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Conserved domains on  [gi|2217361386|ref|XP_047274708|]
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importin subunit alpha-6 isoform X2 [Homo sapiens]

Protein Classification

armadillo/beta-catenin-like repeat-containing protein( domain architecture ID 1000979)

armadillo/beta-catenin-like repeat-containing protein similar to Saccharomyces cerevisiae vacuolar protein 8 that functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP1 super family cl34886
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
6-309 2.15e-140

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


The actual alignment was detected with superfamily member COG5064:

Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 407.35  E-value: 2.15e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386   6 NRLLTNSNRLTTTRNAVWALSNLCRGKNPPPNFSKVSPCLNVLSRLLFSSDPDVLADVCWALSYLSDGPNDKIQAVIDSG 85
Cdd:COG5064   206 GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386  86 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTVSNITAGNRAQIQAV 165
Cdd:COG5064   286 IPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAV 365

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386 166 IDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGT--PEQIRYLVALGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 243
Cdd:COG5064   366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLnrPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG 445

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217361386 244 EQESKQNGIGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEEDDPSIVPQVDEN 309
Cdd:COG5064   446 EQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN 511
 
Name Accession Description Interval E-value
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
6-309 2.15e-140

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 407.35  E-value: 2.15e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386   6 NRLLTNSNRLTTTRNAVWALSNLCRGKNPPPNFSKVSPCLNVLSRLLFSSDPDVLADVCWALSYLSDGPNDKIQAVIDSG 85
Cdd:COG5064   206 GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386  86 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTVSNITAGNRAQIQAV 165
Cdd:COG5064   286 IPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAV 365

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386 166 IDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGT--PEQIRYLVALGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 243
Cdd:COG5064   366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLnrPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG 445

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217361386 244 EQESKQNGIGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEEDDPSIVPQVDEN 309
Cdd:COG5064   446 EQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN 511
Arm_3 pfam16186
Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic ...
 260-299 3.14e-19

Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic proteins such as importin subunit alpha-2, as the last of the repeating units.


Pssm-ID: 465050 [Multi-domain]  Cd Length: 49  Bit Score: 79.56  E-value: 3.14e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2217361386 260 LIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEEDD 299
Cdd:pfam16186   2 LIEEAGGLDKIEALQNHENEEIYKKAYKIIEKYFSDEEEE 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 116-156 6.96e-08

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 48.19  E-value: 6.96e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 2217361386  116 DDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTVSNITA 156
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 17-240 2.88e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 42.78  E-value: 2.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386   17 TTRNAVWALSNLCRgknPPPNFSKVSP-CLNVLSRLLFSSDPDVL----ADVCWALS-YLSDGPNDKIQAVI-------- 82
Cdd:PLN03200  1143 TARKAIPLLVDLLK---PIPDRPGAPPlALGLLTQLAEGSDVNKLamaeAGALDALTkYLSLGPQDSTEEAAsellrilf 1219

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386   83 --------DSGVC--RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQViLNCSALPCLLHLLSSPKESIRKEACWTVS 152
Cdd:PLN03200  1220 sspelrrhESAFGavNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSE-LARQAVQPLVEMLNTGSESEQHAAIGALI 1298

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386  153 NITAGNRAQIQAVID--ANIFPVLIEILQKAEFRTRKEAAWAI-----TNATSGGTPEqirylvALGCIKPLCDLLTVMD 225
Cdd:PLN03200  1299 KLSSGNPSKALAIADveGNALENLCKILSSDSSLELKEDAAELcrvlfTNTRIRSTPA------AARCIEPLISLLVSES 1372

                          250
                   ....*....|....*
gi 2217361386  226 SKIVQVALNGLENIL 240
Cdd:PLN03200  1373 STAQEAGVCALDRLL 1387
 
Name Accession Description Interval E-value
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
6-309 2.15e-140

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 407.35  E-value: 2.15e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386   6 NRLLTNSNRLTTTRNAVWALSNLCRGKNPPPNFSKVSPCLNVLSRLLFSSDPDVLADVCWALSYLSDGPNDKIQAVIDSG 85
Cdd:COG5064   206 GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386  86 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTVSNITAGNRAQIQAV 165
Cdd:COG5064   286 IPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAV 365

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386 166 IDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGT--PEQIRYLVALGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 243
Cdd:COG5064   366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLnrPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG 445

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217361386 244 EQESKQNGIGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEEDDPSIVPQVDEN 309
Cdd:COG5064   446 EQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN 511
Arm_3 pfam16186
Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic ...
 260-299 3.14e-19

Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic proteins such as importin subunit alpha-2, as the last of the repeating units.


Pssm-ID: 465050 [Multi-domain]  Cd Length: 49  Bit Score: 79.56  E-value: 3.14e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2217361386 260 LIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEEDD 299
Cdd:pfam16186   2 LIEEAGGLDKIEALQNHENEEIYKKAYKIIEKYFSDEEEE 41
HEAT COG1413
HEAT repeat [General function prediction only];
19-193 7.22e-11

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 59.26  E-value: 7.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386  19 RNAVWALSNLcrgknpppnfsKVSPCLNVLSRLLFSSDPDVLADVCWALSYLSDgpndkIQAVidsgvcRRLVELLMHND 98
Cdd:COG1413     3 RAAARALGRL-----------GDPAAVPALIAALADEDPDVRAAAARALGRLGD-----PRAV------PALLEALKDPD 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386  99 YKVVSPALRAVGNIvtGDDiqtqvilncSALPCLLHLLSSPKESIRKEACWTVSNITagnraqiqaviDANIFPVLIEIL 178
Cdd:COG1413    61 PEVRAAAAEALGRI--GDP---------EAVPALIAALKDEDPEVRRAAAEALGRLG-----------DPAAVPALLEAL 118

                         170
                  ....*....|....*
gi 2217361386 179 QKAEFRTRKEAAWAI 193
Cdd:COG1413   119 KDPDWEVRRAAARAL 133
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 119-156 1.15e-09

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 52.84  E-value: 1.15e-09
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2217361386 119 QTQVILNCSALPCLLHLLSSPKESIRKEACWTVSNITA 156
Cdd:pfam00514   4 NKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 116-156 6.96e-08

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 48.19  E-value: 6.96e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 2217361386  116 DDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTVSNITA 156
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 158-198 1.31e-07

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 47.06  E-value: 1.31e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2217361386 158 NRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATS 198
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 74-114 4.33e-07

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 45.91  E-value: 4.33e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2217361386  74 PNDKIQAVIDSGVCRRLVELLMHNDYKVVSPALRAVGNIVT 114
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 74-113 1.71e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 43.96  E-value: 1.71e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 2217361386   74 PNDKIQAVIDSGVCRRLVELLMHNDYKVVSPALRAVGNIV 113
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 201-241 2.09e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 43.98  E-value: 2.09e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2217361386 201 TPEQIRYLVALGCIKPLCDLLTVMDSKIVQVALNGLENILR 241
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 158-198 1.86e-05

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 41.26  E-value: 1.86e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 2217361386  158 NRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATS 198
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 201-239 1.71e-04

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 38.56  E-value: 1.71e-04
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2217361386  201 TPEQIRYLVALGCIKPLCDLLTVMDSKIVQVALNGLENI 239
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
HEAT_EZ pfam13513
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ...
 105-154 2.34e-04

HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.


Pssm-ID: 463906 [Multi-domain]  Cd Length: 55  Bit Score: 38.50  E-value: 2.34e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2217361386 105 ALRAVGNI--VTGDDIQTQVIlncSALPCLLHLLSSPKESIRKEACWTVSNI 154
Cdd:pfam13513   7 AALALGSLaeGGPDLLAPAVP---ELLPALLPLLNDDSDLVREAAAWALGRL 55
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 17-240 2.88e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 42.78  E-value: 2.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386   17 TTRNAVWALSNLCRgknPPPNFSKVSP-CLNVLSRLLFSSDPDVL----ADVCWALS-YLSDGPNDKIQAVI-------- 82
Cdd:PLN03200  1143 TARKAIPLLVDLLK---PIPDRPGAPPlALGLLTQLAEGSDVNKLamaeAGALDALTkYLSLGPQDSTEEAAsellrilf 1219

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386   83 --------DSGVC--RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQViLNCSALPCLLHLLSSPKESIRKEACWTVS 152
Cdd:PLN03200  1220 sspelrrhESAFGavNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSE-LARQAVQPLVEMLNTGSESEQHAAIGALI 1298

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386  153 NITAGNRAQIQAVID--ANIFPVLIEILQKAEFRTRKEAAWAI-----TNATSGGTPEqirylvALGCIKPLCDLLTVMD 225
Cdd:PLN03200  1299 KLSSGNPSKALAIADveGNALENLCKILSSDSSLELKEDAAELcrvlfTNTRIRSTPA------AARCIEPLISLLVSES 1372

                          250
                   ....*....|....*
gi 2217361386  226 SKIVQVALNGLENIL 240
Cdd:PLN03200  1373 STAQEAGVCALDRLL 1387
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 42-72 3.19e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 37.82  E-value: 3.19e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2217361386  42 SPCLNVLSRLLFSSDPDVLADVCWALSYLSD 72
Cdd:pfam00514  11 AGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 24-162 2.00e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 40.09  E-value: 2.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386   24 ALSNLCRGKNpppNFSKVS---PCLNVLSRLLFSSDPDVLADVCWALSYLSDGPNDKIQAVIDSGVCRRLVELLMH-NDY 99
Cdd:PLN03200   170 ALRNLCGSTD---GFWSATleaGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQgNEV 246

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217361386  100 KVVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSP-KESIRKE--------ACWTVSNITAGNRAQI 162
Cdd:PLN03200   247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPsKEFMQGEfaqalqenAMGALANICGGMSALI 318
HEAT COG1413
HEAT repeat [General function prediction only];
101-239 7.56e-03

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 36.15  E-value: 7.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217361386 101 VVSPALRAVGNIvtGDDiqtqvilncSALPCLLHLLSSPKESIRKEACWTVSNITagnraqiqaviDANIFPVLIEILQK 180
Cdd:COG1413     1 VRRAAARALGRL--GDP---------AAVPALIAALADEDPDVRAAAARALGRLG-----------DPRAVPALLEALKD 58

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2217361386 181 AEFRTRKEAAWAITNAtsgGTPEQirylvalgcIKPLCDLLTVMDSKIVQVALNGLENI 239
Cdd:COG1413    59 PDPEVRAAAAEALGRI---GDPEA---------VPALIAALKDEDPEVRRAAAEALGRL 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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