|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1722-1891 |
1.42e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 127.82 E-value: 1.42e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1722 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNT 1801
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1802 ILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADY 1881
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
170
....*....|
gi 2217297312 1882 NQALDLEDYA 1891
Cdd:COG0457 168 EKLEAAALAA 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1682-1888 |
2.46e-29 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 118.57 E-value: 2.46e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1682 IDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYF 1760
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDpDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1761 NAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQY 1840
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2217297312 1841 ELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1888
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1648-1891 |
3.09e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 112.41 E-value: 3.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1648 LHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKI-STTAEFLT 1726
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELdPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1727 NRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKY 1806
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1807 EEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALD 1886
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
....*
gi 2217297312 1887 LEDYA 1891
Cdd:COG0457 241 YQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1639-1885 |
6.79e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 112.13 E-value: 6.79e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1639 QAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKI 1718
Cdd:COG2956 26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1719 STT-AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRA 1797
Cdd:COG2956 106 DPDdAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1798 ITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFrAKVRGKIGLIEEA 1877
Cdd:COG2956 186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAA 264
|
....*...
gi 2217297312 1878 MADYNQAL 1885
Cdd:COG2956 265 LALLERQL 272
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
924-1816 |
7.75e-26 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 116.34 E-value: 7.75e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 924 GAIYRKLGKLQSAMNDLQRVILL--EPLFLNAYWHRhlIYLFQDKINEALDDL-NYIHKYNKNNTEAYLSKAEIYRGKKD 1000
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLgyPKNQVLPLLAR--AYLLQGKFQQVLDELpGKTLLDDEGAAELLALRGLAYLGLGQ 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1001 ITLAILNYTQAIKSTPTDADI----------YFRRGEMYEITNKVLAIDdfskcifydPKRTDALLKRGLFYCENENWFA 1070
Cdd:TIGR02917 141 LELAQKSYEQALAIDPRSLYAklglaqlalaENRFDEARALIDEVLTAD---------PGNVDALLLKGDLLLSLGNIEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1071 AIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCL-FRKSNPFRALQdySVSALIN 1149
Cdd:TIGR02917 212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYEDARE--TLQDALK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1150 DGYENLGCFLHRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLC 1229
Cdd:TIGR02917 290 SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASI-QLRLGRVDEAIATLSPALGLDPDDPAALSL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1230 RAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEMDkglSELSPMQQALIYSFCENH 1309
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD---PELGRADLLLILSYLRSG 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1310 --DKAIEVLDgiSWnRAEMTMCA----LLAKVQMKAKRTKEAVEVLKKALdaISHSDkgpDATAISadclyNLGLCYMEE 1383
Cdd:TIGR02917 446 qfDKALAAAK--KL-EKKQPDNAslhnLLGAIYLGKGDLAKAREAFEKAL--SIEPD---FFPAAA-----NLARIDIQE 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1384 GNLQMAFDSFTKAVKANPDFAESFyqRGLCKVKL---HKDSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGLKGR 1460
Cdd:TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAI--LALAGLYLrtgNEEEAVAWLEKAAELNPQEIE--------PALALAQYYLGKGQ 582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1461 YSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVL 1540
Cdd:TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1541 LLDATETVKLntfLNRGLIYVELGQYGFALEDFKQ-------AALISRTNGSLchatamcHHRINEFEEAVNFFTWALKI 1613
Cdd:TIGR02917 663 ELKPDNTEAQ---IGLAQLLLAAKRTESAKKIAKSlqkqhpkAALGFELEGDL-------YLRQKDYPAAIQAYRKALKR 732
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1614 NPcfLDAYVGRGNSYmeYGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNylaye 1693
Cdd:TIGR02917 733 AP--SSQNAIKLHRA--LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN----- 803
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1694 graVVCLqmgNNFAAMQDINAAMKISTTAEfltnrgvihefmghKQNAMKDYQDAI--TLnpkyslayfnaGNIYFHHRQ 1771
Cdd:TIGR02917 804 ---AVVL---NNLAWLYLELKDPRALEYAE--------------RALKLAPNIPAIldTL-----------GWLLVEKGE 852
|
890 900 910 920
....*....|....*....|....*....|....*....|....*
gi 2217297312 1772 FSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANV 1816
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1370-1536 |
4.37e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.16 E-value: 4.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQemhtgglgAY 1448
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAE--------AL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1449 LSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRE 1528
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
....*...
gi 2217297312 1529 LQMALTDY 1536
Cdd:COG0457 160 YEEALELL 167
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1551-1715 |
8.35e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.39 E-value: 8.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1551 NTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYME 1630
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1631 YGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQ 1710
Cdd:COG0457 89 LGRYE---EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
|
....*
gi 2217297312 1711 DINAA 1715
Cdd:COG0457 166 LLEKL 170
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1472-1715 |
3.00e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 100.85 E-value: 3.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1472 IKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETVKLN 1551
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1552 tflNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEY 1631
Cdd:COG0457 81 ---NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1632 G-HDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQ 1710
Cdd:COG0457 158 GrYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
....*
gi 2217297312 1711 DINAA 1715
Cdd:COG0457 238 LALYQ 242
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1483-1889 |
9.37e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 106.32 E-value: 9.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1483 LYRGVLKYYNK-TYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDAtETVKLNTFLNRglIYV 1561
Cdd:TIGR02917 25 LIEAAKSYLQKnKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLAR--AYL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1562 ELGQYGFALEDFKQAALISRTNGSLCHAT-AMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQA 1640
Cdd:TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALrGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD---EA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1641 QKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKI-- 1718
Cdd:TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKap 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1719 -STTAEFLtnRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRA 1797
Cdd:TIGR02917 259 nSPLAHYL--KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLA 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1798 ITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEA 1877
Cdd:TIGR02917 337 SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEA 416
|
410
....*....|..
gi 2217297312 1878 MADYNQALDLED 1889
Cdd:TIGR02917 417 IADLETAAQLDP 428
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1591-1854 |
2.04e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 98.54 E-value: 2.04e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1591 AMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGK 1670
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYE---EALADYEQALELDPDDAEALNNLGLALQALGR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1671 FQKAWNHFTIAIDTDPKNYLAYEgravvclqmgnnfaamqdinaamkisttaefltNRGVIHEFMGHKQNAMKDYQDAIT 1750
Cdd:COG0457 92 YEEALEDYDKALELDPDDAEALY---------------------------------NLGLALLELGRYDEAIEAYERALE 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1751 LNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNR 1830
Cdd:COG0457 139 LDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
|
250 260
....*....|....*....|....
gi 2217297312 1831 AHFYYCLKQYELAEEDLNKALSLK 1854
Cdd:COG0457 219 LAELLLLALALLLALRLAALALYQ 242
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1662-1894 |
1.46e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 96.72 E-value: 1.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1662 GYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYegravvcLQMGNNFAAMQDINAAMKI--------STTAEFLTNRGVIHE 1733
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAH-------LALGNLYRRRGEYDRAIRIhqkllerdPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1734 FMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDF 1813
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1814 ANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLEDYASV 1893
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
.
gi 2217297312 1894 I 1894
Cdd:COG2956 248 L 248
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1205-1880 |
1.53e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 102.47 E-value: 1.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1205 NYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQL--YIRRGqYLLMMKYYDLAKFTIY 1282
Cdd:TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVlpLLARA-YLLQGKFQQVLDELPG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1283 QIAEMDKGLSELSPMQ--QALIYSFCENHDKAIEVLDGISWNRAEMTMCalLAKVQMKAKRTKEAVEVLKKALDAishSD 1360
Cdd:TIGR02917 116 KTLLDDEGAAELLALRglAYLGLGQLELAQKSYEQALAIDPRSLYAKLG--LAQLALAENRFDEARALIDEVLTA---DP 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1361 KGPDATAISADCLYNLGlcymeegNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHKD---SSILDFNRAITlnPKHY 1437
Cdd:TIGR02917 191 GNVDALLLKGDLLLSLG-------NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFeeaEKHADALLKKA--PNSP 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1438 QEMHTGGLGAYLsrvafyglKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAfy 1517
Cdd:TIGR02917 262 LAHYLKALVDFQ--------KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA-- 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1518 NRALCYTKIRelqMALTDYGIVLLLDATETVKLNT-FLN-RGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHH 1595
Cdd:TIGR02917 332 RRLLASIQLR---LGRVDEAIATLSPALGLDPDDPaALSlLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1596 RINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALHINPAYIKARisfGYNLQAQGKFQKAW 1675
Cdd:TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLL---GAIYLGKGDLAKAR 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1676 NHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPK 1754
Cdd:TIGR02917 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1755 YSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPEN-EYVLMnRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHF 1833
Cdd:TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSpEAWLM-LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 2217297312 1834 YYCLKQYELAEEDLNKALSLKPNdalvyNFRAkvrgKIGLIEEAMAD 1880
Cdd:TIGR02917 645 YAVMKNYAKAITSLKRALELKPD-----NTEA----QIGLAQLLLAA 682
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1397-1577 |
1.58e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 95.84 E-value: 1.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1397 VKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGLKGRYSKAILNCNKAIKIY 1475
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRyEEAIEDYEKALELDPDDAE--------ALYNLGLAYLRLGRYEEALADYEQALELD 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1476 PESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETVKLNtflN 1555
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---N 149
|
170 180
....*....|....*....|..
gi 2217297312 1556 RGLIYVELGQYGFALEDFKQAA 1577
Cdd:COG0457 150 LGIALEKLGRYEEALELLEKLE 171
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
945-1254 |
4.13e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.57 E-value: 4.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 945 LLEPLFLNAYW-HRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYF 1023
Cdd:COG2956 1 LLLPVAAALGWyFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1024 RRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFY 1102
Cdd:COG2956 81 ELAQDYLKAGLLdRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1103 KEATQDFSAAIHLDPNNwlalyyrgclfrksnpfralqdysVSALINdgyenlgcflhRGIVYAHLKLWLLAICDFETVI 1182
Cdd:COG2956 161 DEAIEALEKALKLDPDC------------------------ARALLL-----------LAELYLEQGDYEEAIAALERAL 205
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217297312 1183 SLERTITLAYVNIGLIHlLHLDNYTEAIWQFSEAIRIDPLCIQsYLCRAETYFKLHKLKKAVNELSRAIHLQ 1254
Cdd:COG2956 206 EQDPDYLPALPRLAELY-EKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1052-1862 |
5.93e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 100.54 E-value: 5.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1052 TDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFR 1131
Cdd:TIGR02917 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1132 KSNPFRALQDYSVSALINDGYENLGCFLHRGIVYAHLKLWLLAICDFETVISLERTitLAYVNIGLIHLLHLDN-YTEAI 1210
Cdd:TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALAENrFDEAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1211 WQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAkftiyqiaemDKG 1290
Cdd:TIGR02917 180 ALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA----------EKH 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1291 LSELSpmqqaliySFCENHDKAIEvldgiswnraemtmcaLLAKVQMKAKRTKEAVEVLKKALDaishsdKGPDataiSA 1370
Cdd:TIGR02917 250 ADALL--------KKAPNSPLAHY----------------LKALVDFQKKNYEDARETLQDALK------SAPE----YL 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1371 DCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQEMHTGGLgAYL 1449
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRvDEAIATLSPALGLDPDDPAALSLLGE-AYL 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1450 SrvafyglKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIREL 1529
Cdd:TIGR02917 375 A-------LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF 447
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1530 QMALTdygIVLLLDATETVKLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTW 1609
Cdd:TIGR02917 448 DKALA---AAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEK 524
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1610 ALKINPCFLDAYVGRGNSYMEYGHDEATKQ------------------------AQKDFLKALHI----------NPAYI 1655
Cdd:TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAwlekaaelnpqeiepalalaqyylGKGQLKKALAIlneaadaapdSPEAW 604
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1656 KArisFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKISTTaEFLTNRGVIHEFM 1735
Cdd:TIGR02917 605 LM---LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLL 680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1736 GHKQ--NAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEyVLMNRAITNTILKKYEEAKEDF 1813
Cdd:TIGR02917 681 AAKRteSAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-NAIKLHRALLASGNTAEAVKTL 759
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 2217297312 1814 ANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYN 1862
Cdd:TIGR02917 760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLN 808
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
979-1142 |
6.09e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 94.30 E-value: 6.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 979 KYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLK 1057
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1058 RGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRG-CLFRKSNPF 1136
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGiALEKLGRYE 161
|
....*.
gi 2217297312 1137 RALQDY 1142
Cdd:COG0457 162 EALELL 167
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
885-1143 |
7.70e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 94.41 E-value: 7.70e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 885 YVESDLPQEVIKYYESEVKILTEEINdktkypafAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQ 964
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALELDPETVE--------AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 965 DKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSK 1043
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYdEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1044 CIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLAL 1123
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249
|
250 260
....*....|....*....|
gi 2217297312 1124 YYRGCLFRKSNPFRALQDYS 1143
Cdd:COG2956 250 ALADLLERKEGLEAALALLE 269
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
917-1105 |
5.85e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 91.22 E-value: 5.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
170 180 190
....*....|....*....|....*....|
gi 2217297312 1076 TALLNIDHQNSQARTYRGIAYVKWKFYKEA 1105
Cdd:COG0457 168 EKLEAAALAALLAAALGEAALALAAAEVLL 197
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1079-1286 |
8.16e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.84 E-value: 8.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1079 LNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRG-CLFRKSNPFRALQDYSVSALINDGYENlgC 1157
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGlAYLRLGRYEEALADYEQALELDPDDAE--A 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1158 FLHRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIHLlHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKL 1237
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL-ELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2217297312 1238 HKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAE 1286
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1647-1894 |
1.12e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.83 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1647 ALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQD-INAAMKISTTAEFL 1725
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEaAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1726 TNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKK 1805
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1806 YEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQAL 1885
Cdd:COG3914 162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLA 241
|
....*....
gi 2217297312 1886 DLEDYASVI 1894
Cdd:COG3914 242 ALARGPSEL 250
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1651-1850 |
2.09e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 89.20 E-value: 2.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1651 NPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKISTTAEFLTNRGV 1730
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1731 IHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAK 1810
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2217297312 1811 EDFANVIESCPFWAAVYFNRaHFYYCLKQYELAEEDLNKA 1850
Cdd:COG4785 162 ADLEKALELDPNDPERALWL-YLAERKLDPEKALALLLED 200
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1722-1857 |
2.10e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 86.40 E-value: 2.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1722 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNT 1801
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217297312 1802 ILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPND 1857
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1058-1316 |
1.51e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.86 E-value: 1.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1058 RGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKSNPF- 1136
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLd 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1137 RALQDYSvsALINDGYENLGCFLHRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIHLlHLDNYTEAIWQFSEA 1216
Cdd:COG2956 94 RAEELLE--KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL-EQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1217 IRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELsp 1296
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-- 248
|
250 260
....*....|....*....|
gi 2217297312 1297 MQQALIYSFCENHDKAIEVL 1316
Cdd:COG2956 249 LALADLLERKEGLEAALALL 268
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
999-1142 |
1.69e-18 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 86.51 E-value: 1.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 999 KDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTA 1077
Cdd:COG4785 53 LAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYdLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDR 132
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217297312 1078 LLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKSNPFRALQDY 1142
Cdd:COG4785 133 ALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALL 197
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1298-1576 |
2.38e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.09 E-value: 2.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1298 QQALIYSFCENHDKAIEVLDGISWNRAEMTMCAL-LAKVQMKAKRTKEAVEVLKKALDAishsdkgpdaTAISADCLYNL 1376
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLaLGNLYRRRGEYDRAIRIHQKLLER----------DPDRAEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1377 GLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFY 1455
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDwEKAIEVLERLLKLGPENAH--------AYCELAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1456 GLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTD 1535
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2217297312 1536 YGIVLLLDATETVKlntfLNRGLIYVELGQYGFALEDFKQA 1576
Cdd:COG2956 235 LRKALELDPSDDLL----LALADLLERKEGLEAALALLERQ 271
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1330-1521 |
2.47e-18 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 85.74 E-value: 2.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1330 ALLAKVQMKAKRTKEAVEVLKKALDAISHSDKGPDATAISADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQ 1409
Cdd:COG4785 33 AVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNN 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1410 RGLCKVKL-HKDSSILDFNRAITLNPKHYQemhtgglgAYLSR-VAFYGLkGRYSKAILNCNKAIKIYPESVRAYLYRGv 1487
Cdd:COG4785 113 RGLAYLLLgDYDAALEDFDRALELDPDYAY--------AYLNRgIALYYL-GRYELAIADLEKALELDPNDPERALWLY- 182
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2217297312 1488 LKYYNKTYKLAITDLTTAISM------DKNSYTAFYNRAL 1521
Cdd:COG4785 183 LAERKLDPEKALALLLEDWATayllqgDTEEARELFKLAL 222
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
899-1586 |
3.65e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 91.30 E-value: 3.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 899 ESEVKILTEEIndKTKYPAF--AYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNY 976
Cdd:TIGR02917 175 FDEARALIDEV--LTADPGNvdALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 977 IHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRG-EMYEITNKVLAIDDFSKCIFYDPKRTDAL 1055
Cdd:TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGaSEYQLGNLEQAYQYLNQILKYAPNSHQAR 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1056 LKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLF----R 1131
Cdd:TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKlsqgD 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1132 KSNPFRALQDYS-----------------------------VSALINDGYENLGCFLHRGIVYAHLKLWLLAICDFETVI 1182
Cdd:TIGR02917 413 PSEAIADLETAAqldpelgradlllilsylrsgqfdkalaaAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1183 SLERTITLAYVNIGLIHlLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYI 1262
Cdd:TIGR02917 493 SIEPDFFPAAANLARID-IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1263 RRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELSPMqQALIYSFCENHDKAIEVL-DGISWNRAEMTMCALLAKVQMKAKR 1341
Cdd:TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM-LGRAQLAAGDLNKAVSSFkKLLALQPDSALALLLLADAYAVMKN 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1342 TKEAVEVLKKALDAISHSDKGpdataisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGlckvKLHKDS 1421
Cdd:TIGR02917 651 YAKAITSLKRALELKPDNTEA----------QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG----DLYLRQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1422 SilDFNRAITLNPKHYQEMHTGGLGAYLSRVafYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITD 1501
Cdd:TIGR02917 717 K--DYPAAIQAYRKALKRAPSSQNAIKLHRA--LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1502 LTTAISMDKNSYTAFYNRALCYTKI---RELQMALTdygiVLLLDATETVKLNTFlnrGLIYVELGQYGFALEDFKQAAL 1578
Cdd:TIGR02917 793 YQTVVKKAPDNAVVLNNLAWLYLELkdpRALEYAER----ALKLAPNIPAILDTL---GWLLVEKGEADRALPLLRKAVN 865
|
....*...
gi 2217297312 1579 ISRTNGSL 1586
Cdd:TIGR02917 866 IAPEAAAI 873
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1575-1863 |
4.26e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.82 E-value: 4.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1575 QAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEAtkQAQKDFLKALHINPAY 1654
Cdd:COG3914 5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGE--AAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1655 IKARIsfgynLQAQGKFQKAWNHFTIAIDTDPKNYLAYegravvclqmgnnfaamqdinaamkisttaeflTNRGVIHEF 1734
Cdd:COG3914 83 LAALL-----LQALGRYEEALALYRRALALNPDNAEAL---------------------------------FNLGNLLLA 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1735 MGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFA 1814
Cdd:COG3914 125 LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYR 204
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2217297312 1815 NVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNF 1863
Cdd:COG3914 205 RALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
946-1126 |
5.35e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.44 E-value: 5.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 946 LEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRR 1025
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1026 GEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKE 1104
Cdd:COG0457 83 GLALQALGRYeEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170 180
....*....|....*....|..
gi 2217297312 1105 ATQDFSAAIHLDPNNWLALYYR 1126
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALG 184
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1012-1253 |
4.59e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 82.75 E-value: 4.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1012 IKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQART 1090
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYeEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1091 YRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKSNPF-RALQDYSVSALINDGYENLgcFLHRGIVYAHLK 1169
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDPDDADA--LYNLGIALEKLG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1170 LWLLAICDFETVISLERtitLAYVNIGLIHLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSR 1249
Cdd:COG0457 159 RYEEALELLEKLEAAAL---AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235
|
....
gi 2217297312 1250 AIHL 1253
Cdd:COG0457 236 AALA 239
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1424-1683 |
1.97e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 80.34 E-value: 1.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1424 LDFNRAITLNPKHYQEMHTGGLGAYLSRVAFYGLKGRYSKAILNCNKAIKIY------PESVRAYLYRGVLKYYNKTYKL 1497
Cdd:COG4785 12 LALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdralalPDLAQLYYERGVAYDSLGDYDL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1498 AITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATetvKLNTFLNRGLIYVELGQYGFALEDFKQaa 1577
Cdd:COG4785 92 AIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD---YAYAYLNRGIALYYLGRYELAIADLEK-- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1578 lisrtngslchatamchhrinefeeavnfftwALKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDflkalhinpayika 1657
Cdd:COG4785 167 --------------------------------ALELDPNDPERALWLYLAERKLDPEKALALLLED-------------- 200
|
250 260
....*....|....*....|....*.
gi 2217297312 1658 risFGYNLQAQGKFQKAWNHFTIAID 1683
Cdd:COG4785 201 ---WATAYLLQGDTEEARELFKLALA 223
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
917-1116 |
3.99e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.54 E-value: 3.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG2956 76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:COG2956 156 EQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYeEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELL 235
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2217297312 1076 TALLNIDHQNSQARTYRGIaYVKWKFYKEATQDFSAAIHLD 1116
Cdd:COG2956 236 RKALELDPSDDLLLALADL-LERKEGLEAALALLERQLRRH 275
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1735-1887 |
6.77e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 78.80 E-value: 6.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1735 MGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALK--------FDPENEYVLMNRAITNTILKKY 1806
Cdd:COG4785 10 LALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAaeridralALPDLAQLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1807 EEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALD 1886
Cdd:COG4785 90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169
|
.
gi 2217297312 1887 L 1887
Cdd:COG4785 170 L 170
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1121-1266 |
1.07e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 78.42 E-value: 1.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1121 LALYYRGCLFRKSNPFRALQDYSVSALINDGYENLgcFLHRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIHL 1200
Cdd:COG4785 41 LADLALALAAAALAAAALAAERIDRALALPDLAQL--YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYL 118
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1201 LhLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPD----GIQLYIRRGQ 1266
Cdd:COG4785 119 L-LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperALWLYLAERK 187
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1374-1717 |
1.49e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.00 E-value: 1.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1374 YNLGLCYMEEGNLQMAFDSFTKAVKANPDFAEsfyqrglckvklhkdssildfnraitlnpkhyqemhtgglgAYLSRVA 1453
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVE-----------------------------------------AHLALGN 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1454 FYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRAlcytkirelqmal 1533
Cdd:COG2956 51 LYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLA------------- 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1534 tdygivllldatetvklntflnrgLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKI 1613
Cdd:COG2956 118 ------------------------EIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1614 NPCFLDAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPkNYLAYE 1693
Cdd:COG2956 174 DPDCARALLLLAELYLEQGD---YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLL 249
|
330 340
....*....|....*....|....
gi 2217297312 1694 GRAVVCLQMGNNFAAMQDINAAMK 1717
Cdd:COG2956 250 ALADLLERKEGLEAALALLERQLR 273
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1758-1888 |
1.88e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.84 E-value: 1.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1758 AYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCL 1837
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2217297312 1838 KQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1888
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1300-1521 |
2.03e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.12 E-value: 2.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1300 ALIYSFCENHDKAIEVLD-GISWNRAEMTMCALLAKVQMKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGL 1378
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEkALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------DPD----DAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1379 CYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKL-HKDSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGL 1457
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELgRYDEAIEAYERALELDPDDAD--------ALYNLGIALEK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217297312 1458 KGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRAL 1521
Cdd:COG0457 157 LGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
917-1089 |
4.52e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.97 E-value: 4.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG0457 42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKVL-AIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:COG0457 122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEeALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
|
170
....*....|....
gi 2217297312 1076 TALLNIDHQNSQAR 1089
Cdd:COG0457 202 ALEQALRKKLAILT 215
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1444-1749 |
6.59e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.08 E-value: 6.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1444 GLGAYLSRVAFYgLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYnralcy 1523
Cdd:COG2956 8 ALGWYFKGLNYL-LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1524 tkirELqmaltdygivllldatetvklntflnrGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEA 1603
Cdd:COG2956 81 ----EL---------------------------AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1604 VNFFTWALKINPCFLDAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAID 1683
Cdd:COG2956 130 IEVLERLLKLGPENAHAYCELAELYLEQGD---YDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE 206
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217297312 1684 TDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKISTTAEFLTNRGVIHEFMGHKQNAMKDYQDAI 1749
Cdd:COG2956 207 QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1728-1887 |
7.30e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.08 E-value: 7.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1728 RGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYE 1807
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1808 EAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDL 1887
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1657-1789 |
7.72e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 73.30 E-value: 7.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1657 ARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFM 1735
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDpDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2217297312 1736 GHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPEN 1789
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1333-1887 |
4.57e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 77.82 E-value: 4.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1333 AKVQMKAKRTKEAVEVLKKALDAishSDKGPDATaisadclYNLGLCYMEEGNLQMAFDSFTKAV-------KANPDFAE 1405
Cdd:TIGR02917 29 AKSYLQKNKYKAAIIQLKNALQK---DPNDAEAR-------FLLGKIYLALGDYAAAEKELRKALslgypknQVLPLLAR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1406 SfyqrglcKVKLHKDSSILDFNRAITLNP-KHYQEMHTGGLGAYLsrvafygLKGRYSKAILNCNKAIKIYPESVRAYLY 1484
Cdd:TIGR02917 99 A-------YLLQGKFQQVLDELPGKTLLDdEGAAELLALRGLAYL-------GLGQLELAQKSYEQALAIDPRSLYAKLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1485 RGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRA--LCYTKIRELqmALTDYGIVLLLDATETvklNTFLNRGLIYVE 1562
Cdd:TIGR02917 165 LAQLALAENRFDEARALIDEVLTADPGNVDALLLKGdlLLSLGNIEL--ALAAYRKAIALRPNNI---AVLLALATILIE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1563 LGQYGFALEDFKqaALISRTNGSL--CHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQA 1640
Cdd:TIGR02917 240 AGEFEEAEKHAD--ALLKKAPNSPlaHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE---QA 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1641 QKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYE--GRAVVCLQMGNNFAAMQDINAAMKi 1718
Cdd:TIGR02917 315 YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSllGEAYLALGDFEKAAEYLAKATELD- 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1719 STTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAI 1798
Cdd:TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1799 TNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPND-------ALVYNFRAKVRGKI 1871
Cdd:TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNlrailalAGLYLRTGNEEEAV 553
|
570
....*....|....*.
gi 2217297312 1872 GLIEEAMADYNQALDL 1887
Cdd:TIGR02917 554 AWLEKAAELNPQEIEP 569
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1182-1376 |
4.93e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.89 E-value: 4.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1182 ISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLY 1261
Cdd:COG0457 1 LELDPDDAEAYNNLGLA-YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1262 IRRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELSpMQQALIYSFCENHDKAIEVLD-GISWNRAEMTMCALLAKVQMKAK 1340
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEAL-YNLGLALLELGRYDEAIEAYErALELDPDDADALYNLGIALEKLG 158
|
170 180 190
....*....|....*....|....*....|....*.
gi 2217297312 1341 RTKEAVEVLKKALDAISHSDKGPDATAISADCLYNL 1376
Cdd:COG0457 159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1741-1865 |
6.22e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.42 E-value: 6.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1741 AMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESC 1820
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2217297312 1821 PFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRA 1865
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
917-1050 |
1.11e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.84 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2217297312 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMY-EITNKVLAIDDFSKCIFYDPK 1050
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYrALGRPDEAIAALEKALELDPD 138
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1490-1888 |
6.57e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 73.86 E-value: 6.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1490 YYNKTYKLAITDLTTAISMDKNSytAFY-NRALCYTKIRELQMALTDYGIVLLLDATETVKLNtflNRGLIYVELGQYGF 1568
Cdd:TIGR00990 138 YRNKDFNKAIKLYSKAIECKPDP--VYYsNRAACHNALGDWEKVVEDTTAALELDPDYSKALN---RRANAYDGLGKYAD 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1569 ALEDFKQAALISRTNGSlcHATAMCHHRINEFeeAVNFFTWALKINP------CFLDAYVGRGNSYMEYGHDEATKQAQK 1642
Cdd:TIGR00990 213 ALLDLTASCIIDGFRNE--QSAQAVERLLKKF--AESKAKEILETKPenlpsvTFVGNYLQSFRPKPRPAGLEDSNELDE 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1643 DFLKALhiNPAYIKARISfgynlQAQGKFQKAWNHFTIAID-TDPKNYLAYEgravvclqmgnnfaamqdinaamkistt 1721
Cdd:TIGR00990 289 ETGNGQ--LQLGLKSPES-----KADESYEEAARAFEKALDlGKLGEKEAIA---------------------------- 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1722 aefLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNT 1801
Cdd:TIGR00990 334 ---LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1802 ILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADY 1881
Cdd:TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490
|
....*..
gi 2217297312 1882 NQALDLE 1888
Cdd:TIGR00990 491 DTAIELE 497
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1046-1143 |
7.02e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 69.94 E-value: 7.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1046 FYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYY 1125
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146
|
90
....*....|....*....
gi 2217297312 1126 RG-CLFRKSNPFRALQDYS 1143
Cdd:COG4785 147 RGiALYYLGRYELAIADLE 165
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1589-1719 |
1.21e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.14 E-value: 1.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1589 ATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQ 1668
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLD---EAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2217297312 1669 GKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS 1719
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1259-1485 |
1.24e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.10 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1259 QLYIRRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELSPMQQALIYSFCE--NHDKAIEVLDGISWNRAEMTMCALLAKVQ 1336
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAalLALAAGEAAAAAAALLLLAALLELAALLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1337 MKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVK 1416
Cdd:COG3914 89 QALGRYEEALALYRRALAL------NPD----NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1417 LHK-DSSILDFNRAITLNPKHyqemhtggLGAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYR 1485
Cdd:COG3914 159 LGRlEEAIAALRRALELDPDN--------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1803-1891 |
2.13e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.91 E-value: 2.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1803 LKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYN 1882
Cdd:COG5010 67 LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
....*....
gi 2217297312 1883 QALDLEDYA 1891
Cdd:COG5010 147 RALGTSPLK 155
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1556-1692 |
3.37e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.56 E-value: 3.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1556 RGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYG-HD 1634
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGrLE 163
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217297312 1635 EATKQAQkdflKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAY 1692
Cdd:COG3914 164 EAIAALR----RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
933-1160 |
5.87e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.79 E-value: 5.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 933 LQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNY---------IHKYNKNNTEAYLSKAEIYRGKKDITL 1003
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLalaageaaaAAAALLLLAALLELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1004 AILNYTQAIKSTPTDADIYFRRGEMYEITNKVL-AIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNID 1082
Cdd:COG3914 97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEeALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1083 HQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPN------NWLALYYRGCLFRKSNPFRAlqdysVSALINDGYENLG 1156
Cdd:COG3914 177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDnadahsNLLFALRQACDWEVYDRFEE-----LLAALARGPSELS 251
|
....
gi 2217297312 1157 CFLH 1160
Cdd:COG3914 252 PFAL 255
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
903-1096 |
8.33e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.41 E-value: 8.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 903 KILTEEINDKTKYPAFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNK 982
Cdd:COG3914 64 AGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNP 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 983 NNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRgLF 1061
Cdd:COG3914 144 DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRRALELDPDNADAHSNL-LF 222
|
170 180 190
....*....|....*....|....*....|....*
gi 2217297312 1062 YCENENWFAAIEDFTALLNIDHQNSQARTYRGIAY 1096
Cdd:COG3914 223 ALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1102-1333 |
9.55e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.02 E-value: 9.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1102 YKEATQDFSAAIHLDPNNWLALYYRG-CLFRKSNPFRALQDYSVSALINDGYENLGCFLHRGIVYAHLKLWLLAICDFET 1180
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGlALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1181 VI-SLERTITL------AYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHL 1253
Cdd:COG3914 97 ALaLYRRALALnpdnaeALFNLGNL-LLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1254 QPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELSPMQQALIYSFC--ENHDKAIEVLDGISWNRAEMTMCAL 1331
Cdd:COG3914 176 DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACdwEVYDRFEELLAALARGPSELSPFAL 255
|
..
gi 2217297312 1332 LA 1333
Cdd:COG3914 256 LY 257
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1731-1821 |
2.52e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.72 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1731 IHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDyFSKALKFDPENEYVLMNRAITNTILKKYEEAK 1810
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 2217297312 1811 EDFANVIESCP 1821
Cdd:COG3063 80 AYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1549-1688 |
3.64e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.90 E-value: 3.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1549 KLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSY 1628
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1629 MEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKN 1688
Cdd:COG4783 83 LKAGD---YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1745-1855 |
9.15e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.29 E-value: 9.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1745 YQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWA 1824
Cdd:COG5010 43 AAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP 122
|
90 100 110
....*....|....*....|....*....|.
gi 2217297312 1825 AVYFNRAHFYYCLKQYELAEEDLNKALSLKP 1855
Cdd:COG5010 123 NAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
917-1060 |
1.28e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 63.40 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDlnyihkynknnteaylskaeiyr 996
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED----------------------- 129
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217297312 997 gkkditlailnYTQAIKSTPTDADIYFRRGEMYEITNK-VLAIDDFSKCIFYDPKRTDALLKRGL 1060
Cdd:COG4785 130 -----------FDRALELDPDYAYAYLNRGIALYYLGRyELAIADLEKALELDPNDPERALWLYL 183
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1730-1821 |
1.31e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.51 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1730 VIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEA 1809
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
90
....*....|..
gi 2217297312 1810 KEDFANVIESCP 1821
Cdd:COG5010 142 KAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1004-1119 |
1.54e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 1.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1004 AILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNID 1082
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYdEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 2217297312 1083 HQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNN 1119
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1639-1798 |
1.58e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1639 QAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNylayegravvclqmgnnfaamqdinaamki 1718
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN------------------------------ 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1719 sttAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPEN-EYVLMNRA 1797
Cdd:COG4235 51 ---ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADaPARLLEAS 127
|
.
gi 2217297312 1798 I 1798
Cdd:COG4235 128 I 128
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1569-1688 |
2.86e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 2.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1569 ALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKAL 1648
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERAL 78
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2217297312 1649 HINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKN 1688
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1722-1821 |
3.00e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 3.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1722 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNT 1801
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|
gi 2217297312 1802 ILKKYEEAKEDFANVIESCP 1821
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLP 116
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
986-1119 |
4.85e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 4.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 986 EAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCE 1064
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLdEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2217297312 1065 NENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNN 1119
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1528-1674 |
5.10e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.63 E-value: 5.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1528 ELQMALTDYGIVLLLDATETVKLNtflNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFF 1607
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALF---NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217297312 1608 TWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKA 1674
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLE---EAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1803-1891 |
5.49e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 5.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1803 LKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEdLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYN 1882
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
....*....
gi 2217297312 1883 QALDLEDYA 1891
Cdd:COG3063 84 RALELDPSA 92
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
1619-1789 |
8.61e-10 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 61.20 E-value: 8.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1619 DAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYegravv 1698
Cdd:TIGR02521 32 KIRVQLALGYLEQGD---LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVL------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1699 clqmgNNFAAmqdinaamkisttaeFLTNRGVIHEFMGHKQNAMKDyqdaitlnPKY---SLAYFNAGNIYFHHRQFSQA 1775
Cdd:TIGR02521 103 -----NNYGT---------------FLCQQGKYEQAMQQFEQAIED--------PLYpqpARSLENAGLCALKAGDFDKA 154
|
170
....*....|....
gi 2217297312 1776 SDYFSKALKFDPEN 1789
Cdd:TIGR02521 155 EKYLTRALQIDPQR 168
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1332-1478 |
9.62e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 9.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1332 LAKVQMKAKRTKEAVEVLKKALDAishSDKGPDAtaisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRG 1411
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALEL---DPDNPEA-------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217297312 1412 LCKVKLHK-DSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGLKGRYSKAILNCNKAIKIYPES 1478
Cdd:COG4783 80 LALLKAGDyDEALALLEKALKLDPEHPE--------AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
917-1124 |
1.13e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.47 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG3914 44 ALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:COG3914 124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLeEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2217297312 1076 TALLNIDHQNSQARTYRGIAYVK---WKFYkEATQDFSAAIHLDPNNWLALY 1124
Cdd:COG3914 204 RRALELDPDNADAHSNLLFALRQacdWEVY-DRFEELLAALARGPSELSPFA 254
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
969-1092 |
1.34e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.09 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 969 EALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFY 1047
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTeEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2217297312 1048 DPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYR 1092
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1370-1546 |
1.82e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 1.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLhkdssildfnraitlnpkhyqemhtgglgayl 1449
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-------------------------------- 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1450 srvafyglkGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIREL 1529
Cdd:COG4783 52 ---------GDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
170
....*....|....*..
gi 2217297312 1530 QMALTDYGIVLLLDATE 1546
Cdd:COG4783 123 DEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1161-1288 |
2.41e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 2.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1161 RGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKL 1240
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2217297312 1241 KKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEMD 1288
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1756-1894 |
2.64e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.13 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1756 SLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYY 1835
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217297312 1836 CLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLEDYASVI 1894
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1459-1614 |
5.84e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.16 E-value: 5.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1459 GRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGI 1538
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217297312 1539 VLLLDATEtvkLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKIN 1614
Cdd:COG3914 172 ALELDPDN---AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1614-1784 |
6.68e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.39 E-value: 6.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1614 NPCFLDAYVGRGNSYMEYG-HDEAtkqaQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAY 1692
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGdYDLA----IADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1693 EGRAVVCLQMGNNFAAMQDINAAMKISTTAEFLtnrgVIHEFMGHKQnamKDYQDAI-TLNPKYSLAYFNAGNiyfhhrq 1771
Cdd:COG4785 145 LNRGIALYYLGRYELAIADLEKALELDPNDPER----ALWLYLAERK---LDPEKALaLLLEDWATAYLLQGD------- 210
|
170
....*....|...
gi 2217297312 1772 FSQASDYFSKALK 1784
Cdd:COG4785 211 TEEARELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1379-1480 |
8.75e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 8.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1379 CYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHKDSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGLK 1458
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAE--------ALLNLAELLLEL 72
|
90 100
....*....|....*....|..
gi 2217297312 1459 GRYSKAILNCNKAIKIYPESVR 1480
Cdd:COG3063 73 GDYDEALAYLERALELDPSALR 94
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
917-1018 |
1.00e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 1.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG4783 38 PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117
|
90 100
....*....|....*....|..
gi 2217297312 997 GKKDITLAILNYTQAIKSTPTD 1018
Cdd:COG4783 118 ALGRPDEAIAALEKALELDPDD 139
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1016-1253 |
1.06e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 60.38 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1016 PTDADIYFRRGEMYEITNKVL-AIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGI 1094
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLeALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1095 AYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKSNPFRalqdySVSALINDGYENlgcFLHRGIVYAHLKLWLL- 1173
Cdd:TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA-----SSMATFRRCKKN---FPEAPDVYNYYGELLLd 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1174 ------AICDFETVISLERTITLAYVNI------GLIHLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLK 1241
Cdd:TIGR00990 480 qnkfdeAIEKFDTAIELEKETKPMYMNVlplinkALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559
|
250
....*....|..
gi 2217297312 1242 KAVNELSRAIHL 1253
Cdd:TIGR00990 560 EALKLFERAAEL 571
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1593-1689 |
1.33e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1593 CHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYG-HDEAtkqaqKDFLKALHINPAYIKARISFGYNLQAQGKF 1671
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGrYDEA-----IALEKALKLDPNNAEALLNLAELLLELGDY 75
|
90
....*....|....*...
gi 2217297312 1672 QKAWNHFTIAIDTDPKNY 1689
Cdd:COG3063 76 DEALAYLERALELDPSAL 93
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1562-1885 |
1.56e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 59.61 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1562 ELGQYGFALEDFKQA------ALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYmeyghDE 1635
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAiklyskAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY-----DG 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1636 ATKQAQKDF-LKALHINPAYIKARIS--FGYNLQAQgkfqkAWNHFTIAIDTDPKNY--LAYEGRAVVCLQMGNNFAAMQ 1710
Cdd:TIGR00990 207 LGKYADALLdLTASCIIDGFRNEQSAqaVERLLKKF-----AESKAKEILETKPENLpsVTFVGNYLQSFRPKPRPAGLE 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1711 DINAAMKisTTAEFLTNRGVIHefMGHK-----QNAMKDYQDAITLN---PKYSLAYFNAGNIYFHHRQFSQASDYFSKA 1782
Cdd:TIGR00990 282 DSNELDE--ETGNGQLQLGLKS--PESKadesyEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKS 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1783 LKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYN 1862
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437
|
330 340
....*....|....*....|...
gi 2217297312 1863 FRAKVRGKIGLIEEAMADYNQAL 1885
Cdd:TIGR00990 438 QLGVTQYKEGSIASSMATFRRCK 460
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1636-1787 |
1.60e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1636 ATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAA 1715
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217297312 1716 MKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDP 1787
Cdd:COG5010 81 LQLDpNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1037-1142 |
2.59e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.24 E-value: 2.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1037 AIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLD 1116
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100
....*....|....*....|....*..
gi 2217297312 1117 PNNWLALYYRG-CLFRKSNPFRALQDY 1142
Cdd:COG4235 82 PDNPEALYLLGlAAFQQGDYAEAIAAW 108
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1018-1142 |
2.65e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1018 DADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAY 1096
Cdd:COG4783 3 CAEALYALAQALLLAGDYdEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2217297312 1097 VKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKS-NPFRALQDY 1142
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALgRPDEAIAAL 129
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1631-1722 |
2.79e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 2.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1631 YGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNhFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQ 1710
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 2217297312 1711 DINAAMKISTTA 1722
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1191-1354 |
3.61e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.08 E-value: 3.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1191 AYVNIGLIHLlHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLM 1270
Cdd:COG4785 75 LYYERGVAYD-SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1271 MKYYDLAkftiyqIAEMDKGLSELSPMQQALIYSFC----ENHDKAIEVLDGIsWnraemtmcallAKVQMKAKRTKEAV 1346
Cdd:COG4785 154 LGRYELA------IADLEKALELDPNDPERALWLYLaerkLDPEKALALLLED-W-----------ATAYLLQGDTEEAR 215
|
....*...
gi 2217297312 1347 EVLKKALD 1354
Cdd:COG4785 216 ELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1344-1489 |
3.95e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.86 E-value: 3.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1344 EAVEVLKKALDAIshsdkgPDataiSADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSS 1422
Cdd:COG4235 1 EAIARLRQALAAN------PN----DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDtEEA 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217297312 1423 ILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLK 1489
Cdd:COG4235 71 EELLERALALDPDNPE--------ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1698-1788 |
5.64e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.09 E-value: 5.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1698 VCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKdYQDAITLNPKYSLAYFNAGNIYFHHRQFSQAS 1776
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2217297312 1777 DYFSKALKFDPE 1788
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1084-1256 |
8.60e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 8.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1084 QNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGclfrksnpfralqdysvsalindgyenlgcflhrgI 1163
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLG-----------------------------------E 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1164 VYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKA 1243
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA-LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125
|
170
....*....|...
gi 2217297312 1244 VNELSRAIHLQPD 1256
Cdd:COG4783 126 IAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1420-1545 |
1.26e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.93 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1420 DSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAI 1499
Cdd:COG3914 95 EEALALYRRALALNPDNAE--------ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2217297312 1500 TDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDAT 1545
Cdd:COG3914 167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1455-1543 |
1.27e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.04 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1455 YGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALT 1534
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
....*....
gi 2217297312 1535 DYGIVLLLD 1543
Cdd:COG5010 144 ALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1021-1120 |
1.41e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.94 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1021 IYFRRGEMYEitnkvlAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEdFTALLNIDHQNSQARTYRGIAYVKWK 1100
Cdd:COG3063 1 LYLKLGDLEE------AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG 73
|
90 100
....*....|....*....|
gi 2217297312 1101 FYKEATQDFSAAIHLDPNNW 1120
Cdd:COG3063 74 DYDEALAYLERALELDPSAL 93
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1610-1719 |
1.43e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.32 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1610 ALKINPCFLDAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNY 1689
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGR---YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|
gi 2217297312 1690 LAYEGRAVVCLQMGNNFAAMQDINAAMKIS 1719
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1610-1753 |
1.45e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.04 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1610 ALKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNY 1689
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217297312 1690 LAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNP 1753
Cdd:COG5010 89 ELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1223-1403 |
2.68e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 2.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1223 CIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAkftiyqIAEMDKGLsELSPMQQALI 1302
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEA------IVLLHEAL-ELDPDEPEAR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1303 YSfcenhdkaievldgiswnraemtmcalLAKVQMKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGLCYME 1382
Cdd:COG4783 76 LN---------------------------LGLALLKAGDYDEALALLEKALKL------DPE----HPEAYLRLARAYRA 118
|
170 180
....*....|....*....|.
gi 2217297312 1383 EGNLQMAFDSFTKAVKANPDF 1403
Cdd:COG4783 119 LGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
917-1028 |
3.94e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLflNAYWHRHL--IYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEI 994
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD--NADALLDLaeALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
|
90 100 110
....*....|....*....|....*....|....
gi 2217297312 995 YRGKKDITLAILNYTQAIKSTPTDADIYFRRGEM 1028
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1559-1653 |
4.96e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 4.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1559 IYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNfFTWALKINPCFLDAYVGRGNSYMEYGHdeaTK 1638
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD---YD 76
|
90
....*....|....*
gi 2217297312 1639 QAQKDFLKALHINPA 1653
Cdd:COG3063 77 EALAYLERALELDPS 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1736-1821 |
5.09e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.99 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1736 GHKQNAMKDYQDAITLNPKYSL---AYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYV---LMNRAITNTILKKYEEA 1809
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKA 86
|
90
....*....|..
gi 2217297312 1810 KEDFANVIESCP 1821
Cdd:COG1729 87 RATLEELIKKYP 98
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1164-1256 |
5.97e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1164 VYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIwQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKA 1243
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLL-LLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 2217297312 1244 VNELSRAIHLQPD 1256
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
917-1025 |
6.03e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.61 E-value: 6.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG4785 107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
|
90 100 110
....*....|....*....|....*....|....*
gi 2217297312 997 gKKDITLAILNYTQAIKST------PTDADIYFRR 1025
Cdd:COG4785 187 -KLDPEKALALLLEDWATAyllqgdTEEARELFKL 220
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1200-1289 |
1.11e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1200 LLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKF 1279
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 2217297312 1280 TIYQIAEMDK 1289
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1205-1490 |
1.28e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 53.45 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1205 NYTEAIWQFSEAI--RIDPLciqSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQ-YLLMMKYYD-LAKFT 1280
Cdd:TIGR00990 142 DFNKAIKLYSKAIecKPDPV---YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANaYDGLGKYADaLLDLT 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1281 IYQIAEmDKGLSELSPMQQALIYSFCENhdKAIEVLDGISWN--------------RAEMTMCAL-------------LA 1333
Cdd:TIGR00990 219 ASCIID-GFRNEQSAQAVERLLKKFAES--KAKEILETKPENlpsvtfvgnylqsfRPKPRPAGLedsneldeetgngQL 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1334 KVQMKAKRTK------EAVEVLKKALDAishSDKGPdATAISadclYNL-GLCYMEEGNLQMAFDSFTKAVKANPDFAES 1406
Cdd:TIGR00990 296 QLGLKSPESKadesyeEAARAFEKALDL---GKLGE-KEAIA----LNLrGTFKCLKGKHLEALADLSKSIELDPRVTQS 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1407 FYQRGLCKVKL-HKDSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYR 1485
Cdd:TIGR00990 368 YIKRASMNLELgDPDKAEEDFDKALKLNSEDPD--------IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439
|
....*
gi 2217297312 1486 GVLKY 1490
Cdd:TIGR00990 440 GVTQY 444
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1455-1544 |
1.34e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.24 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1455 YGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAItDLTTAISMDKNSYTAFYNRALCYTKIRELQMALT 1534
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 2217297312 1535 DYGIVLLLDA 1544
Cdd:COG3063 81 YLERALELDP 90
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
926-1016 |
1.68e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.86 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 926 IYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALdDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAI 1005
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 2217297312 1006 LNYTQAIKSTP 1016
Cdd:COG3063 80 AYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1389-1509 |
2.46e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1389 AFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGLKGRYSKAILN 1467
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRyDEALAAYEKALRLDPDNAD--------ALLDLAEALLAAGDTEEAEEL 73
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2217297312 1468 CNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMD 1509
Cdd:COG4235 74 LERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1021-1117 |
3.30e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.80 E-value: 3.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1021 IYFRRGEMYEitnkvlAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWK 1100
Cdd:COG5010 63 LYNKLGDFEE------SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 2217297312 1101 FYKEATQDFSAAIHLDP 1117
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
868-1117 |
3.40e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.91 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 868 EDPPERVKEPPKLKLNDYVESdLPQEVIKYYESEVKILTEEI--NDKTKYPAFAYCRRGAIYRKLGKLQSAMNDLQRVIL 945
Cdd:TIGR00990 281 EDSNELDEETGNGQLQLGLKS-PESKADESYEEAARAFEKALdlGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 946 LEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKstpTDADIYFRR 1025
Cdd:TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSH 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1026 GEMYEITNKVLAIDD----FSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTalLNIDHQNSQARTYRGI------- 1094
Cdd:TIGR00990 437 IQLGVTQYKEGSIASsmatFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD--TAIELEKETKPMYMNVlplinka 514
|
250 260
....*....|....*....|....*
gi 2217297312 1095 -AYVKWKF-YKEATQDFSAAIHLDP 1117
Cdd:TIGR00990 515 lALFQWKQdFIEAENLCEKALIIDP 539
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1330-1435 |
4.93e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 4.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1330 ALLAKVQMKAKRTKEAVEVLKKALDAishsdKGPDATAisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQ 1409
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRL-----DPDNADA-----LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90
|
90 100
....*....|....*....|....*..
gi 2217297312 1410 RGLCKVKLHK-DSSILDFNRAITLNPK 1435
Cdd:COG4235 91 LGLAAFQQGDyAEAIAAWQKLLALLPA 117
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
1722-1857 |
5.71e-06 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 50.27 E-value: 5.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1722 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYfNAGNIYFHHRQ-FSQASDYFSKALKFDPENEYVLMNRAITn 1800
Cdd:PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAY-NYLGIYLTQAGnFDAAYEAFDSVLELDPTYNYAYLNRGIA- 141
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217297312 1801 tilkkyeeakedfanviescpfwaavyfnrahFYYcLKQYELAEEDLNKALSLKPND 1857
Cdd:PRK11189 142 --------------------------------LYY-GGRYELAQDDLLAFYQDDPND 165
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
889-1016 |
5.96e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 5.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 889 DLPQEVIKYYESEVKILTEEINDKTKYPAFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKIN 968
Cdd:COG5010 26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKD 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2217297312 969 EALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTP 1016
Cdd:COG5010 106 EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1598-1811 |
6.02e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.14 E-value: 6.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1598 NEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPA-----YIKARISFgynlqAQGKFQ 1672
Cdd:TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD---KAEEDFDKALKLNSEdpdiyYHRAQLHF-----IKGEFA 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1673 KAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMK--------ISTTAEFLTNRgviHEFmghkQNAMKD 1744
Cdd:TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKnfpeapdvYNYYGELLLDQ---NKF----DEAIEK 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1745 YQDAITLNPKYS------LAYFNAGNIYFHHRQ-FSQASDYFSKALKFDPENEY-------VLMNRAITNTILKKYEEAK 1810
Cdd:TIGR00990 490 FDTAIELEKETKpmymnvLPLINKALALFQWKQdFIEAENLCEKALIIDPECDIavatmaqLLLQQGDVDEALKLFERAA 569
|
.
gi 2217297312 1811 E 1811
Cdd:TIGR00990 570 E 570
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
940-1049 |
1.40e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 940 LQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDA 1019
Cdd:COG5010 43 AAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP 122
|
90 100 110
....*....|....*....|....*....|.
gi 2217297312 1020 DIYFRRGEMYEITNKV-LAIDDFSKCIFYDP 1049
Cdd:COG5010 123 NAYSNLAALLLSLGQDdEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1824-1888 |
1.70e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.34 E-value: 1.70e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217297312 1824 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1888
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD 68
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1834-1894 |
1.78e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 1.78e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217297312 1834 YYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLEDYASVI 1894
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
1824-1857 |
1.83e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.20 E-value: 1.83e-05
10 20 30
....*....|....*....|....*....|....
gi 2217297312 1824 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPND 1857
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1558-1652 |
1.91e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1558 LIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEat 1637
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD-- 139
|
90
....*....|....*
gi 2217297312 1638 kQAQKDFLKALHINP 1652
Cdd:COG5010 140 -EAKAALQRALGTSP 153
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1824-1857 |
1.92e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.18 E-value: 1.92e-05
10 20 30
....*....|....*....|....*....|....
gi 2217297312 1824 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPND 1857
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
1375-1533 |
1.99e-05 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 48.10 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1375 NLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHKDSSILD-FNRAITLNPKHYQEMHTggLGAYLSRva 1453
Cdd:TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDsFRRALTLNPNNGDVLNN--YGTFLCQ-- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1454 fyglKGRYSKAILNCNKAIK--IYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQM 1531
Cdd:TIGR02521 112 ----QGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187
|
..
gi 2217297312 1532 AL 1533
Cdd:TIGR02521 188 AR 189
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
936-1058 |
2.39e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 936 AMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKST 1015
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2217297312 1016 PTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKR 1058
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYaEAIAAWQKLLALLPADAPARLLE 125
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1204-1296 |
2.48e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 48.63 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1204 DNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKftiyq 1283
Cdd:PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK----- 90
|
90
....*....|...
gi 2217297312 1284 iAEMDKGLSeLSP 1296
Cdd:PLN03088 91 -AALEKGAS-LAP 101
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1048-1150 |
2.51e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.49 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1048 DPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRG 1127
Cdd:COG5010 50 LAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLA 129
|
90 100
....*....|....*....|...
gi 2217297312 1128 CLFRKSNPFRALQDYSVSALIND 1150
Cdd:COG5010 130 ALLLSLGQDDEAKAALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1455-1540 |
2.56e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1455 YGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALT 1534
Cdd:COG4235 27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIA 106
|
....*.
gi 2217297312 1535 DYGIVL 1540
Cdd:COG4235 107 AWQKLL 112
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
1370-1403 |
4.08e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.05 E-value: 4.08e-05
10 20 30
....*....|....*....|....*....|....
gi 2217297312 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDF 1403
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1425-1513 |
4.16e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.01 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1425 DFNRAITLNPKHYQemhtgglgAYLSRVAFYGLKGRYSKAIlNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTT 1504
Cdd:COG3063 14 YYEKALELDPDNAD--------ALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84
|
....*....
gi 2217297312 1505 AISMDKNSY 1513
Cdd:COG3063 85 ALELDPSAL 93
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1772-1858 |
4.30e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 47.86 E-value: 4.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1772 FSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKAL 1851
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97
|
....*..
gi 2217297312 1852 SLKPNDA 1858
Cdd:PLN03088 98 SLAPGDS 104
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1208-1317 |
5.22e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 5.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1208 EAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEM 1287
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|
gi 2217297312 1288 DKGLSElSPMQQALIYSFCENHDKAIEVLD 1317
Cdd:COG4235 81 DPDNPE-ALYLLGLAAFQQGDYAEAIAAWQ 109
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1370-1403 |
5.81e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.64 E-value: 5.81e-05
10 20 30
....*....|....*....|....*....|....
gi 2217297312 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDF 1403
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
1019-1139 |
6.04e-05 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 47.19 E-value: 6.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1019 ADIYFRRGEMYEitnKV----LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGI 1094
Cdd:PRK11189 64 AQLHYERGVLYD---SLglraLARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2217297312 1095 AYVKWKFYKEATQDFSAAIHLDPNnwlalyyrgclfrksNPFRAL 1139
Cdd:PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPN---------------DPYRAL 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1191-1277 |
6.58e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 6.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1191 AYVNIGLIHLlHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLM 1270
Cdd:COG4235 19 GWLLLGRAYL-RLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97
|
....*..
gi 2217297312 1271 MKYYDLA 1277
Cdd:COG4235 98 QGDYAEA 104
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1330-1434 |
7.36e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 7.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1330 ALLAKVQMKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQ 1409
Cdd:COG5010 58 SPSDNLYNKLGDFEESLALLEQALQL------DPN----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127
|
90 100
....*....|....*....|....*.
gi 2217297312 1410 RGLCKVKL-HKDSSILDFNRAITLNP 1434
Cdd:COG5010 128 LAALLLSLgQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1834-1888 |
8.24e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.24 E-value: 8.24e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2217297312 1834 YYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMAdYNQALDLE 1888
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLD 55
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1445-1576 |
8.98e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 8.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1445 LGAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYT 1524
Cdd:COG5010 20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2217297312 1525 KIRELQMALTDYGIVLLLDATETvklNTFLNRGLIYVELGQYGFALEDFKQA 1576
Cdd:COG5010 100 RSGDKDEAKEYYEKALALSPDNP---NAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1337-1436 |
1.04e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.44 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1337 MKAKRTKEAVEVLKKALDAISHSDKGPDAtaisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPD---FAESFYQRGLC 1413
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNSPLAPDA-------LYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLS 76
|
90 100
....*....|....*....|....
gi 2217297312 1414 KVKL-HKDSSILDFNRAITLNPKH 1436
Cdd:COG1729 77 YLELgDYDKARATLEELIKKYPDS 100
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1804-1887 |
1.13e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.44 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1804 KKYEEAKEDFANVIESCP---FWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDalvyNFRAKVRGKIGLIEEAMAD 1880
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDS----PKAPDALLKLGLSYLELGD 82
|
....*..
gi 2217297312 1881 YNQALDL 1887
Cdd:COG1729 83 YDKARAT 89
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
1758-1789 |
1.33e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.89 E-value: 1.33e-04
10 20 30
....*....|....*....|....*....|..
gi 2217297312 1758 AYFNAGNIYFHHRQFSQASDYFSKALKFDPEN 1789
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
936-1082 |
1.44e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 936 AMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKST 1015
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217297312 1016 PTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNID 1082
Cdd:COG5010 85 PNNPELYYNLALLYSRSGDKdEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1200-1288 |
1.52e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1200 LLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVnELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKF 1279
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*....
gi 2217297312 1280 TIYQIAEMD 1288
Cdd:COG3063 81 YLERALELD 89
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1824-1887 |
1.60e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.99 E-value: 1.60e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217297312 1824 AAVYFNRAHFYYCLKQYELAEEDLNKALSL--------KPNDALVYNFRAKVRGKIGLIEEAMADYNQALDL 1887
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1824-1888 |
1.75e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 1.75e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217297312 1824 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1888
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1766-1868 |
1.95e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1766 YFHHRQFSQASDYFSKALKFDPENEY---VLMNRAITNTILKKYEEAKEDFANVIESCP---FWAAVYFNRAHFYYCLKQ 1839
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGD 82
|
90 100
....*....|....*....|....*....
gi 2217297312 1840 YELAEEDLNKALSLKPNDALVYNFRAKVR 1868
Cdd:COG1729 83 YDKARATLEELIKKYPDSEAAKEARARLA 111
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
1722-1789 |
2.76e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 43.51 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1722 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYfHHR---------------QFSQASDYFSKALKFD 1786
Cdd:PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY-HKRgekaeeagdqdeaeaLFDKAAEYWKQAIRLA 150
|
...
gi 2217297312 1787 PEN 1789
Cdd:PRK02603 151 PNN 153
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1758-1789 |
2.99e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 2.99e-04
10 20 30
....*....|....*....|....*....|..
gi 2217297312 1758 AYFNAGNIYFHHRQFSQASDYFSKALKFDPEN 1789
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1754-1881 |
4.40e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 45.36 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1754 KYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYvlmnraitntilkkyeeakedfanviescpfwaavYFNRAHF 1833
Cdd:TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVY-----------------------------------YSNRAAC 169
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2217297312 1834 YYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADY 1881
Cdd:TIGR00990 170 HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1162-1266 |
6.24e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1162 GIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLK 1241
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEA-LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102
|
90 100
....*....|....*....|....*
gi 2217297312 1242 KAVNELSRAIHLQPDGIQLYIRRGQ 1266
Cdd:COG4235 103 EAIAAWQKLLALLPADAPARLLEAS 127
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1463-1576 |
9.43e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 9.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1463 KAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLL 1542
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....
gi 2217297312 1543 DATEtvkLNTFLNRGLIYVELGQYGFALEDFKQA 1576
Cdd:COG4235 81 DPDN---PEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1331-1402 |
1.00e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 1.00e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217297312 1331 LLAKVQMKAKRTKEAVEVLKKALDAISHSDKGPDAtaisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 1402
Cdd:COG1729 35 WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA-------LLKLGLSYLELGDYDKARATLEELIKKYPD 99
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1519-1615 |
1.03e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.48 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1519 RALCYTKIRELQMALTDYGIVLLLDATETVKLNtflNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRIN 1598
Cdd:COG5010 60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYY---NLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 2217297312 1599 EFEEAVNFFTWALKINP 1615
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
994-1082 |
1.19e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 994 IYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKVLAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIE 1073
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*....
gi 2217297312 1074 DFTALLNID 1082
Cdd:COG3063 81 YLERALELD 89
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
917-948 |
1.20e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 1.20e-03
10 20 30
....*....|....*....|....*....|..
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEP 948
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
1824-1856 |
1.25e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.89 E-value: 1.25e-03
10 20 30
....*....|....*....|....*....|...
gi 2217297312 1824 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPN 1856
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
1370-1402 |
1.62e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.50 E-value: 1.62e-03
10 20 30
....*....|....*....|....*....|...
gi 2217297312 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 1402
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1840-1888 |
2.25e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.47 E-value: 2.25e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2217297312 1840 YELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1888
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1550-1613 |
2.69e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 2.69e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217297312 1550 LNTFLNRGLIYVELGQYGFALEDFKQA-ALISRTNGSLCHATA-------MCHHRINEFEEAVNFFTWALKI 1613
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKAlEIARRLLGPDHPLTAttllnlgRLYLELGRYEEALELLERALAL 74
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1160-1353 |
2.70e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 42.66 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1160 HRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHK 1239
Cdd:TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM-NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1240 LKKAVNELSRAIHLQPDGIQLYIRRG--QYLL-----MMKYYDLAKFTIYQIAEMDKGLSEL----SPMQQALiysfcEN 1308
Cdd:TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGvtQYKEgsiasSMATFRRCKKNFPEAPDVYNYYGELlldqNKFDEAI-----EK 489
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2217297312 1309 HDKAIEV---LDGISWNRAEMTMCALLAkVQMKaKRTKEAVEVLKKAL 1353
Cdd:TIGR00990 490 FDTAIELekeTKPMYMNVLPLINKALAL-FQWK-QDFIEAENLCEKAL 535
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1420-1510 |
3.79e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1420 DSSILDFNRAITLNPKHYQemhtgglgAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAI 1499
Cdd:COG5010 71 EESLALLEQALQLDPNNPE--------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|.
gi 2217297312 1500 TDLTTAISMDK 1510
Cdd:COG5010 143 AALQRALGTSP 153
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1722-1755 |
3.82e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 3.82e-03
10 20 30
....*....|....*....|....*....|....
gi 2217297312 1722 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKY 1755
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
917-948 |
4.14e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 4.14e-03
10 20 30
....*....|....*....|....*....|..
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEP 948
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
1758-1788 |
4.88e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 4.88e-03
10 20 30
....*....|....*....|....*....|.
gi 2217297312 1758 AYFNAGNIYFHHRQFSQASDYFSKALKFDPE 1788
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1166-1354 |
5.08e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.67 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1166 AHLKLWLLAICDFETVISLERTITLAYVNIGLIHLLHLDNYTEAIWQFSEAIRID-------PLCIQSYLCRAETYFKLH 1238
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERidralalPDLAQLYYERGVAYDSLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1239 KLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAkftiyqIAEMDKGLsELSPmqqaliysfceNHDKAIevldg 1318
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAA------LEDFDRAL-ELDP-----------DYAYAY----- 144
|
170 180 190
....*....|....*....|....*....|....*.
gi 2217297312 1319 isWNRAemtmCALLAKvqmkaKRTKEAVEVLKKALD 1354
Cdd:COG4785 145 --LNRG----IALYYL-----GRYELAIADLEKALE 169
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1066-1185 |
5.32e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1066 ENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRG-CLFRKSNPFRALQDYSV 1144
Cdd:COG5010 34 ANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLAlLYSRSGDKDEAKEYYEK 113
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2217297312 1145 SALINDGYENLgcFLHRGIVYAHLKLWLLAICDFETVISLE 1185
Cdd:COG5010 114 ALALSPDNPNA--YSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1331-1402 |
6.08e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.37 E-value: 6.08e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217297312 1331 LLAKVQMKAKRTKEAVEVLKKALdAISHSDKGPDATAIsADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 1402
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKAL-EIARRLLGPDHPLT-ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
997-1277 |
6.26e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 41.51 E-value: 6.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 997 GKKDITLAILNYTQAIKSTPtDADIYFRRGEMY-EITNKVLAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:TIGR00990 139 RNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHnALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1076 TAL-LNIDHQNSQA-----RTYRGIAYVKWKFYKEATQDfsaaiHLDPNNWLALYYRgcLFRKSNPFRALQDYS-VSALI 1148
Cdd:TIGR00990 218 TAScIIDGFRNEQSaqaveRLLKKFAESKAKEILETKPE-----NLPSVTFVGNYLQ--SFRPKPRPAGLEDSNeLDEET 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1149 NDGYENLGcflHRGIVYAHLKLWLLAICDFETVIS---LERTITLAYVNIGLIHLLhLDNYTEAIWQFSEAIRIDPLCIQ 1225
Cdd:TIGR00990 291 GNGQLQLG---LKSPESKADESYEEAARAFEKALDlgkLGEKEAIALNLRGTFKCL-KGKHLEALADLSKSIELDPRVTQ 366
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2217297312 1226 SYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLA 1277
Cdd:TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA 418
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
1370-1408 |
6.94e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 40.40 E-value: 6.94e-03
10 20 30
....*....|....*....|....*....|....*....
gi 2217297312 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFY 1408
Cdd:TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
917-975 |
7.63e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 7.63e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217297312 917 AFAYCRRGAIYRKLGKLQSAMnDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLN 975
Cdd:COG3063 26 ADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1458-1540 |
8.10e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 8.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217297312 1458 KGRYSKAILNCNKAIKIYPESV---RAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSY---TAFYNRALCYTKIRELQM 1531
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85
|
....*....
gi 2217297312 1532 ALTDYGIVL 1540
Cdd:COG1729 86 ARATLEELI 94
|
|
| |
