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Conserved domains on  [gi|2217309805|ref|XP_047291249|]
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oxysterol-binding protein-related protein 7 isoform X2 [Homo sapiens]

Protein Classification

OSBP family protein( domain architecture ID 10193026)

OSBP family protein similar to human oxysterol-binding protein (OSBP)-related protein ORP3/6/7

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Oxysterol_BP pfam01237
Oxysterol-binding protein;
460-811 0e+00

Oxysterol-binding protein;


:

Pssm-ID: 460126  Cd Length: 366  Bit Score: 544.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 460 SLWNILRNNIGKDLSKVSMPVQLNEPLNTLQRLCEELEYSSLLDQASRIADPCERMVYIAAFAVSAYSSTYhRAGCKPFN 539
Cdd:pfam01237   1 SLWSILKKNIGKDLSKITMPVFFNEPLSLLQRLAEDLEYSELLDKAAEEDDPLERMLYVAAFAVSGYSSTR-RRVKKPFN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 540 PVLGETYECERPDRGFRFISEQVSHHPPISACHAESENFAFWQDMKWKNKFWGKSLEIVPVGTVNVSLPRFGDHFEWNKV 619
Cdd:pfam01237  80 PLLGETFELVRPDKGFRFIAEQVSHHPPISAFHAESKGWTFWGEIAPKSKFWGKSLEVNPEGTVHLTLKKTGEHYTWTKP 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 620 TSCIHNVLSGQRWIEHYGEVLIRN--TQDsscHCKITFCKAKYWSS-NVHEVQGAVLSRSGRVLHRLFGKWHEGLYRGPT 696
Cdd:pfam01237 160 TTYVHNIIFGKLWVEHYGEMTITNhtTGY---KAVLEFKPKGYFSSgRSNEVTGKVYDKNGKVLYTLSGKWNESLYIKDV 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 697 PGG-----------------QCIWKPNSMPPDHernFGFTQFALELNELTAELKRsLPSTDTRLRPDQRYLEEGNIQAAE 759
Cdd:pfam01237 237 STGkksseddsveeqpdgesRLLWKAGPLPNAY---YGFTSFAVTLNELTDELGK-LPPTDSRLRPDQRALENGDIDEAE 312
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2217309805 760 AQKRRIEQLQRDRRKVMEENNIVHQARFFRRQTDS--SGKEWWVTNNTYWRLRA 811
Cdd:pfam01237 313 EEKLRLEEKQRARRKEREEKGEEWKPRWFKKVKDDpvTGEEYWKYKGGYWERRE 366
PH_ORP3_ORP6_ORP7 cd13287
Human Oxysterol binding protein related proteins 3, 6, and 7 Pleckstrin homology (PH) domain; ...
27-131 5.58e-55

Human Oxysterol binding protein related proteins 3, 6, and 7 Pleckstrin homology (PH) domain; Human ORP3 is proposed to function in regulating the cell-matrix and cell-cell adhesion. A proposed specific function for Human ORP6 was not found at present. Human ORP7is proposed to function in negatively regulating the Golgi soluble NSF attachment protein receptor (SNARE) of 28kDa (GS28) protein stability via sequestration of Golgi-associated ATPase enhancer of 16 kDa (GATE-16). ORP3 has 2 isoforms: the longer ORP3(1) and the shorter ORP3(2). ORP3(1), ORP6, and ORP7 all contain a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. The shorter ORP3(2) is missing the C-terminal portion of its OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


:

Pssm-ID: 270104  Cd Length: 123  Bit Score: 185.22  E-value: 5.58e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805  27 SELWEVVEEPRvRLGTEGVMPERQEGHLLKKRKWPLKGWHK------------------ITKGKLHGSIDVRLSVMSINK 88
Cdd:cd13287     2 SDDWEIMEGLK-GGQTSVQEPGKQEGYLLKKRKWPLKGWHKrffvlekgilkyakspldIAKGKLHGSIDVGLSVMSIKK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2217309805  89 KAQRIDLDTEDNIYHLKIKSQDLFQSWVAQLRAHRLAHRLDMP 131
Cdd:cd13287    81 KARRIDLDTEEFIYHLKVKSQDLFDSWVAKLRAHRLYRQNEIA 123
 
Name Accession Description Interval E-value
Oxysterol_BP pfam01237
Oxysterol-binding protein;
460-811 0e+00

Oxysterol-binding protein;


Pssm-ID: 460126  Cd Length: 366  Bit Score: 544.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 460 SLWNILRNNIGKDLSKVSMPVQLNEPLNTLQRLCEELEYSSLLDQASRIADPCERMVYIAAFAVSAYSSTYhRAGCKPFN 539
Cdd:pfam01237   1 SLWSILKKNIGKDLSKITMPVFFNEPLSLLQRLAEDLEYSELLDKAAEEDDPLERMLYVAAFAVSGYSSTR-RRVKKPFN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 540 PVLGETYECERPDRGFRFISEQVSHHPPISACHAESENFAFWQDMKWKNKFWGKSLEIVPVGTVNVSLPRFGDHFEWNKV 619
Cdd:pfam01237  80 PLLGETFELVRPDKGFRFIAEQVSHHPPISAFHAESKGWTFWGEIAPKSKFWGKSLEVNPEGTVHLTLKKTGEHYTWTKP 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 620 TSCIHNVLSGQRWIEHYGEVLIRN--TQDsscHCKITFCKAKYWSS-NVHEVQGAVLSRSGRVLHRLFGKWHEGLYRGPT 696
Cdd:pfam01237 160 TTYVHNIIFGKLWVEHYGEMTITNhtTGY---KAVLEFKPKGYFSSgRSNEVTGKVYDKNGKVLYTLSGKWNESLYIKDV 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 697 PGG-----------------QCIWKPNSMPPDHernFGFTQFALELNELTAELKRsLPSTDTRLRPDQRYLEEGNIQAAE 759
Cdd:pfam01237 237 STGkksseddsveeqpdgesRLLWKAGPLPNAY---YGFTSFAVTLNELTDELGK-LPPTDSRLRPDQRALENGDIDEAE 312
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2217309805 760 AQKRRIEQLQRDRRKVMEENNIVHQARFFRRQTDS--SGKEWWVTNNTYWRLRA 811
Cdd:pfam01237 313 EEKLRLEEKQRARRKEREEKGEEWKPRWFKKVKDDpvTGEEYWKYKGGYWERRE 366
PH_ORP3_ORP6_ORP7 cd13287
Human Oxysterol binding protein related proteins 3, 6, and 7 Pleckstrin homology (PH) domain; ...
27-131 5.58e-55

Human Oxysterol binding protein related proteins 3, 6, and 7 Pleckstrin homology (PH) domain; Human ORP3 is proposed to function in regulating the cell-matrix and cell-cell adhesion. A proposed specific function for Human ORP6 was not found at present. Human ORP7is proposed to function in negatively regulating the Golgi soluble NSF attachment protein receptor (SNARE) of 28kDa (GS28) protein stability via sequestration of Golgi-associated ATPase enhancer of 16 kDa (GATE-16). ORP3 has 2 isoforms: the longer ORP3(1) and the shorter ORP3(2). ORP3(1), ORP6, and ORP7 all contain a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. The shorter ORP3(2) is missing the C-terminal portion of its OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270104  Cd Length: 123  Bit Score: 185.22  E-value: 5.58e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805  27 SELWEVVEEPRvRLGTEGVMPERQEGHLLKKRKWPLKGWHK------------------ITKGKLHGSIDVRLSVMSINK 88
Cdd:cd13287     2 SDDWEIMEGLK-GGQTSVQEPGKQEGYLLKKRKWPLKGWHKrffvlekgilkyakspldIAKGKLHGSIDVGLSVMSIKK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2217309805  89 KAQRIDLDTEDNIYHLKIKSQDLFQSWVAQLRAHRLAHRLDMP 131
Cdd:cd13287    81 KARRIDLDTEEFIYHLKVKSQDLFDSWVAKLRAHRLYRQNEIA 123
PH_8 pfam15409
Pleckstrin homology domain; This Pleckstrin homology domain is found in some fungal species.
52-116 7.17e-06

Pleckstrin homology domain; This Pleckstrin homology domain is found in some fungal species.


Pssm-ID: 405984  Cd Length: 89  Bit Score: 45.05  E-value: 7.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805  52 GHLLKKRKWPLKGW-----------------HKITKGKLHGSIDVRLSVMSINKKAQRIDLDTEDNIYHLKIKSQDLFQS 114
Cdd:pfam15409   1 GILLKKRRKKLQGYakrffvlnfksgtlsyyRDDNSSALRGKIPLSLAAISANAKTREIIIDSGMEVWHLKALNEKDFQA 80

                  ..
gi 2217309805 115 WV 116
Cdd:pfam15409  81 WV 82
 
Name Accession Description Interval E-value
Oxysterol_BP pfam01237
Oxysterol-binding protein;
460-811 0e+00

Oxysterol-binding protein;


Pssm-ID: 460126  Cd Length: 366  Bit Score: 544.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 460 SLWNILRNNIGKDLSKVSMPVQLNEPLNTLQRLCEELEYSSLLDQASRIADPCERMVYIAAFAVSAYSSTYhRAGCKPFN 539
Cdd:pfam01237   1 SLWSILKKNIGKDLSKITMPVFFNEPLSLLQRLAEDLEYSELLDKAAEEDDPLERMLYVAAFAVSGYSSTR-RRVKKPFN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 540 PVLGETYECERPDRGFRFISEQVSHHPPISACHAESENFAFWQDMKWKNKFWGKSLEIVPVGTVNVSLPRFGDHFEWNKV 619
Cdd:pfam01237  80 PLLGETFELVRPDKGFRFIAEQVSHHPPISAFHAESKGWTFWGEIAPKSKFWGKSLEVNPEGTVHLTLKKTGEHYTWTKP 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 620 TSCIHNVLSGQRWIEHYGEVLIRN--TQDsscHCKITFCKAKYWSS-NVHEVQGAVLSRSGRVLHRLFGKWHEGLYRGPT 696
Cdd:pfam01237 160 TTYVHNIIFGKLWVEHYGEMTITNhtTGY---KAVLEFKPKGYFSSgRSNEVTGKVYDKNGKVLYTLSGKWNESLYIKDV 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805 697 PGG-----------------QCIWKPNSMPPDHernFGFTQFALELNELTAELKRsLPSTDTRLRPDQRYLEEGNIQAAE 759
Cdd:pfam01237 237 STGkksseddsveeqpdgesRLLWKAGPLPNAY---YGFTSFAVTLNELTDELGK-LPPTDSRLRPDQRALENGDIDEAE 312
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2217309805 760 AQKRRIEQLQRDRRKVMEENNIVHQARFFRRQTDS--SGKEWWVTNNTYWRLRA 811
Cdd:pfam01237 313 EEKLRLEEKQRARRKEREEKGEEWKPRWFKKVKDDpvTGEEYWKYKGGYWERRE 366
PH_ORP3_ORP6_ORP7 cd13287
Human Oxysterol binding protein related proteins 3, 6, and 7 Pleckstrin homology (PH) domain; ...
27-131 5.58e-55

Human Oxysterol binding protein related proteins 3, 6, and 7 Pleckstrin homology (PH) domain; Human ORP3 is proposed to function in regulating the cell-matrix and cell-cell adhesion. A proposed specific function for Human ORP6 was not found at present. Human ORP7is proposed to function in negatively regulating the Golgi soluble NSF attachment protein receptor (SNARE) of 28kDa (GS28) protein stability via sequestration of Golgi-associated ATPase enhancer of 16 kDa (GATE-16). ORP3 has 2 isoforms: the longer ORP3(1) and the shorter ORP3(2). ORP3(1), ORP6, and ORP7 all contain a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. The shorter ORP3(2) is missing the C-terminal portion of its OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270104  Cd Length: 123  Bit Score: 185.22  E-value: 5.58e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805  27 SELWEVVEEPRvRLGTEGVMPERQEGHLLKKRKWPLKGWHK------------------ITKGKLHGSIDVRLSVMSINK 88
Cdd:cd13287     2 SDDWEIMEGLK-GGQTSVQEPGKQEGYLLKKRKWPLKGWHKrffvlekgilkyakspldIAKGKLHGSIDVGLSVMSIKK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2217309805  89 KAQRIDLDTEDNIYHLKIKSQDLFQSWVAQLRAHRLAHRLDMP 131
Cdd:cd13287    81 KARRIDLDTEEFIYHLKVKSQDLFDSWVAKLRAHRLYRQNEIA 123
PH_Osh3p_yeast cd13289
Yeast oxysterol binding protein homolog 3 Pleckstrin homology (PH) domain; Yeast Osh3p is ...
50-120 8.07e-07

Yeast oxysterol binding protein homolog 3 Pleckstrin homology (PH) domain; Yeast Osh3p is proposed to function in sterol transport and regulation of nuclear fusion during mating and of pseudohyphal growth as well as sphingolipid metabolism. Osh3 contains a N-GOLD (Golgi dynamics) domain, a PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. GOLD domains are thought to mediate protein-protein interactions, but their role in ORPs are unknown. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 241443  Cd Length: 90  Bit Score: 47.64  E-value: 8.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805  50 QEGHLLKKRKWPLKGWHK----IT------------KGKLHGSIDVRLSVMSINKKAQRIDLDTEDNIYHLKIKSQDLFQ 113
Cdd:cd13289     2 LEGWLLKKRRKKMQGFARryfvLNfkygtlsyyfnpNSPVRGQIPLRLASISASPRRRTIHIDSGSEVWHLKALNDEDFQ 81

                  ....*..
gi 2217309805 114 SWVAQLR 120
Cdd:cd13289    82 AWMKALR 88
PH_8 pfam15409
Pleckstrin homology domain; This Pleckstrin homology domain is found in some fungal species.
52-116 7.17e-06

Pleckstrin homology domain; This Pleckstrin homology domain is found in some fungal species.


Pssm-ID: 405984  Cd Length: 89  Bit Score: 45.05  E-value: 7.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217309805  52 GHLLKKRKWPLKGW-----------------HKITKGKLHGSIDVRLSVMSINKKAQRIDLDTEDNIYHLKIKSQDLFQS 114
Cdd:pfam15409   1 GILLKKRRKKLQGYakrffvlnfksgtlsyyRDDNSSALRGKIPLSLAAISANAKTREIIIDSGMEVWHLKALNEKDFQA 80

                  ..
gi 2217309805 115 WV 116
Cdd:pfam15409  81 WV 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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