQEKEALVREK 661
Cdd:COG4942     97 AELEAQKEELAELLRALYRLGRQPPLALL----LSPE-------------DFLDAVRRLQYLKYLAPARREQAEELRADL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  662 AALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTE 741
Cdd:COG4942    160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239

                          250
                   ....*....|...
gi 2217334293  742 RSQAEQERDAAAR 754
Cdd:COG4942    240 AERTPAAGFAALK 252
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 465-849 5.50e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 45.33  E-value: 5.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  465 RELLQKAREELRQQLEVLEQEAWRLRRVNVEL-QLQGDSAQGQKEEQQEELHLA-VRERERLQEMLmgleAKQSESLSEL 542
Cdd:COG3096    284 SERALELRRELFGARRQLAEEQYRLVEMARELeELSARESDLEQDYQAASDHLNlVQTALRQQEKI----ERYQEDLEEL 359

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  543 itlREALESSHLEGELLRQEQTEVTAALARAEQSIAELsssentlKTEVADL---------RAAAVK--LSALNEALA-- 609
Cdd:COG3096    360 ---TERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSL-------KSQLADYqqaldvqqtRAIQYQqaVQALEKARAlc 429

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  610 ----LDKVGLNQQLLQSRHQQEAATTQLEQLHQ------EAKRQEEVLARAVQEKEALVREKAALEVRLQAVE--RDRQD 677
Cdd:COG3096    430 glpdLTPENAEDYLAAFRAKEQQATEEVLELEQklsvadAARRQFEKAYELVCKIAGEVERSQAWQTARELLRryRSQQA 509

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  678 LAEQLQGLssakellESSLFEAQQQnsvievtkgqLEVQIQTVTQAKEVIQGEVRCLK--LELDTERSQAEQERDAAARQ 755
Cdd:COG3096    510 LAQRLQQL-------RAQLAELEQR----------LRQQQNAERLLEEFCQRIGQQLDaaEELEELLAELEAQLEELEEQ 572

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  756 LAQAeQEGKTALEQQKAAHEKEVNQLRekwEKERSWHqqelaKALESLEREKMELEMRLKEQQTEMEAIQ--AQREEERT 833
Cdd:COG3096    573 AAEA-VEQRSELRQQLEQLRARIKELA---ARAPAWL-----AAQDALERLREQSGEALADSQEVTAAMQqlLEREREAT 643

                          410
                   ....*....|....*.
gi 2217334293  834 QAESALCQMQLETEKE 849
Cdd:COG3096    644 VERDELAARKQALESQ 659
PRK11281 PRK11281
mechanosensitive channel MscK;
815-1083 5.74e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 45.29  E-value: 5.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  815 KEQQTEMEAIQAQREEErtqAESALCQMQLET-----------EKERVSLLETLLQTQKELADASQQLERLRQDMKVQKL 883
Cdd:PRK11281    39 ADVQAQLDALNKQKLLE---AEDKLVQQDLEQtlalldkidrqKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETR 115

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  884 KEQETTgilqtqlqeaqrelkeaarqhrdDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRET 963
Cdd:PRK11281   116 ETLSTL-----------------------SLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRL 172

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  964 QEYNRIQKELEREKASLTLS---LMEKEQRLLVLQeaDSIRQQELSA--LRQDMQEAQ-----GEQKELSAQMELLRQEV 1033
Cdd:PRK11281   173 QQIRNLLKGGKVGGKALRPSqrvLLQAEQALLNAQ--NDLQRKSLEGntQLQDLLQKQrdyltARIQRLEHQLQLLQEAI 250

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2217334293 1034 KEKEadfLAQEAQLLEELEASHITEQQLRASLWAQEAkAAQLQLR---LRSTE 1083
Cdd:PRK11281   251 NSKR---LTLSEKTVQEAQSQDEAARIQANPLVAQEL-EINLQLSqrlLKATE 299
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 964-1066 5.98e-04

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 45.33  E-value: 5.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  964 QEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADsirqQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQ 1043
Cdd:PRK11448   142 NLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQ----QELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQK 217

                           90       100       110
                   ....*....|....*....|....*....|..
gi 2217334293 1044 EAQL---------LEELEASHITEQQLRASLW 1066
Cdd:PRK11448   218 RKEItdqaakrleLSEEETRILIDQQLRKAGW 249
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 596-823 6.03e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 6.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  596 AAAVKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDR 675
Cdd:COG4942     13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  676 QDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQ-------IQTVTQAKEVIQGEVRCLKLELDTERSQAEQE 748
Cdd:COG4942     93 AELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAE 172

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293  749 RDAAARQLAQAEQEgKTALEQQKAAHEKEVNQLREKwekerswhQQELAKALESLEREKMELEMRLKEQQTEMEA 823
Cdd:COG4942    173 RAELEALLAELEEE-RAALEALKAERQKLLARLEKE--------LAELAAELAELQQEAEELEALIARLEAEAAA 238
46 PHA02562
endonuclease subunit; Provisional
 767-993 6.50e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 45.01  E-value: 6.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  767 LEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELEmRLKEQQTEMEAIQaqreEERTQAESALCQ--MQL 844
Cdd:PHA02562   193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIE-ELTDELLNLVMDI----EDPSAALNKLNTaaAKI 267

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  845 ETEKERVSLLETLLQTQKELADASQQLERlrQDMKVQKLKEQETTgiLQTQLQEAQrelkeaarQHRDDLAALQEESSSL 924
Cdd:PHA02562   268 KSKIEQFQKVIKMYEKGGVCPTCTQQISE--GPDRITKIKDKLKE--LQHSLEKLD--------TAIDELEEIMDEFNEQ 335

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217334293  925 LQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQ----EKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLV 993
Cdd:PHA02562   336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEelqaEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIV 408
PLN02939 PLN02939
transferase, transferring glycosyl groups
 1208-1449 6.51e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 45.28  E-value: 6.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1208 TELQDLQRQLSqnqeEKSKWEGKQNSLESELMELH-------------ETMASLQSRLRRAELQRMEAQG--------ER 1266
Cdd:PLN02939   153 QALEDLEKILT----EKEALQGKINILEMRLSETDariklaaqekihvEILEEQLEKLRNELLIRGATEGlcvhslskEL 228

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1267 ELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEEDlrtaRSALKLKNEEVESERERAQA-LQEQGELKVAQGKALQEN 1345
Cdd:PLN02939   229 DVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKE----RSLLDASLRELESKFIVAQEdVSKLSPLQYDCWWEKVEN 304

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1346 LALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDlKKRNQEVDLQQEQIQELEkcrsvlEHLPMAVQEREQK 1425
Cdd:PLN02939   305 LQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVS-KFSSYKVELLQQKLKLLE------ERLQASDHEIHSY 377

                          250       260
                   ....*....|....*....|....*....
gi 2217334293 1426 LTVQREQIRELEKD-----RETQRNVLEH 1449
Cdd:PLN02939   378 IQLYQESIKEFQDTlsklkEESKKRSLEH 406
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 559-785 7.11e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.37  E-value: 7.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  559 LRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQ 638
Cdd:COG4942     25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  639 EAKRQEEVLARAVQEKEALV-------REKAALEVRLQAVERDRQDLAEQLQglsSAKELLESSLFEAQQQNSVIEVTKG 711
Cdd:COG4942    105 ELAELLRALYRLGRQPPLALllspedfLDAVRRLQYLKYLAPARREQAEELR---ADLAELAALRAELEAERAELEALLA 181

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217334293  712 QLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKW 785
Cdd:COG4942    182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
PRK11281 PRK11281
mechanosensitive channel MscK;
794-1066 7.78e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 44.90  E-value: 7.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  794 QELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKErvSLLETLLQTQKELADASQQLER 873
Cdd:PRK11281    76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLVS 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  874 lrqdmkvqklkeqettgiLQTQLQEAQRELKEAARQhrddlaaLQEESSSLLQDKMDLQKQVEDLKSQLVAQddsQRLVE 953
Cdd:PRK11281   154 ------------------LQTQPERAQAALYANSQR-------LQQIRNLLKGGKVGGKALRPSQRVLLQAE---QALLN 205

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  954 QEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEAdsIRQQELSALRQDMQEAQGEQKELSAQM-ELLRQE 1032
Cdd:PRK11281   206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTVQEAQSQDEAARIQAnPLVAQE 283

                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 2217334293 1033 --VKEKEADFLAQEAQLLEELeashiTEQQLRASLW 1066
Cdd:PRK11281   284 leINLQLSQRLLKATEKLNTL-----TQQNLRVKNW 314
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1358-1578 7.79e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.91  E-value: 7.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1358 EEVETLRGQIQELEKQREmQKAALEllslDLKKRNQEVDLQQEQIQELEKCRSVLEHlpmavQEREQKLTVQREQIRELE 1437
Cdd:COG4913    232 EHFDDLERAHEALEDARE-QIELLE----PIRELAERYAAARERLAELEYLRAALRL-----WFAQRRLELLEAELEELR 301

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1438 KDR---ETQRNVLEHQLLELEKKDQMIESQR-----GQVQDLKKQLVTLeclaleleenhhkmecqQKLIKELEGQRETQ 1509
Cdd:COG4913    302 AELarlEAELERLEARLDALREELDELEAQIrgnggDRLEQLEREIERL-----------------ERELEERERRRARL 364

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1510 RVALTHLTLDLEERSQELQAQSSQIHDLeshSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLER 1578
Cdd:COG4913    365 EALLAALGLPLPASAEEFAALRAEAAAL---LEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1731-1955 7.89e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.37  E-value: 7.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1731 AQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEE 1810
Cdd:COG4942     18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1811 VLGDLRAESREQEKALLALQQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQ 1890
Cdd:COG4942     98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1891 EALGKAHAALQGKEQHLLEQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLR 1955
Cdd:COG4942    178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1970-2247 1.02e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.67  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1970 RDEELRHQQEREQLLE---KSLAQRVQENMIQEKQNLGQ-EREEEEIRGLHQSVRELQLTLAQKEQEILEL-RETQQRNN 2044
Cdd:TIGR02169  207 REKAERYQALLKEKREyegYELLKEKEALERQKEAIERQlASLEEELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGE 286

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2045 LEALPHSHKTSPMEEQSLKLDSLEPRLQRELERLQAALRQTEAR------EIE-WREKAQDLALSLAQTKASVSSLQEVA 2117
Cdd:TIGR02169  287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEidkllaEIEeLEREIEEERKRRDKLTEEYAELKEEL 366

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2118 MFLQASVLERDSEQQRLQDELELTRRALEK-ERLHSPGATSTAELGSRGEQGVQLG-----EVSGVEAEPSPDGMEKQSW 2191
Cdd:TIGR02169  367 EDLRAELEEVDKEFAETRDELKDYREKLEKlKREINELKRELDRLQEELQRLSEELadlnaAIAGIEAKINELEEEKEDK 446

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2217334293 2192 RQRLEHLQQAVARLEIDRSRLQRHNVQLRSTLEQVERERRKLKREAMRA-AQAGSLE 2247
Cdd:TIGR02169  447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAeAQARASE 503
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 420-1027 1.14e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 44.40  E-value: 1.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  420 QQQHDQWEEEGKALRQRLQKLTGERDTLAGQtvdLQGEVDSLSKEREL---LQKAREELRQQLEVLEQEAWRLRRVNVEL 496
Cdd:pfam01576   18 KERQQKAESELKELEKKHQQLCEEKNALQEQ---LQAETELCAEAEEMrarLAARKQELEEILHELESRLEEEEERSQQL 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  497 QLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQS 576
Cdd:pfam01576   95 QNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEK 174

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  577 IAELSssentlktevadlraaavKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEkea 656
Cdd:pfam01576  175 AKSLS------------------KLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAE--- 233

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  657 lvrekaaLEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKL 736
Cdd:pfam01576  234 -------LRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKT 306

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  737 EL-DTERSQAEQERDAAARQlaQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALE---SLEREKMELEM 812
Cdd:pfam01576  307 ELeDTLDTTAAQQELRSKRE--QEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRnkaNLEKAKQALES 384

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  813 RLKEQQTEMEAIQAQR---EEERTQAESALCQMQL---ETEKERVSLLETLLQTQKELADASQQLErlrqDMKVQKLKEQ 886
Cdd:pfam01576  385 ENAELQAELRTLQQAKqdsEHKRKKLEGQLQELQArlsESERQRAELAEKLSKLQSELESVSSLLN----EAEGKNIKLS 460

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  887 ETTGILQTQLQEAQRELKEAARQH----------RDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVaqdDSQRLVEQEV 956
Cdd:pfam01576  461 KDVSSLESQLQDTQELLQEETRQKlnlstrlrqlEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLS---DMKKKLEEDA 537

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217334293  957 QEKLRETQEYNRIQKELErekaSLTLSLMEKEQRLLVLQEADSIRQQELsalrQDMQEAQGEQKELSAQME 1027
Cdd:pfam01576  538 GTLEALEEGKKRLQRELE----ALTQQLEEKAAAYDKLEKTKNRLQQEL----DDLLVDLDHQRQLVSNLE 600
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1654-1875 1.22e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.60  E-value: 1.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1654 LRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQR 1733
Cdd:COG4942     36 IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYR 115

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1734 ALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALEqahmtlkerhgELQDHKEQARRLEEELAVEGRRVQALEEVLG 1813
Cdd:COG4942    116 LGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE-----------ELRADLAELAALRAELEAERAELEALLAELE 184

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217334293 1814 DLRAESREQEKALLALQQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSS 1875
Cdd:COG4942    185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 520-1088 1.26e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 44.19  E-value: 1.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  520 ERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAV 599
Cdd:TIGR00618  195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRA 274

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  600 KLSALNEAlaldkvglNQQLLQSRHQQEAATTQLEQLHQEAKRQeevlaRAVQEKEALVREKAALEVRLQAVERDRQDLA 679
Cdd:TIGR00618  275 QEAVLEET--------QERINRARKAAPLAAHIKAVTQIEQQAQ-----RIHTELQSKMRSRAKLLMKRAAHVKQQSSIE 341

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  680 EQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQ--IQTVTQAKEVIQGEVRCLKLELDTERSQAEQE--RDAAARQ 755
Cdd:TIGR00618  342 EQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTqhIHTLQQQKTTLTQKLQSLCKELDILQREQATIdtRTSAFRD 421

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  756 LAQ--AEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELEMrLKEQQTEMEAIQAQREEERT 833
Cdd:TIGR00618  422 LQGqlAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQ-IHLQETRKKAVVLARLLELQ 500

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  834 QAESALCQMQLETEKERVSLLETLLQTQKeladasqqLERLRQDMKVQKLKEQETTGILQTQLQEAQReLKEAARQHRDD 913
Cdd:TIGR00618  501 EEPCPLCGSCIHPNPARQDIDNPGPLTRR--------MQRGEQTYAQLETSEEDVYHQLTSERKQRAS-LKEQMQEIQQS 571

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  914 LAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEynriqkELEREKASLTLSLMEKEQRLLV 993
Cdd:TIGR00618  572 FSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP------EQDLQDVRLHLQQCSQELALKL 645

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  994 LqeadSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLLEELEASHITEQQLRASLWAQEAKAA 1073
Cdd:TIGR00618  646 T----ALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFN 721

                          570
                   ....*....|....*
gi 2217334293 1074 QLQLRLRSTESQLEA 1088
Cdd:TIGR00618  722 EIENASSSLGSDLAA 736
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
 816-1396 1.27e-03

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 44.41  E-value: 1.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  816 EQQTEMEAIQAQREEERTQAESALCQMQL--------ETEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLK--- 884
Cdd:PRK10246   217 QVQSLTASLQVLTDEEKQLLTAQQQQQQSlnwltrldELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRphw 296

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  885 ---EQETTGILQT--QLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLqkqvedlkSQLVAQDDSQRLVEQEV--- 956
Cdd:PRK10246   297 eriQEQSAALAHTrqQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSL--------NTWLAEHDRFRQWNNELagw 368

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  957 ----QEKLRETQEYNRIQKEL---EREKASL---TLSLMEKE---------------QRLLVLQEADSIRQQELSALRQD 1011
Cdd:PRK10246   369 raqfSQQTSDREQLRQWQQQLthaEQKLNALpaiTLTLTADEvaaalaqhaeqrplrQRLVALHGQIVPQQKRLAQLQVA 448

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1012 MQEAQGEQKELSAQMELLRQEVKEKEADFL----------------AQEAQL----------------LEELEASHITEQ 1059
Cdd:PRK10246   449 IQNVTQEQTQRNAALNEMRQRYKEKTQQLAdvkticeqearikdleAQRAQLqagqpcplcgstshpaVEAYQALEPGVN 528

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1060 QLRasLWAQEAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQAQLASlySALQQALGSVCES-RPELSGGGDSAPSVWG 1138
Cdd:PRK10246   529 QSR--LDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEE--QALTQQWQAVCASlNITLQPQDDIQPWLDA 604

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1139 LEPDQNGARSLFKRGPLLTALSAEAvasalHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEKS-------------Q 1205
Cdd:PRK10246   605 QEEHERQLRLLSQRHELQGQIAAHN-----QQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASwlatrqqeaqswqQ 679

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1206 VHTELQDLQRQLSQNQ-------EEKSKWEGKQNSLESELMELHETMASLQSRLrrAELQRMEAQgERELLQAAkenlTA 1278
Cdd:PRK10246   680 RQNELTALQNRIQQLTplletlpQSDDLPHSEETVALDNWRQVHEQCLSLHSQL--QTLQQQDVL-EAQRLQKA----QA 752

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1279 QVEHLQAAVVEARAQASAAGILEEDLRTARSALKlknEEVESERERAQALQEQGELKVAQGKALQ----------ENLAL 1348
Cdd:PRK10246   753 QFDTALQASVFDDQQAFLAALLDEETLTQLEQLK---QNLENQRQQAQTLVTQTAQALAQHQQHRpdgldltvtvEQIQQ 829

                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*...
gi 2217334293 1349 LTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVD 1396
Cdd:PRK10246   830 ELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVE 877
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
712-1064 1.27e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.99  E-value: 1.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  712 QLEVQIQTVTQAKEVIQGEVRCLK-----LELDTERSQAEQERDAAARQLAQAEQEGKT--ALEQQKAAHEKEVNQLREK 784
Cdd:COG4717     99 ELEEELEELEAELEELREELEKLEkllqlLPLYQELEALEAELAELPERLEELEERLEElrELEEELEELEAELAELQEE 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  785 WEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLL------ 858
Cdd:COG4717    179 LEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLliaaal 258

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  859 ---------------------------------QTQKELADASQQLERLRQDMKVQKLKEQETTGILQtQLQEAQRELKE 905
Cdd:COG4717    259 lallglggsllsliltiagvlflvlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLA-ALGLPPDLSPE 337

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  906 AARQHRDDLAALQEESSSLLQDKMDLQ-KQVEDLKSQLVAQDDSQRlvEQEVQEKLRETQEYNRIQKELEREKASLTLSL 984
Cdd:COG4717    338 ELLELLDRIEELQELLREAEELEEELQlEELEQEIAALLAEAGVED--EEELRAALEQAEEYQELKEELEELEEQLEELL 415

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  985 MEKEQRLLVLQEADsiRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLLEELEASHITEQQLRAS 1064
Cdd:COG4717    416 GELEELLEALDEEE--LEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWA 493
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
933-1385 1.42e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.99  E-value: 1.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  933 KQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLslMEKEQRLLVLQEADSIRQQELSALRQDM 1012
Cdd:COG4717     71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEK--LEKLLQLLPLYQELEALEAELAELPERL 148

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1013 QEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLLEELEASHITEQQLRASLWAQEAKAAQLQLRLRSTESQLEALAAE 1092
Cdd:COG4717    149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1093 QQPGNQAQAQAQLASLYSALQQALGsvcesrpelsgggdSAPSVWGLEPDQNGARSLFKRGPLLTALsaeaVASALHKLH 1172
Cdd:COG4717    229 LEQLENELEAAALEERLKEARLLLL--------------IAAALLALLGLGGSLLSLILTIAGVLFL----VLGLLALLF 290

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1173 QDLWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRL 1252
Cdd:COG4717    291 LLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQ 370

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1253 RRAELQRMEAQGERELLQAAKENLTAQVEhLQAAVVEARAQASAAGILEEDLRTARSALKLKNEEVESERERAQALQEQG 1332
Cdd:COG4717    371 EIAALLAEAGVEDEEELRAALEQAEEYQE-LKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELE 449

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2217334293 1333 ELKVAQGKALQENLALLT-QTLAEREEEVETLRGQIQELEKQREMQKAALELLS 1385
Cdd:COG4717    450 ELREELAELEAELEQLEEdGELAELLQELEELKAELRELAEEWAALKLALELLE 503
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
892-1090 1.44e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 43.35  E-value: 1.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  892 LQTQLQEAQRELKEAarqhRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQK 971
Cdd:COG4372     43 LQEELEQLREELEQA----REELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELE 118

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  972 ELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEAQLLEEL 1051
Cdd:COG4372    119 ELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEK 198

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 2217334293 1052 EASHITEQQLRASLWAQEAKAAQLQLRLRSTESQLEALA 1090
Cdd:COG4372    199 EEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSA 237
PTZ00121 PTZ00121
MAEBL; Provisional
 1198-1959 1.95e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 1.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1198 DTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQRME----AQGERELLQAAK 1273
Cdd:PTZ00121  1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEearkAEDAKRVEIARK 1159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1274 ENLTAQVEHLQAAVVEARAQASAAGI---------LEEDLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQE 1344
Cdd:PTZ00121  1160 AEDARKAEEARKAEDAKKAEAARKAEevrkaeelrKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA 1239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1345 NLAlltqtlaeREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKCRSVLEhlpMAVQEREQ 1424
Cdd:PTZ00121  1240 EEA--------KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE---KKKADEAK 1308

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1425 KLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLvtlECLALELEENHHKMECQQKLIKELEG 1504
Cdd:PTZ00121  1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA---EAAEEKAEAAEKKKEEAKKKADAAKK 1385

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1505 QRETQRVALthltlDLEERSQELQAQSSQIHDLESHSTVlARELQERDQEVKsqreQIEELQRQKEHltqdlERRDQELM 1584
Cdd:PTZ00121  1386 KAEEKKKAD-----EAKKKAEEDKKKADELKKAAAAKKK-ADEAKKKAEEKK----KADEAKKKAEE-----AKKADEAK 1450

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1585 LQKERIQVLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEVEcQ 1664
Cdd:PTZ00121  1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK-K 1529

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1665 QEHIHELQELKDQLEQQLQGLHRKVGEtsllLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRALAQRDQELEA 1744
Cdd:PTZ00121  1530 AEEAKKADEAKKAEEKKKADELKKAEE----LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1745 LQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEElavegRRVQALEEVlgdlRAESREQEK 1824
Cdd:PTZ00121  1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE-----NKIKAAEEA----KKAEEDKKK 1676

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1825 AllalqqqcaEQAQEHEVETRALQDSwLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAhaalQGKE 1904
Cdd:PTZ00121  1677 A---------EEAKKAEEDEKKAAEA-LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE----AEED 1742

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1905 QHLLEQAELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQED 1959
Cdd:PTZ00121  1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 408-942 2.19e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 43.29  E-value: 2.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  408 QLAGCQEAVNLLQQQHDQWEEEGKALRQRLqklTGERDTLAGQTVDLQGEVDSLSKERELLQKAR-EELRQQLEVLEQEA 486
Cdd:pfam12128  277 RQEERQETSAELNQLLRTLDDQWKEKRDEL---NGELSAADAAVAKDRSELEALEDQHGAFLDADiETAAADQEQLPSWQ 353

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  487 WRLRRVNVELQLQGDSAQGQKEEQQEELHLAVrerERLQEMLMGLEAKQsESLSELITLREALESSHLEG------ELLR 560
Cdd:pfam12128  354 SELENLEERLKALTGKHQDVTAKYNRRRSKIK---EQNNRDIAGIKDKL-AKIREARDRQLAVAEDDLQAleselrEQLE 429

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  561 QEQTEVTAALARAEQSIAELSSSENTLKTEVADLRAAAVKLSALNEAlaldkvglNQQLLQSRHQQEAATTQLEQLHQEA 640
Cdd:pfam12128  430 AGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERA--------REEQEAANAEVERLQSELRQARKRR 501

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  641 KRQEEVLARAVQEKEALVREKAALEVRLQA--------VERDRQDLAEQLQGLSSAKELLESSL------FEAQQQNSVI 706
Cdd:pfam12128  502 DQASEALRQASRRLEERQSALDELELQLFPqagtllhfLRKEAPDWEQSIGKVISPELLHRTDLdpevwdGSVGGELNLY 581

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  707 EVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQ------------------ERDAAA---------RQLAQA 759
Cdd:pfam12128  582 GVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAaeeqlvqangelekasreETFARTalknarldlRRLFDE 661

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  760 EQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEME--------AIQAQREEE 831
Cdd:pfam12128  662 KQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEgaldaqlaLLKAAIAAR 741

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  832 RTQAESALCQMQLETEKERVSL---LETLLQTQKELADASQQLERLRQD-MKVQKLKE--QETTGILQTQLQEAQRELKE 905
Cdd:pfam12128  742 RSGAKAELKALETWYKRDLASLgvdPDVIAKLKREIRTLERKIERIAVRrQEVLRYFDwyQETWLQRRPRLATQLSNIER 821

                          570       580       590
                   ....*....|....*....|....*....|....*..
gi 2217334293  906 AARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQL 942
Cdd:pfam12128  822 AISELQQQLARLIADTKLRRAKLEMERKASEKQQVRL 858
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 250-1065 2.33e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 43.50  E-value: 2.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  250 LAKTQELEKEAHERSQELIQLKSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTELMEHEAS 329
Cdd:TIGR00606  191 LRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNE 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  330 LsRNAQEEKLSLQQVIKDITQVMVEegdnIAQGSGHENSlelDSSIFSQFDYQDADKALTLVRSVLTRRRQAVQDLRQQL 409
Cdd:TIGR00606  271 I-KALKSRKKQMEKDNSELELKMEK----VFQGTDEQLN---DLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEK 342

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  410 AGCQEAVNLLQQQHDQWEEEGKALRQRLQKLTgerdtlagqtvdLQGEVDSLSKERELLQKAREELRQQLEVLEQEAWRL 489
Cdd:TIGR00606  343 TELLVEQGRLQLQADRHQEHIRARDSLIQSLA------------TRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTA 410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  490 RRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLmgleAKQSESLSELITLREALESSHLEGELLRQEQTEVTAA 569
Cdd:TIGR00606  411 AQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEIL----EKKQEELKFVIKELQQLEGSSDRILELDQELRKAERE 486

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  570 LARAEQ--SIAELSSSENTLKTEVADL----RAAAVKLSALN---------EALALDKVGLNQQLLQSRHQQEAATTQLE 634
Cdd:TIGR00606  487 LSKAEKnsLTETLKKEVKSLQNEKADLdrklRKLDQEMEQLNhhtttrtqmEMLTKDKMDKDEQIRKIKSRHSDELTSLL 566

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  635 QLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEA---QQQNSVIEVTKG 711
Cdd:TIGR00606  567 GYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsQDEESDLERLKE 646

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  712 QLE--------------VQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKE 777
Cdd:TIGR00606  647 EIEksskqramlagataVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  778 V----NQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQRE--EERTQAESALCQMQLETEKERV 851
Cdd:TIGR00606  727 EmlglAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEEsaKVCLTDVTIMERFQMELKDVER 806

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  852 SLLETLLQTQKELADASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDL 931
Cdd:TIGR00606  807 KIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQF 886

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  932 QKQVEDLKSQL------VAQDDSQRLVEQEVQEKLRETQEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQEL 1005
Cdd:TIGR00606  887 EEQLVELSTEVqslireIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD 966

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1006 SALRQDMQEaQGEQKELSAQMELLRQEVKEKEADFlaqeAQLLEELEASHITEQQLRASL 1065
Cdd:TIGR00606  967 GKDDYLKQK-ETELNTVNAQLEECEKHQEKINEDM----RLMRQDIDTQKIQERWLQDNL 1021
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
 621-983 2.34e-03

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 42.75  E-value: 2.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  621 QSRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQ 700
Cdd:pfam19220   31 QLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELR 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  701 QQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLEL---DTERSQAEQERDAAARQLAQAEQEGKtaleQQKAAHEKE 777
Cdd:pfam19220  111 IELRDKTAQAEALERQLAAETEQNRALEEENKALREEAqaaEKALQRAEGELATARERLALLEQENR----RLQALSEEQ 186

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  778 VNQLREKWEKerswhQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERT--QAESALCQMQLETEKERVSLLE 855
Cdd:pfam19220  187 AAELAELTRR-----LAELETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEahRAERASLRMKLEALTARAAATE 261

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  856 TLLQ----TQKELADASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAARQhRDDLAALQEESSSLLQDKMDL 931
Cdd:pfam19220  262 QLLAearnQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRA-RAELEERAEMLTKALAAKDAA 340

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2217334293  932 QKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEynRIQKELEREKASLTLS 983
Cdd:pfam19220  341 LERAEERIASLSDRIAELTKRFEVERAALEQANR--RLKEELQRERAERALA 390
mukB PRK04863
chromosome partition protein MukB;
769-1092 2.36e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 43.41  E-value: 2.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  769 QQKAAHEKEVNQLREKWEKERSWHQqELAKALESLEREKMELEMRLKE----QQTEMEAIQAQREEERTQAESALCQMQL 844
Cdd:PRK04863   286 EEALELRRELYTSRRQLAAEQYRLV-EMARELAELNEAESDLEQDYQAasdhLNLVQTALRQQEKIERYQADLEELEERL 364

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  845 ETEKERVSLL-ETLLQTQKELADASQQLERLRQDMK--VQKLKEQETTGIlqtQLQEAQRELKEAARQ-HRDDLAAlqee 920
Cdd:PRK04863   365 EEQNEVVEEAdEQQEENEARAEAAEEEVDELKSQLAdyQQALDVQQTRAI---QYQQAVQALERAKQLcGLPDLTA---- 437

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  921 sssllqdkmdlqKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYN-----------RIQKELEREKASltlslmEKEQ 989
Cdd:PRK04863   438 ------------DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHsqfeqayqlvrKIAGEVSRSEAW------DVAR 499

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  990 RLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQEVKEKEADFLAQEaqlleELEASHITEQQLRASLWAQE 1069
Cdd:PRK04863   500 ELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDED-----ELEQLQEELEARLESLSESV 574

                          330       340
                   ....*....|....*....|...
gi 2217334293 1070 AKAAQLQLRLRSTESQLEALAAE 1092
Cdd:PRK04863   575 SEARERRMALRQQLEQLQARIQR 597
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 462-690 2.56e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.83  E-value: 2.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  462 SKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAVRERERLQEMLMGLEAKQSESLSE 541
Cdd:COG4942     19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  542 LITLREALesSHLEGELLRQEQTEVTAALARAEqSIAELSSSENTLKTEVADLRAAAVKLSALNEALAldkvglnqqllQ 621
Cdd:COG4942     99 LEAQKEEL--AELLRALYRLGRQPPLALLLSPE-DFLDAVRRLQYLKYLAPARREQAEELRADLAELA-----------A 164

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217334293  622 SRHQQEAATTQLEQLHQEAKRQEEVLARAVQEKEALV----REKAALEVRLQAVERDRQDLAEQLQGLSSAKE 690
Cdd:COG4942    165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLarleKELAELAAELAELQQEAEELEALIARLEAEAA 237
PTZ00491 PTZ00491
major vault protein; Provisional
 747-867 2.84e-03

major vault protein; Provisional


Pssm-ID: 240439 [Multi-domain]  Cd Length: 850  Bit Score: 43.08  E-value: 2.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  747 QERDAAARQLAQA-EQEGKTALEQQKAAHEKEVNQLREKWEKERSwHQQELAKALESLEREKMELEMRLKEQQTEMEAIQ 825
Cdd:PTZ00491   662 KSQEAAARHQAELlEQEARGRLERQKMHDKAKAEEQRTKLLELQA-ESAAVESSGQSRAEALAEAEARLIEAEAEVEQAE 740

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2217334293  826 AQREEERTQAESALCQMQLETEKE---RVSLLETLLQTQKELADA 867
Cdd:PTZ00491   741 LRAKALRIEAEAELEKLRKRQELEleyEQAQNELEIAKAKELADI 785
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1418-1647 3.12e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.44  E-value: 3.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1418 AVQEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMECQQK 1497
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1498 LIKELEGQ--RETQRVALTHLTLDLEERSQELQAQSSQ--IHDLESHSTVLARELQERDQEVKSQREQIEELQRQKEHLT 1573
Cdd:COG4942    101 AQKEELAEllRALYRLGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293 1574 QDLERRDQELMLQKERIQVLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGK-GPSKAQRGSL 1647
Cdd:COG4942    181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPaAGFAALKGKL 255
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 431-911 3.13e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 43.12  E-value: 3.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  431 KALRQRLQKLTGERDTLAGQTVD-LQGEVDSLSKERELLQKARE-------------ELRQQLEVLEQEawrlrRVNVEL 496
Cdd:PRK10929    26 KQITQELEQAKAAKTPAQAEIVEaLQSALNWLEERKGSLERAKQyqqvidnfpklsaELRQQLNNERDE-----PRSVPP 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  497 QLQGDSAQGQKEEQQEEL----HLAVRERERLQEMlmgleakqSESLSelitlrealesshlegeLLRQEQTEVTAALAR 572
Cdd:PRK10929   101 NMSTDALEQEILQVSSQLleksRQAQQEQDRAREI--------SDSLS-----------------QLPQQQTEARRQLNE 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  573 AEQSIAELSSSENTL-KTEVADLRAAAVKLSALNEALALDKVGLNQ---------QLLQSRHQQEAATTQLEQLHQEAKR 642
Cdd:PRK10929   156 IERRLQTLGTPNTPLaQAQLTALQAESAALKALVDELELAQLSANNrqelarlrsELAKKRSQQLDAYLQALRNQLNSQR 235

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  643 QEEVlARAVQEKEALVREKAALEvrlqaverdrQDLAEQLQglssAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQ 722
Cdd:PRK10929   236 QREA-ERALESTELLAEQSGDLP----------KSIVAQFK----INRELSQALNQQAQRMDLIASQQRQAASQTLQVRQ 300

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  723 AkeviqgevrclkleLDTERSQAEQerdaaarqlaqaeqegktaLEQQKAAHEKEVNQLREKWEKERSwhqQELAKALES 802
Cdd:PRK10929   301 A--------------LNTLREQSQW-------------------LGVSNALGEALRAQVARLPEMPKP---QQLDTEMAQ 344

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  803 LEREKMELEMRLKEQQTEMEAIQAQREEertqaesalcqmqLETEKERVslLETLLQTQKELADA------SQQLErlrq 876
Cdd:PRK10929   345 LRVQRLRYEDLLNKQPQLRQIRQADGQP-------------LTAEQNRI--LDAQLRTQRELLNSllsggdTLILE---- 405

                          490       500       510
                   ....*....|....*....|....*....|....*
gi 2217334293  877 dmkVQKLKeqettgILQTQLQEAQRELKEAArqHR 911
Cdd:PRK10929   406 ---LTKLK------VANSQLEDALKEVNEAT--HR 429
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
1538-1631 3.39e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 42.54  E-value: 3.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1538 ESHSTVLARELQERDQEVKSQREQIEELQRQKEHLTQDLERRDQEL---------MLQKERIQVLEDqrtRQTKILEEDL 1608
Cdd:COG2433    398 EREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIerlerelseARSEERREIRKD---REISRLDREI 474

                           90       100
                   ....*....|....*....|....*.
gi 2217334293 1609 EQIKLSL---RERGRELTTQRQLMQE 1631
Cdd:COG2433    475 ERLERELeeeRERIEELKRKLERLKE 500
mukB PRK04863
chromosome partition protein MukB;
1783-2161 3.71e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.64  E-value: 3.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1783 ELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQ----------------CAEQAQEHEVETRA 1846
Cdd:PRK04863   280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDyqaasdhlnlvqtalrQQEKIERYQADLEE 359

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1847 LQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEAL-------GKAHAALQG--KEQHLLEQAELS-RS 1916
Cdd:PRK04863   360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALdvqqtraIQYQQAVQAleRAKQLCGLPDLTaDN 439

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1917 LEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQ-----------EDVQQLQQALAQRDEELRHQQEREQLLE 1985
Cdd:PRK04863   440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQlvrkiagevsrSEAWDVARELLRRLREQRHLAEQLQQLR 519

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1986 KSLAQRvqenmiqeKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILELRETQqrnnLEALphshktspmEEQSLKLD 2065
Cdd:PRK04863   520 MRLSEL--------EQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEAR----LESL---------SESVSEAR 578

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2066 SLEPRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQAsVLERDSEQQRLQDELELTRRAL 2145
Cdd:PRK04863   579 ERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQ-LLERERELTVERDELAARKQAL 657

                          410
                   ....*....|....*...
gi 2217334293 2146 EK--ERLHSPGATSTAEL 2161
Cdd:PRK04863   658 DEeiERLSQPGGSEDPRL 675
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 748-1402 4.18e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 42.63  E-value: 4.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  748 ERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSwhQQELAKALESLE------------REKM------- 808
Cdd:COG3096    279 ERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSAR--ESDLEQDYQAASdhlnlvqtalrqQEKIeryqedl 356

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  809 -ELEMRLKEQQTEMEAIQAQREEERTQAEsaLCQMQLETEKERVSLLETLLQTQKELADASQQ-LERLRQDMKVQKLKE- 885
Cdd:COG3096    357 eELTERLEEQEEVVEEAAEQLAEAEARLE--AAEEEVDSLKSQLADYQQALDVQQTRAIQYQQaVQALEKARALCGLPDl 434

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  886 -----QETTGILQTQLQEAQREL----------KEAARQHRDDLAALQ------------EESSSLLQDKMDLQ---KQV 935
Cdd:COG3096    435 tpenaEDYLAAFRAKEQQATEEVleleqklsvaDAARRQFEKAYELVCkiageversqawQTARELLRRYRSQQalaQRL 514

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  936 EDLKSQLvaQDDSQRLVEQEVQEKLREtqEYNRIQKELEREKASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEA 1015
Cdd:COG3096    515 QQLRAQL--AELEQRLRQQQNAERLLE--EFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQL 590

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1016 QGEQKELSAQ----------MELLRQEVKEKEAD---FLAQEAQLLEELEASHITEQQLRASLWAQEAKAAQLQLRLRST 1082
Cdd:COG3096    591 RARIKELAARapawlaaqdaLERLREQSGEALADsqeVTAAMQQLLEREREATVERDELAARKQALESQIERLSQPGGAE 670

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1083 ESQLEALA--------AEQQPGNQAQAQAQLASLYSALQQAL--GSVCESRPELSGGGDSAPSVWGLEPD---------- 1142
Cdd:COG3096    671 DPRLLALAerlggvllSEIYDDVTLEDAPYFSALYGPARHAIvvPDLSAVKEQLAGLEDCPEDLYLIEGDpdsfddsvfd 750

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1143 ----------QNGAR----SLFKRGPLLTALSAEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLT----------- 1197
Cdd:COG3096    751 aeeledavvvKLSDRqwrySRFPEVPLFGRAAREKRLEELRAERDELAEQYAKASFDVQKLQRLHQAFSqfvgghlavaf 830

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1198 --DTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETM--------ASLQSRLRRAELQRMEAQGERE 1267
Cdd:COG3096    831 apDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLpqanlladETLADRLEELREELDAAQEAQA 910

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1268 LLQAAKENLT-------------AQVEHLQAAVVEARAQ-----------------------ASAAGILEEDlRTARSAL 1311
Cdd:COG3096    911 FIQQHGKALAqleplvavlqsdpEQFEQLQADYLQAKEQqrrlkqqifalsevvqrrphfsyEDAVGLLGEN-SDLNEKL 989

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1312 KLKNEEVESERERA------------QALQEQGELKVAQGkALQENLALLTQTLA-------------------EREEEV 1360
Cdd:COG3096    990 RARLEQAEEARREAreqlrqaqaqysQYNQVLASLKSSRD-AKQQTLQELEQELEelgvqadaeaeerarirrdELHEEL 1068

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|..
gi 2217334293 1361 ETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQI 1402
Cdd:COG3096   1069 SQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQV 1110
mukB PRK04863
chromosome partition protein MukB;
636-975 4.94e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.25  E-value: 4.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  636 LHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESslfEAQQQNSVIEVTKgQLEV 715
Cdd:PRK04863   291 LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK---IERYQADLEELEE-RLEE 366

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  716 QIQTVTQAKEViqgevrclKLELDTERSQAEQERDAAARQLAQAEQegktALE-QQKAAheKEVNQLREKWEKERSW--- 791
Cdd:PRK04863   367 QNEVVEEADEQ--------QEENEARAEAAEEEVDELKSQLADYQQ----ALDvQQTRA--IQYQQAVQALERAKQLcgl 432

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  792 ---HQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEeRTQAESALCQMQLETEKER-----VSLLETLlQTQKE 863
Cdd:PRK04863   433 pdlTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQ-FEQAYQLVRKIAGEVSRSEawdvaRELLRRL-REQRH 510

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  864 LADASQQLErlrqdmkvQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLV 943
Cdd:PRK04863   511 LAEQLQQLR--------MRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRM 582

                          330       340       350
                   ....*....|....*....|....*....|..
gi 2217334293  944 AQDDSQRLVEQEVQEKLRETQEYNRIQKELER 975
Cdd:PRK04863   583 ALRQQLEQLQARIQRLAARAPAWLAAQDALAR 614
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 1500-2146 5.02e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.26  E-value: 5.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1500 KELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEElQRQKEHLTQDLERR 1579
Cdd:TIGR00618  190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEE-QLKKQQLLKQLRAR 268

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1580 DQELMLQKERIQVLEDQRTRQTKILEEDLEQIKLSL--RERGRELTTQRQLMQERAEE--GKGPSKAQRGSLEHMKLILR 1655
Cdd:TIGR00618  269 IEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQieQQAQRIHTELQSKMRSRAKLlmKRAAHVKQQSSIEEQRRLLQ 348

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1656 DKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQREQEIVVLQQQLQEAREQGELKEQSLQSQLDEAQRAL 1735
Cdd:TIGR00618  349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1736 AQRDQELEALQQEQQQAQGQEERVKEKADalQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGDL 1815
Cdd:TIGR00618  429 AKKQQELQQRYAELCAAAITCTAQCEKLE--KIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPL 506

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1816 RAESREQEKALLALQqqcaeqaqehevETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQEALgk 1895
Cdd:TIGR00618  507 CGSCIHPNPARQDID------------NPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF-- 572

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1896 ahAALQGKEQHLLEQAELSRSLEAStatLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQedvqqlqqalaqRDEELR 1975
Cdd:TIGR00618  573 --SILTQCDNRSKEDIPNLQNITVR---LQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD------------VRLHLQ 635

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1976 HQQEREQLLEKSLAqrvqenmiQEKQNLGQEREEEEIRGLHQsVRELQLTLAQKEQEILELRETQQRNNLEALPHSHKTS 2055
Cdd:TIGR00618  636 QCSQELALKLTALH--------ALQLTLTQERVREHALSIRV-LPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLL 706

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 2056 PMEEQSLKLDSlepRLQRELERLQAALRQTEAREIEWREKAQDLALSLAQTKASVSSLQEVAMFLQASVLE-RDSEQQRL 2134
Cdd:TIGR00618  707 RELETHIEEYD---REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALqTGAELSHL 783

                          650
                   ....*....|..
gi 2217334293 2135 QDELELTRRALE 2146
Cdd:TIGR00618  784 AAEIQFFNRLRE 795
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1758-1980 5.07e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.21  E-value: 5.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1758 RVKEKADALQGALEqahmTLKERHGELQDHKEQARRLE------EELAVEGRRVQALEEVLGDLRAESREQEKALLAlqq 1831
Cdd:COG4913    222 DTFEAADALVEHFD----DLERAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAALRLWFAQRRLELLE--- 294

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1832 qcaEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAAraraeaLQEALGKAHAALQGKEQHLLEQA 1911
Cdd:COG4913    295 ---AELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ------LEREIERLERELEERERRRARLE 365

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217334293 1912 ELSRSLEASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQER 1980
Cdd:COG4913    366 ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1330-1716 5.08e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.06  E-value: 5.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1330 EQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKR--NQEVDLQQEQIQELEK 1407
Cdd:COG4717     74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEalEAELAELPERLEELEE 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1408 CRSVLEHLPMAVQEREQKLTVQREQIRELEKDRETQrnvlehQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEE 1487
Cdd:COG4717    154 RLEELRELEEELEELEAELAELQEELEELLEQLSLA------TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1488 NHHKMECQQKLIKELEGQRETQRVALTH-LTLDLEERSQELQAQSSQIHDLeshSTVLARELQERDQEVKSQREQIEELQ 1566
Cdd:COG4717    228 ELEQLENELEAAALEERLKEARLLLLIAaALLALLGLGGSLLSLILTIAGV---LFLVLGLLALLFLLLAREKASLGKEA 304

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1567 RQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQTKILEEDLEQIKLSLRERgRELTTQRQLMQERAEEGKGPSKAQRGS 1646
Cdd:COG4717    305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA-EELEEELQLEELEQEIAALLAEAGVED 383

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1647 LEhmklILRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSllLSQREQEIVVLQQQLQEAREQ 1716
Cdd:COG4717    384 EE----ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD--EEELEEELEELEEELEELEEE 447
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 1495-1758 5.17e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.03  E-value: 5.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1495 QQKLIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQR-QKEHLT 1573
Cdd:pfam17380  280 HQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERiRQEERK 359

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1574 QDLER-RDQELMLQKERIQVLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKL 1652
Cdd:pfam17380  360 RELERiRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1653 ILRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKVGETSLLLSQR----EQEIVVLQQQLQEARE---QGELKEQSLQ 1725
Cdd:pfam17380  440 LEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRkraeEQRRKILEKELEERKQamiEEERKRKLLE 519

                          250       260       270
                   ....*....|....*....|....*....|...
gi 2217334293 1726 SQLDEAQRALAQRDQELEALQQEQQQAQGQEER 1758
Cdd:pfam17380  520 KEMEERQKAIYEEERRREAEEERRKQQEMEERR 552
PRK12704 PRK12704
phosphodiesterase; Provisional
 946-1092 5.63e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 41.69  E-value: 5.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  946 DDSQRLVEQEVQEKLRETQ-EYNRIQKELEREKASLTLSLMEKEQRLlvLQEADSIRqQELSALRQDMQEAQGEQKELSA 1024
Cdd:PRK12704    45 EEAKKEAEAIKKEALLEAKeEIHKLRNEFEKELRERRNELQKLEKRL--LQKEENLD-RKLELLEKREEELEKKEKELEQ 121

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217334293 1025 QMEllrqEVKEKEADFLAQEAQLLEELEasHIteqqlrASLWAQEAKaaqlQLRLRSTESQLEALAAE 1092
Cdd:PRK12704   122 KQQ----ELEKKEEELEELIEEQLQELE--RI------SGLTAEEAK----EILLEKVEEEARHEAAV 173
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
278-830 6.20e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.97  E-value: 6.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  278 KAELQDRVTELSALLTQSQKQNEDYEKMIKALRETVEILETNHTELMEHEASLSrNAQEEKLSLQQVIKDITQVMVEEGD 357
Cdd:PRK03918   188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEKIRELEE 266

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  358 NIAQGSGHENSLEldssifsqfdyqDADKALTLVRSVLTRRRQAVQDLRQQLAGCQEavnlLQQQHDQWEEEGKALRQRL 437
Cdd:PRK03918   267 RIEELKKEIEELE------------EKVKELKELKEKAEEYIKLSEFYEEYLDELRE----IEKRLSRLEEEINGIEERI 330

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  438 QKLTgerdtlagqtvDLQGEVDSLSKERELLQKAREELRQQLEVLEqeawRLRRVNVELQ-LQGDSAQGQKEEQQEELHL 516
Cdd:PRK03918   331 KELE-----------EKEERLEELKKKLKELEKRLEELEERHELYE----EAKAKKEELErLKKRLTGLTPEKLEKELEE 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  517 AVRERERLQEMLMGLEAKQSESLSELITLREALE----------------SSHLEGELLRqeqtEVTAALARAEQSIAEL 580
Cdd:PRK03918   396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEelkkakgkcpvcgrelTEEHRKELLE----EYTAELKRIEKELKEI 471

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  581 SSSENTLK---TEVADLRAAAVKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQLHQEA---KRQEEVLARAVQEK 654
Cdd:PRK03918   472 EEKERKLRkelRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLiklKGEIKSLKKELEKL 551

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  655 EALVREKAALEVRLQAVERDRQDLAEQLQ--GLSSAKELlesslfeaqqqnsviEVTKGQLEVQIQTVTQAKEVIQgEVR 732
Cdd:PRK03918   552 EELKKKLAELEKKLDELEEELAELLKELEelGFESVEEL---------------EERLKELEPFYNEYLELKDAEK-ELE 615

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  733 CLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREKWEKERSWHQQELAKaLESLEREKMELEM 812
Cdd:PRK03918   616 REEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAE-LEELEKRREEIKK 694

                          570
                   ....*....|....*...
gi 2217334293  813 RLKEQQTEMEAIQAQREE 830
Cdd:PRK03918   695 TLEKLKEELEEREKAKKE 712
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 668-909 6.23e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 6.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  668 LQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAKEVIQGEVRclklELDTERSQAEQ 747
Cdd:COG4942     15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA----ALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  748 ERDAAARQLAQAEQEGKTALeqQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQ 827
Cdd:COG4942     91 EIAELRAELEAQKEELAELL--RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  828 REEERTQAESALcqmqLETEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQEttgiLQTQLQEAQRELKEAA 907
Cdd:COG4942    169 LEAERAELEALL----AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE----LEALIARLEAEAAAAA 240


                   ..
gi 2217334293  908 RQ 909
Cdd:COG4942    241 ER 242
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 616-974 6.23e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.65  E-value: 6.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  616 NQQLLQSRHQQEaattQLEQLHQEAKRQE-EVLARAVQEKEALVREKAAlevRLQAVERDRQDLAEQLQ-GLSSAKELLE 693
Cdd:pfam17380  280 HQKAVSERQQQE----KFEKMEQERLRQEkEEKAREVERRRKLEEAEKA---RQAEMDRQAAIYAEQERmAMERERELER 352

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  694 SSLFEAQQQNSviEVTKGQLEVQIQTVTqakeviqgEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKaa 773
Cdd:pfam17380  353 IRQEERKRELE--RIRQEEIAMEISRMR--------ELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKV-- 420

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  774 hekEVNQLREKWEKERswhQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQaesalcQMQLETEKERVSL 853
Cdd:pfam17380  421 ---EMEQIRAEQEEAR---QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRK------KLELEKEKRDRKR 488

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  854 LETLLQTQKEladasQQLERLRQDMkvqkLKEQETTGILQTQLQEAQRELKEAARQHrddlaalQEESSSLLQDKMDLQK 933
Cdd:pfam17380  489 AEEQRRKILE-----KELEERKQAM----IEEERKRKLLEKEMEERQKAIYEEERRR-------EAEEERRKQQEMEERR 552

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 2217334293  934 QVEDlKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELE 974
Cdd:pfam17380  553 RIQE-QMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
993-1578 6.31e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 6.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  993 VLQEADSIRQQ--ELSALRQDMQEAQgeqkelsAQMELLRQevkekeadfLAQEAQLLEELEASHITEQQLRASL--WAQ 1068
Cdd:COG4913    223 TFEAADALVEHfdDLERAHEALEDAR-------EQIELLEP---------IRELAERYAAARERLAELEYLRAALrlWFA 286

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1069 EAKAAQLQLRLRSTESQLEALAAEQQPGNQAQAQAQLAslYSALQQALGSvcesrpelSGGGDSAPsvwgLEPDQNGARS 1148
Cdd:COG4913    287 QRRLELLEAELEELRAELARLEAELERLEARLDALREE--LDELEAQIRG--------NGGDRLEQ----LEREIERLER 352

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1149 LFKRgpllTALSAEAVASALHKLHqdlWKTQQTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWE 1228
Cdd:COG4913    353 ELEE----RERRRARLEALLAALG---LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1229 GKQNSLESELMELHETMASLQSRLRRAeLQRMEAQ----GerELLQAAKENltaqvEHLQAAV------------VEARA 1292
Cdd:COG4913    426 AEIASLERRKSNIPARLLALRDALAEA-LGLDEAElpfvG--ELIEVRPEE-----ERWRGAIervlggfaltllVPPEH 497

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1293 QASAAGILEE-DLRTARSALKLKNEEVESERERAQALQEQGELKVAQGKALQENLALLTQTLA----EREEEVE------ 1361
Cdd:COG4913    498 YAAALRWVNRlHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFDyvcvDSPEELRrhprai 577

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1362 TLRGQIQELEKQREMQKAALELLSLDLKKRNQE-VDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQREQIRELEKDR 1440
Cdd:COG4913    578 TRAGQVKGNGTRHEKDDRRRIRSRYVLGFDNRAkLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYS 657

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1441 ETQRNV--LEHQLLELEKKDQMIESQRGQVQDLKKQLVTLECLALELEENHHKMecqQKLIKELEGQRETQRVALTHLTL 1518
Cdd:COG4913    658 WDEIDVasAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDEL---KGEIGRLEKELEQAEEELDELQD 734

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1519 DLEERSQELQAQSSQihDLESHSTVLARELQERdQEVKSQREQIEELQRQKEHLTQDLER 1578
Cdd:COG4913    735 RLEAAEDLARLELRA--LLEERFAAALGDAVER-ELRENLEERIDALRARLNRAEEELER 791
mukB PRK04863
chromosome partition protein MukB;
443-1297 6.36e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.87  E-value: 6.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  443 ERDTLAGQTVDLQGEVDSLSKERELLQKAREELRQQLEVLEQeawrlRRVNVELQLQGDSAqgqkeeqqeelHLA-VRER 521
Cdd:PRK04863   280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNE-----AESDLEQDYQAASD-----------HLNlVQTA 343

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  522 ERLQEMLmgleAKQSESLSELitlREALESSHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKT--EVADLRA--- 596
Cdd:PRK04863   344 LRQQEKI----ERYQADLEEL---EERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQalDVQQTRAiqy 416

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  597 -----AAVKLSALNEALALDKVGLNQQLLQSRHQQEAATTQLEQL------HQEAKRQEEVLARAVQEKEALVREKAALE 665
Cdd:PRK04863   417 qqavqALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLeqklsvAQAAHSQFEQAYQLVRKIAGEVSRSEAWD 496

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  666 VRLQAVERDRQD--LAEQLQGLSSAKELLESSLFEAQQQNSVIEVTKGQLEVQIQTVTQAkEVIQGEVRCLKLELDTERS 743
Cdd:PRK04863   497 VARELLRRLREQrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDEL-EQLQEELEARLESLSESVS 575

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  744 QAEQERDAAARQLAQAEQEGK--TALEQQKAAHEKEVNQLREKWEKERSWHQQELAKALESLEREKmelEMRLKEQQTEM 821
Cdd:PRK04863   576 EARERRMALRQQLEQLQARIQrlAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERER---ELTVERDELAA 652

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  822 EAIQAQREEERTQAESALCQMQLETEKERVS-LLETLLQTQKELADA---SQQLERLRQDMKVQKLKEQETTGILQTQLQ 897
Cdd:PRK04863   653 RKQALDEEIERLSQPGGSEDPRLNALAERFGgVLLSEIYDDVSLEDApyfSALYGPARHAIVVPDLSDAAEQLAGLEDCP 732

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  898 EAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKS----------QLVAQDDSQRLVEQEVQEKLR-ETQEY 966
Cdd:PRK04863   733 EDLYLIEGDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEvplfgraareKRIEQLRAEREELAERYATLSfDVQKL 812

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  967 NRIQKELEREKAS-LTLSLM-EKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQMELLRQevKEKEADFLAQE 1044
Cdd:PRK04863   813 QRLHQAFSRFIGShLAVAFEaDPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNR--LLPRLNLLADE 890

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1045 --AQLLEELEASHITEQQLRASLWAQEAKAAQLQ---LRLRSTESQLEALAAEQQPGNQAQAQAQLASLysalqqALGSV 1119
Cdd:PRK04863   891 tlADRVEEIREQLDEAEEAKRFVQQHGNALAQLEpivSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAF------ALTEV 964

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1120 CESRPELSGggdsapsvwglepdQNGARSLfkrgplltalsaEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTdt 1199
Cdd:PRK04863   965 VQRRAHFSY--------------EDAAEML------------AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLA-- 1016

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1200 eaEKSQVHTELQ---DLQRQLSQNQEEKSKWEGKQNSLESElMELHETMASLQSRLRRAELQRMEAQGERELLQAAKENL 1276
Cdd:PRK04863  1017 --QYNQVLASLKssyDAKRQMLQELKQELQDLGVPADSGAE-ERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNL 1093

                          890       900
                   ....*....|....*....|.
gi 2217334293 1277 TAQVEHLQAAVVEARAQASAA 1297
Cdd:PRK04863  1094 TKKLRKLERDYHEMREQVVNA 1114
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
625-959 6.36e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.43  E-value: 6.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  625 QQEAATTQLEQLHQEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNS 704
Cdd:COG4372     32 QLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAE 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  705 VIEVTKGQLEVQIQTVTQAKEVIQGEVRCLKLELDTERSQAEQERDAAARQLAQAEQEGKTALEQQKAAHEKEVNQLREK 784
Cdd:COG4372    112 ELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKE 191

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  785 WEkERSWHQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQMQLETEKERVSLLETLLQTQKEL 864
Cdd:COG4372    192 AN-RNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVE 270

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  865 ADASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVA 944
Cdd:COG4372    271 KDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGL 350

                          330
                   ....*....|....*
gi 2217334293  945 QDDSQRLVEQEVQEK 959
Cdd:COG4372    351 LDNDVLELLSKGAEA 365
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 720-849 6.75e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 41.74  E-value: 6.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  720 VTQAKEVIQGEVrcLKLE-----LDTERSQAEQERDAAARQLAQAEQEgKTALEQQKaahekevNQLREKWEKERSWHQQ 794
Cdd:PRK00409   504 IEEAKKLIGEDK--EKLNeliasLEELERELEQKAEEAEALLKEAEKL-KEELEEKK-------EKLQEEEDKLLEEAEK 573

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2217334293  795 ELAKALESLEREKMELEMRLKEQQTEMEAiqAQREEERTQAESALCQMQLETEKE 849
Cdd:PRK00409   574 EAQQAIKEAKKEADEIIKELRQLQKGGYA--SVKAHELIEARKRLNKANEKKEKK 626
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
708-875 8.09e-03

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 40.80  E-value: 8.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  708 VTKGQLEVQIQTVtqakeviqgevrclklELDTERSQAEQERDAAARQLAQAEQEgkTALEQQKAAHEKEVNQLREKWEK 787
Cdd:COG1566     67 VKKGQVLARLDPT----------------DLQAALAQAEAQLAAAEAQLARLEAE--LGAEAEIAAAEAQLAAAQAQLDL 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  788 erswhQQELAKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESAlcQMQLETEKERVSLLETLLQTQKELADA 867
Cdd:COG1566    129 -----AQRELERYQALYKKGAVSQQELDEARAALDAAQAQLEAAQAQLAQA--QAGLREEEELAAAQAQVAQAEAALAQA 201


                   ....*...
gi 2217334293  868 SQQLERLR 875
Cdd:COG1566    202 ELNLARTT 209
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1499-2048 8.77e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 8.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1499 IKELEGQRETQRVALTHL-----TLDLEERSQELQAQSSQIHDLESHSTVLARELQERDQEVKSQREQIEELQRQkeHLT 1573
Cdd:COG4913    257 IRELAERYAAARERLAELeylraALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQ--IRG 334

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1574 QDLERRDQeLMLQKERIQVLEDQRTRQTKILEEDLEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLI 1653
Cdd:COG4913    335 NGGDRLEQ-LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAA 413

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1654 LRDKEKEVECQQEHIHELQELKDQLEQQLQGLhRKVGETSLLLSQREQEIV--VLQQQLQEAREQGELkEQSLQSQ---- 1727
Cdd:COG4913    414 LRDLRRELRELEAEIASLERRKSNIPARLLAL-RDALAEALGLDEAELPFVgeLIEVRPEEERWRGAI-ERVLGGFaltl 491

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1728 ------LDEAQRALAQRDQELEALQQEQQQAQGQEERVKEKADALQGALE------------------------------ 1771
Cdd:COG4913    492 lvppehYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDfkphpfrawleaelgrrfdyvcvdspeelr 571

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1772 --------QAHMTLKERHGELQDHKEQARR-------------LEEELAVEGRRVQALEEVLGDLRAESREQEKALLALQ 1830
Cdd:COG4913    572 rhpraitrAGQVKGNGTRHEKDDRRRIRSRyvlgfdnraklaaLEAELAELEEELAEAEERLEALEAELDALQERREALQ 651

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1831 QQCaeqaqehevETRALQDSWLQAQAVLKERDQELEALRAESQssrhqeeaaraRAEALQEALGKAHAALQGKEQHLLEQ 1910
Cdd:COG4913    652 RLA---------EYSWDEIDVASAEREIAELEAELERLDASSD-----------DLAALEEQLEELEAELEELEEELDEL 711

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1911 AELSRSLEASTATLQASLDACQAhsrQLEEALRIQEGEIQDQ-DLRYQEDVQQLQQALAQRDeeLRHQQEREQLLEKSLA 1989
Cdd:COG4913    712 KGEIGRLEKELEQAEEELDELQD---RLEAAEDLARLELRALlEERFAAALGDAVERELREN--LEERIDALRARLNRAE 786

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217334293 1990 QRVQENMIQ-------EKQNLGQE-REEEEIRGLHQSVRELQltLAQKEQEILELRETQQRNNLEAL 2048
Cdd:COG4913    787 EELERAMRAfnrewpaETADLDADlESLPEYLALLDRLEEDG--LPEYEERFKELLNENSIEFVADL 851
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 1180-1733 8.85e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 41.64  E-value: 8.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1180 QTRDVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQR 1259
Cdd:pfam15921  328 QLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRD 407

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1260 MEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASaaGILEEDLrtarSALKLKNEEVEsereRAQALQEQGELKVAQG 1339
Cdd:pfam15921  408 TGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQ--GQMERQM----AAIQGKNESLE----KVSSLTAQLESTKEML 477

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1340 KALQENLALLTQTLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKCRSVLEHLPMAV 1419
Cdd:pfam15921  478 RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQM 557

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1420 QEREQKLTVQREQIRELEKDRETQRNVLEHQLLELEKKDQMIESQRGQVQDLkkqlvtleclaleleenhhkmecqqKLI 1499
Cdd:pfam15921  558 AEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEF-------------------------KIL 612

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1500 KELEGQRetqrvalthlTLDLEERSQELQAQSSQIHDLESHSTVLAREL-QERDQ---EVKSQREQIEELQRQKEHLTQD 1575
Cdd:pfam15921  613 KDKKDAK----------IRELEARVSDLELEKVKLVNAGSERLRAVKDIkQERDQllnEVKTSRNELNSLSEDYEVLKRN 682

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1576 LERRDQELMLQKERIQVledqrtrQTKILEEDLEQIKLSLRE-RGRELTTQRQLMQERAEegkgpSKAQRGSLEHMKLIL 1654
Cdd:pfam15921  683 FRNKSEEMETTTNKLKM-------QLKSAQSELEQTRNTLKSmEGSDGHAMKVAMGMQKQ-----ITAKRGQIDALQSKI 750

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293 1655 RDKEKEVECQQEHIHELQELKDQLEQQLQGL----HRKVGETSLLLSQR---EQEIVVLQQQLQEAREQGELKEQSLQSQ 1727
Cdd:pfam15921  751 QFLEEAMTNANKEKHFLKEEKNKLSQELSTVatekNKMAGELEVLRSQErrlKEKVANMEVALDKASLQFAECQDIIQRQ 830


                   ....*.
gi 2217334293 1728 LDEAQR 1733
Cdd:pfam15921  831 EQESVR 836
Macoilin pfam09726
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ...
 735-958 9.50e-03

Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.


Pssm-ID: 462859 [Multi-domain]  Cd Length: 670  Bit Score: 41.38  E-value: 9.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  735 KLELDTERSQAEQerdAAARQLAQAEQEGKTALEQQKAAHEKEVNQLRekweKERSWHQQELAKALESLEREKM---ELE 811
Cdd:pfam09726  399 RLEQDIKKLKAEL---QASRQTEQELRSQISSLTSLERSLKSELGQLR----QENDLLQTKLHNAVSAKQKDKQtvqQLE 471

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  812 MRLKEQQTEMEAIQAQREEER---TQAESALCQMQLETEKERVSLLETLLQTQKELadaSQQLERLRQDMkvqKLKEQET 888
Cdd:pfam09726  472 KRLKAEQEARASAEKQLAEEKkrkKEEEATAARAVALAAASRGECTESLKQRKREL---ESEIKKLTHDI---KLKEEQI 545

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217334293  889 tgilqTQLQEAQRELKEAARQHRDD------LAALQEESSSLLQD-------KMDLQKQVEDLKSQLVAQDDSQRLVEQE 955
Cdd:pfam09726  546 -----RELEIKVQELRKYKESEKDTevlmsaLSAMQDKNQHLENSlsaetriKLDLFSALGDAKRQLEIAQGQIYQKDQE 620


                   ...
gi 2217334293  956 VQE 958
Cdd:pfam09726  621 IKD 623
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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