|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
88-638 |
1.88e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 1.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 88 LQRDAE------EQEEELDAVSKNLSVL-LREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVAVANQLTALKETID 160
Cdd:COG1196 205 LERQAEkaeryrELKEELKELEAELLLLkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 161 SLAKDKRLSKLHTASLRRQQELLIEKIemfdhtnhslRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFT 240
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERR----------RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 241 NKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTV- 319
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELe 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 320 --------KQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSdwcLRHSKEATAKGQL 391
Cdd:COG1196 435 eeeeeeeeALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE---AEADYEGFLEGVK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 392 EEEVSALKLQVAELSSQLRSAEDKSRTEREE-LRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIK 470
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 471 KHENLVEKYKKKVQQARLESEECCLKLEATQKE----------AREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAE 540
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGrtlvaarleaALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 541 QQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTL 620
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570
....*....|....*...
gi 2069483775 621 IAKEATIRSVQQQLEEKV 638
Cdd:COG1196 752 ALEELPEPPDLEELEREL 769
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
342-688 |
6.31e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 6.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 342 LTQQAERAEEsARQLAAKLQEKETQLAqalstssdwcLRHSKEATAK-GQLEEEVSALKLQVAELSSQLRSAEDKSRTER 420
Cdd:COG1196 205 LERQAEKAER-YRELKEELKELEAELL----------LLKLRELEAElEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 421 EELrdqfqhvsaenastkldnQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEEcclkLEAT 500
Cdd:COG1196 274 LEL------------------EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE----LEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 501 QKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEM 580
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 581 FQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVcecnVLSRKLQHTLDDAQRQVD 660
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL----EEAALLEAALAELLEELA 487
|
330 340
....*....|....*....|....*...
gi 2069483775 661 DSMQRVLAKERASQSKALDLQSQLSRAK 688
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALL 515
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
176-551 |
1.44e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 176 LRRQQEL--LIEKIEMFDHTNHSLRELLREwSEHERESLvwSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHL 253
Cdd:TIGR02168 673 LERRREIeeLEEKIEELEEKIAELEKALAE-LRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 254 DFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQ-QQRKEEDQEHD 332
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeAANLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 333 QQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEataKGQLEEEVSALKLQVAELSSQLRSA 412
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE---RASLEEALALLRSELEELSEELREL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 413 EDKsrteREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRglqSEARRLKSTIKKHENLVEKYKKKVQQaRLESee 492
Cdd:TIGR02168 907 ESK----RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS---EEYSLTLEEAEALENKIEDDEEEARR-RLKR-- 976
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2069483775 493 cclkLEATQKEAREVTVSLEREKDQVKrellDRLRGLETLPDKLRRAEQQLRDVQEEAD 551
Cdd:TIGR02168 977 ----LENKIKELGPVNLAAIEEYEELK----ERYDFLTAQKEDLTEAKETLEEAIEEID 1027
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
336-694 |
4.57e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 4.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 336 REALALLTQQAERAEESARQLAAKLQEKETQLAQalstssdwclrhskeatakgqLEEEVSALKLQVAELSSQLRSAedk 415
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEE---------------------LEEELEQLRKELEELSRQISAL--- 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 416 sRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLEseeccl 495
Cdd:TIGR02168 732 -RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA------ 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 496 kLEATQKEAREvtvslerekdqVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADvhkrrnvEHSATLSEVRHKVEQQG 575
Cdd:TIGR02168 805 -LDELRAELTL-----------LNEEAANLRERLESLERRIAATERRLEDLEEQIE-------ELSEDIESLAAEIEELE 865
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 576 SQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTLDDA 655
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
330 340 350
....*....|....*....|....*....|....*....
gi 2069483775 656 QRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQL 694
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
199-636 |
3.61e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 3.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 199 ELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLE 278
Cdd:PRK02224 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 279 SQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDReaLALLTQQAERAEESARQLAA 358
Cdd:PRK02224 356 ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF--LEELREERDELREREAELEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 359 KLQEKETQLA---------------QALSTSSDWCLRHSKEAtAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTER--E 421
Cdd:PRK02224 434 TLRTARERVEeaealleagkcpecgQPVEGSPHVETIEEDRE-RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDriE 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 422 ELRDQfqhvsAENASTKLDNQRLTVQltSSEEKLRGLQSEArrlkstiKKHENLVEKYKKKVQQARLESEECclkleatq 501
Cdd:PRK02224 513 RLEER-----REDLEELIAERRETIE--EKRERAEELRERA-------AELEAEAEEKREAAAEAEEEAEEA-------- 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 502 keaREVTVSLEREKDQVKRElLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEmf 581
Cdd:PRK02224 571 ---REEVAELNSKLAELKER-IESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD-- 644
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2069483775 582 QQRNTLLQEENNVHKEKMYNLERKLEdfkvENKEMSDTLIAKEATIRSVQQQLEE 636
Cdd:PRK02224 645 EARIEEAREDKERAEEYLEQVEEKLD----ELREERDDLQAEIGAVENELEELEE 695
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
174-728 |
3.72e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 174 ASLRRQQELLIEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLlakftNKEKEafklakHL 253
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL-----EQQKQ------IL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 254 DFEKENVKTTEELskiLESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQqqRKEEDQEHDQ 333
Cdd:TIGR02168 308 RERLANLERQLEE---LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES--RLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 334 QDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDwcLRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAE 413
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 414 DKSRTEREELRDQFQHVSAENASTKLDNQRLTVqLTSSEEKLRGLQSEARRL---KSTIKKHENLV-------EKYKKKV 483
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKALlknQSGLSGILGVLselisvdEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 484 --------QQARLESEECCLKLEATQKEAR-------EVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDV-- 546
Cdd:TIGR02168 540 eaalggrlQAVVVENLNAAKKAIAFLKQNElgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAls 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 547 -----------QEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNvhkeKMYNLERKLEDFKVENKE 615
Cdd:TIGR02168 620 yllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRR----EIEELEEKIEELEEKIAE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 616 MSDTLIAKEATIRSVQQQLEEKVCECNVLSRKL-------------QHTLDDAQRQVDDSMQRVLAKERASQSKALDLQS 682
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQIsalrkdlarleaeVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 2069483775 683 QLSRAKSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATNRSLQN 728
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
390-657 |
3.88e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 390 QLEEEVSALKLQVAELS-SQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKST 468
Cdd:TIGR02168 224 ELELALLVLRLEELREElEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 469 IKKHEnlveKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQE 548
Cdd:TIGR02168 304 KQILR----ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 549 EADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMsdTLIAKEATIR 628
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE--ELEELQEELE 457
|
250 260
....*....|....*....|....*....
gi 2069483775 629 SVQQQLEEKVCECNVLSRKLQHTLDDAQR 657
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQ 486
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
93-718 |
4.97e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 4.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 93 EEQEEELDAVSKNLSVLLREQESNRRSKKADagaegrKVDVLLRALVEAEIDGVAVANQLTALKETIDSLAKDK------ 166
Cdd:pfam15921 244 EDQLEALKSESQNKIELLLQQHQDRIEQLIS------EHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmymr 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 167 RLSKLHTASLRRQQELLIEKIEMFDHTNHSLRELL---REWSEHERESLVWSEQKDALKIRLadseaenTRLLAKFTNKE 243
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVlanSELTEARTERDQFSQESGNLDDQL-------QKLLADLHKRE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 244 KEafklakhLDFEKENVKTTEELSKILESTRDHLesqlsRAETEKRhlNAQIQRMQQSydqqykeLQALQKELQtvKQQQ 323
Cdd:pfam15921 391 KE-------LSLEKEQNKRLWDRDTGNSITIDHL-----RRELDDR--NMEVQRLEAL-------LKAMKSECQ--GQME 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 324 RKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDwclrhskeatAKGQLEEEVSALKLQVA 403
Cdd:pfam15921 448 RQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSD----------LTASLQEKERAIEATNA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 404 ELsSQLRSAEDKSRTEREELRDQFQHVsaENASTKLDNQRLtvQLTSSEEKLRGLQSEARRLKSTIKKHEN-----LVEK 478
Cdd:pfam15921 518 EI-TKLRSRVDLKLQELQHLKNEGDHL--RNVQTECEALKL--QMAEKDKVIEILRQQIENMTQLVGQHGRtagamQVEK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 479 --YKKKVQQARLESEEccLKLEATQKEAR----EVTVS-LEREKDQVKRELLDRLRGL-------ETLPDKLRRAEQQLR 544
Cdd:pfam15921 593 aqLEKEINDRRLELQE--FKILKDKKDAKirelEARVSdLELEKVKLVNAGSERLRAVkdikqerDQLLNEVKTSRNELN 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 545 DVQEEADVHKR--RNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEE-NNVHKEKMynlerkledfkveNKEMSDTLI 621
Cdd:pfam15921 671 SLSEDYEVLKRnfRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgSDGHAMKV-------------AMGMQKQIT 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 622 AKEATIRSVQ---QQLEEKVCECNvlsrKLQHTLDDAQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSK 698
Cdd:pfam15921 738 AKRGQIDALQskiQFLEEAMTNAN----KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAL 813
|
650 660
....*....|....*....|
gi 2069483775 699 QEMERRFqSQLQNLKDRLEQ 718
Cdd:pfam15921 814 DKASLQF-AECQDIIQRQEQ 832
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
236-563 |
1.73e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 236 LAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDH-LESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQK 314
Cdd:TIGR02169 186 IERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 315 ELQTVKQQQRKEEDQEHDQQDREALALLTQ---------QAERA----EESARQLAAKLQEKETQLAQALSTSSDWCLRH 381
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLGEEEQLRVKEKigeleaeiaSLERSiaekERELEDAEERLAKLEAEIDKLLAEIEELEREI 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 382 SKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRDqfqhvsaenASTKLDnqRLTVQLTSSEEKLRGLQSE 461
Cdd:TIGR02169 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD---------YREKLE--KLKREINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 462 ARRLKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEARevtvSLEREKDQVKRELLDRLRGLETLPDKLRRAEQ 541
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE----QLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330 340
....*....|....*....|..
gi 2069483775 542 QLRDVQEEADVHKRRNVEHSAT 563
Cdd:TIGR02169 491 ELAEAEAQARASEERVRGGRAV 512
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
74-551 |
3.17e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 3.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 74 QRSRVQHQSEGGTGLQRDAEEQEEELDAVSKNLSVLLREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVAVANQLT 153
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 154 ALKETIDSLAKDKRLSKLHTASLRRQQELLIEKIEmfdhtnhslrELLREWSEHERESLVWSEQKDALKIRLADSEAENT 233
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEE----------ALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 234 RLLAKFTNKEKEAFKLakhldfEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQ 313
Cdd:COG1196 446 EAAEEEAELEEEEEAL------LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 314 KELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEE 393
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 394 EVSALKLQVAELSSQLRSAEDksrTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARR--LKSTIKK 471
Cdd:COG1196 600 AVDLVASDLREADARYYVLGD---TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRreLLAALLE 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 472 HENLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEAD 551
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
88-702 |
4.56e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 88 LQRDAEEQEEELDAVSKNLsvllREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVAVANQLTALKETIDSLAKDKR 167
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKA----EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 168 LSKLHTASLRRQQELLIEKIEmfdhtNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAF 247
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAA-----KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 248 KlAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEE 327
Cdd:PTZ00121 1471 K-ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 328 DQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQalstssdwclrhsKEATAKGQLEEEVSALKLQVAELSS 407
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE-------------ARIEEVMKLYEEEKKMKAEEAKKAE 1616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 408 QLRSAEDKSRTEREELRDQFQHVSAENASTKldnqrltvqltsSEEKLRGLQSEARRLKSTIKKHEnlvEKYKKKVQQAR 487
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKK------------KAEELKKAEEENKIKAAEEAKKA---EEDKKKAEEAK 1681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 488 LESEECCLKLEATQKEAREvtvslEREKDQVKRELLDRLRGLEtlpdKLRRAEQQLRDVQEEAdvhkRRNVEHSATLSEV 567
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEE-----AKKAEELKKKEAEEKKKAE----ELKKAEEENKIKAEEA----KKEAEEDKKKAEE 1748
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 568 RHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTliakeATIRSVQQQLEEKVCECNVLSRK 647
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI-----KDIFDNFANIIEGGKEGNLVIND 1823
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 2069483775 648 LQHTLDDAQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEME 702
Cdd:PTZ00121 1824 SKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKE 1878
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
88-725 |
5.21e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 5.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 88 LQRDAE------EQEEELDAVSKNLSVL-LREQESNRRSKKADAGAEGRKVDVLLRALVEAEidgvavanqlTALKETID 160
Cdd:TIGR02168 205 LERQAEkaerykELKAELRELELALLVLrLEELREELEELQEELKEAEEELEELTAELQELE----------EKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 161 SLAKDKRLSKLHTASLRRQQELLIEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFT 240
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 241 NKEKEAfklakhldfeKENVKTTEELSKILESTRDHLESQ---LSRAETEKRHLNAQIQRMQqsydqqyKELQALQKELQ 317
Cdd:TIGR02168 355 SLEAEL----------EELEAELEELESRLEELEEQLETLrskVAQLELQIASLNNEIERLE-------ARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 318 TVKQQQRKEEDQEHDQQDRE-----------------ALALLTQQAERAEESARQLAAKLQEKETQLAQA---LSTSSDW 377
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKElqaeleeleeeleelqeELERLEEALEELREELEEAEQALDAAERELAQLqarLDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 378 CLRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDN---------------- 441
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAiaflkqnelgrvtflp 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 442 ------QRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLV-----------------EKYKKKVQQARL---------- 488
Cdd:TIGR02168 578 ldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALsyllggvlvvddldnalELAKKLRPGYRIvtldgdlvrp 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 489 ------ESEECCLKLEATQKEAREvtvsLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSA 562
Cdd:TIGR02168 658 ggvitgGSAKTNSSILERRREIEE----LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 563 TLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKL---EDFKVENKEMSDTLIAKEATIRSVQQQLEEKVC 639
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELaeaEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 640 ECNVLSRKLQHTLDDAQRQVDDSMQRVlakERASQSKAlDLQSQLSRAKSEMSQLQRSKQEMERRFQSqLQNLKDRLEQS 719
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRL---EDLEEQIE-ELSEDIESLAAEIEELEELIEELESELEA-LLNERASLEEA 888
|
....*.
gi 2069483775 720 DATNRS 725
Cdd:TIGR02168 889 LALLRS 894
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
91-730 |
6.03e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 6.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 91 DAEEQEEELDAVSKNLSVLLREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVAVANQLTALKET------------ 158
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAArkaeeerkaeea 1217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 159 --------IDSLAKDKRLSKLHTASLRRQQELLIEKIEMFDHTN--HSLRELLREWSEHERESlvwSEQKDALKIRLADS 228
Cdd:PTZ00121 1218 rkaedakkAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARmaHFARRQAAIKAEEARKA---DELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 229 --EAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRM---QQSYD 303
Cdd:PTZ00121 1295 akKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeaaEKKKE 1374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 304 QQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSK 383
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 384 EA----TAKGQLEEEVSALKLQvaelssqlRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGlq 459
Cdd:PTZ00121 1455 EAkkaeEAKKKAEEAKKADEAK--------KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA-- 1524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 460 SEARRLKSTIKKHENLVEKYKKKVQQAR----LESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDK 535
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKkaeeLKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 536 LRRAEQQLRDVQEEadvhkRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEdfkvENKE 615
Cdd:PTZ00121 1605 KKMKAEEAKKAEEA-----KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE----EDKK 1675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 616 MSDTLIAKEATIRSVQQQLEEKVCEcnvlSRKLQHTLDDAQRQVDDSMQrVLAKERASQSKALDLQSQLSRAKSEMSQLQ 695
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEE----AKKAEELKKKEAEEKKKAEE-LKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
650 660 670
....*....|....*....|....*....|....*
gi 2069483775 696 RSKQEmerrfQSQLQNLKDRLEQSDATNRSLQNYV 730
Cdd:PTZ00121 1751 KDEEE-----KKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
451-713 |
6.66e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 6.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 451 SEEKLRGLQSEARRLKSTIKKHENLVEKYKK-KVQQARLESEECCLKLEATQKEAREVT---VSLEREKDQVKRELLDRL 526
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEALERQKEAIErqlASLEEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 527 RGLETLPDKLRRAEQQLRDVQEEADVH-KRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERK 605
Cdd:TIGR02169 265 KRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 606 LEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKL---QHTLDDAQRQVDDS---MQRVLAKERASQSKALD 679
Cdd:TIGR02169 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELkdyREKLEKLKREINELkreLDRLQEELQRLSEELAD 424
|
250 260 270
....*....|....*....|....*....|....
gi 2069483775 680 LQSQLSRAKSEMSQLQRSKQEMERRFQSQLQNLK 713
Cdd:TIGR02169 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
477-721 |
8.67e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 8.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 477 EKYKK-KVQQARLESEECCLKLEATQKEAREvtvsLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKR 555
Cdd:COG1196 213 ERYRElKEELKELEAELLLLKLRELEAELEE----LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 556 RNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLE 635
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 636 EkvcecnvlsrkLQHTLDDAQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEMERRFQSQLQNLKDR 715
Cdd:COG1196 369 E-----------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
....*.
gi 2069483775 716 LEQSDA 721
Cdd:COG1196 438 EEEEEA 443
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
274-472 |
9.02e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 9.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 274 RDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQkelqtvKQQQRKEEDQEHDQQDREaLALLTQQAERAEESA 353
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQ------RLAEYSWDEIDVASAERE-IAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 354 RQLAAkLQEKETQLAQALSTSSDwclRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTE-REELRDQFQHVSA 432
Cdd:COG4913 685 DDLAA-LEEQLEELEAELEELEE---ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElRALLEERFAAALG 760
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2069483775 433 ENASTKLDnQRLTVQLTSSEEKLRGLQSEARRLKSTIKKH 472
Cdd:COG4913 761 DAVERELR-ENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
476-728 |
1.27e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 476 VEKYKKKVQQARL---ESEECCLKLEATQKEAREVTVSLEREKDQVKR--ELLDRLRGLE--TLPDKLRRAEQQLRDVQE 548
Cdd:TIGR02168 167 ISKYKERRKETERkleRTRENLDRLEDILNELERQLKSLERQAEKAERykELKAELRELElaLLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 549 EADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIR 628
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 629 SVQQQLEEKVCECNVLSRKLQHTLDDAQRQvDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSkqemERRFQSQ 708
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESL-EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNNE 401
|
250 260
....*....|....*....|
gi 2069483775 709 LQNLKDRLEQSDATNRSLQN 728
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQ 421
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
307-478 |
1.53e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 307 KELQALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDwcLRHSKEAT 386
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD--LAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 387 AkgQLEEEVSALKLQVAELSSQLRSAEDK---SRTEREELRDQFQHVSA---ENASTKLDNQRLTVQLTSSEEKLR-GLQ 459
Cdd:COG4913 695 E--ELEAELEELEEELDELKGEIGRLEKEleqAEEELDELQDRLEAAEDlarLELRALLEERFAAALGDAVERELReNLE 772
|
170
....*....|....*....
gi 2069483775 460 SEARRLKSTIKKHENLVEK 478
Cdd:COG4913 773 ERIDALRARLNRAEEELER 791
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
390-717 |
1.54e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 390 QLEEEVSALKLQVAELSSQLRSAEdKSRTEREELRDqfqhvsaenastkLDNQRLTVQLTSSEEKLRGLQSEARRLKSTI 469
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQAEKAE-RYKELKAELRE-------------LELALLVLRLEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 470 KKHENLVEKYKKKVQQARLESEEcclkleatqkearevtvsLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEE 549
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSE------------------LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 550 ADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRS 629
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 630 VQQQLEEKVCECNVLSRKLQHtLDDAQRQVDDSMQRVLAKERASQSKALD-----LQSQLSRAKSEMSQLQRSKQEMERR 704
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRER-LQQEIEELLKKLEEAELKELQAELEELEeeleeLQEELERLEEALEELREELEEAEQA 476
|
330
....*....|....*.
gi 2069483775 705 FQS---QLQNLKDRLE 717
Cdd:TIGR02168 477 LDAaerELAQLQARLD 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
453-727 |
2.05e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 453 EKLRGLQSEARRLKST-----IKKHENLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKrELLDRLR 527
Cdd:COG1196 213 ERYRELKEELKELEAEllllkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 528 GLETlpdKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLE 607
Cdd:COG1196 292 ELLA---ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 608 DFKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTLDDAQRQvDDSMQRVLAKERASQSKALDLQSQLSRA 687
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL-EEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2069483775 688 KSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATNRSLQ 727
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
351-574 |
2.82e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 351 ESARQLAAKLQEKETQLAQALSTssdwCLRHSKEATAKGQLEEEVSALKLQVAELSSQL-RSAEDKSRTEREELRDQFQH 429
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIREL----AERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 430 VSAENASTKLDNQRLTVQLTSSE-EKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEAREVT 508
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2069483775 509 VSLEREKDQVkRELLDRLRgletlpDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQ 574
Cdd:COG4913 394 EALEEELEAL-EEALAEAE------AALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
274-491 |
3.28e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 274 RDHLESQLSRAETEKRHLNAQIQRMQQsydqqykELQALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESA 353
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRK-------ELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 354 RQLAAKLQEKETQLAQALSTSSDwclrhSKEATAKGQLEEEVSALKLQVAELSS-------QLRSAEDKSRTEREELRDQ 426
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPE-----LLQSPVIQQLRAQLAELEAELAELSArytpnhpDVIALRAQIAALRAQLQQE 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2069483775 427 FQHVSAENASTKLDNQRLTVQLTSSEEKLRG-------LQSEARRLKSTIKKHENLVEKYKKKVQQARLESE 491
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEArlaelpeLEAELRRLEREVEVARELYESLLQRLEEARLAEA 382
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
104-405 |
3.79e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 104 KNLSVLLREQESNRRS-KKADAGAEGR------KVDVLLRALVEAEIDGVAVANQLTALKETIDSLAKDKRLSKLHTASL 176
Cdd:TIGR02168 680 EELEEKIEELEEKIAElEKALAELRKEleeleeELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 177 RRQQELLIEKIEmfdHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFE 256
Cdd:TIGR02168 760 EAEIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 257 KENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHD-QQD 335
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSElRRE 916
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2069483775 336 REALALLTQQAERAEESARQLAAKLQEketQLAQALSTSSDWCLRHSKEATAKGQ-LEEEVSALKLQVAEL 405
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEeARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
175-521 |
4.72e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 175 SLRRQQELLIEKIEMFDHTNHSLRELL----REWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLA 250
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELsdasRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 251 KHL-DFEKENVKTTEELSKILESTRDH----LESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRK 325
Cdd:TIGR02169 765 ARIeELEEDLHKLEEALNDLEARLSHSripeIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 326 EEDQEHDQQDREALalltqqaeraeesarqLAAKLQEKETQLAqalstssdwclrhsKEATAKGQLEEEVSALKLQVAEL 405
Cdd:TIGR02169 845 LKEQIKSIEKEIEN----------------LNGKKEELEEELE--------------ELEAALRDLESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 406 SSQLRSAEDKSRT-----EREELRDQFQHVSAENASTKL----DNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHE--- 473
Cdd:TIGR02169 895 EAQLRELERKIEEleaqiEKKRKRLSELKAKLEALEEELseieDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpvn 974
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2069483775 474 NLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKRE 521
Cdd:TIGR02169 975 MLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
90-423 |
6.92e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 6.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 90 RDAEEQEEELDAVSKNLSV--LLREQESNRRSKKADAGAEGRKVDVLLRALVEAEidGVAVANQLTALKETIDSLAKDkr 167
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERldLIIDEKRQQLERLRREREKAERYQALLKEKREYE--GYELLKEKEALERQKEAIERQ-- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 168 lsklhTASLRRQQELLIEKIEMFDHTNHSLRELLREwsEHERESLVWSEQKDALKIRLADSEAENTRLlakftnKEKEAF 247
Cdd:TIGR02169 246 -----LASLEEELEKLTEEISELEKRLEEIEQLLEE--LNKKIKDLGEEEQLRVKEKIGELEAEIASL------ERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 248 KLAKHLDFEKENVKTTEELSKILESTRDhLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQ-----Q 322
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEE-LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDelkdyR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 323 QRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVSALKLQV 402
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340
....*....|....*....|.
gi 2069483775 403 AELSSQLRSAEDKSRTEREEL 423
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQREL 492
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
336-716 |
6.93e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 6.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 336 REALALLTQQAERAEESARQLAaKLQEKETQLAQALSTSSDWcLRHSKEATakgQLEEEVSALKLQVAELSSQLRSAEDk 415
Cdd:COG3096 295 FGARRQLAEEQYRLVEMARELE-ELSARESDLEQDYQAASDH-LNLVQTAL---RQQEKIERYQEDLEELTERLEEQEE- 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 416 srtEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKL-----RGLQ--------SEARRL----KSTIKKHENLVEK 478
Cdd:COG3096 369 ---VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALdvqqtRAIQyqqavqalEKARALcglpDLTPENAEDYLAA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 479 YKKKVQQA---RLESEEcclKL--------------EATQKEAREVTVSlerEKDQVKRELLDRLRGLETLPDKLRRAEQ 541
Cdd:COG3096 446 FRAKEQQAteeVLELEQ---KLsvadaarrqfekayELVCKIAGEVERS---QAWQTARELLRRYRSQQALAQRLQQLRA 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 542 QLRDVqeEADVHKRRNVEHSATLSEVRHKVE-QQGSQLEMFQQRNTLLQEENNVHK----EKMYNLERKLEDFKVENKEm 616
Cdd:COG3096 520 QLAEL--EQRLRQQQNAERLLEEFCQRIGQQlDAAEELEELLAELEAQLEELEEQAaeavEQRSELRQQLEQLRARIKE- 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 617 sdtLIAKEATIRSVQQQLEEkvcecnvLSRKLQHTLDDAQrQVDDSMQRVLAKERAsqskaldlqsqlsrAKSEMSQLQR 696
Cdd:COG3096 597 ---LAARAPAWLAAQDALER-------LREQSGEALADSQ-EVTAAMQQLLERERE--------------ATVERDELAA 651
|
410 420 430
....*....|....*....|....*....|
gi 2069483775 697 SKQEMERR----------FQSQLQNLKDRL 716
Cdd:COG3096 652 RKQALESQierlsqpggaEDPRLLALAERL 681
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
299-550 |
7.95e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 299 QQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDreALALLTQQAERAEESARQLAAKLQEKETQLAQalstssdwc 378
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLK--QLAALERRIAALARRIRALEQELAALEAELAE--------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 379 lrhskeatAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRdqfqhVSAENASTKLDN----QRLTVQLTSSEEK 454
Cdd:COG4942 88 --------LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALL-----LSPEDFLDAVRRlqylKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 455 LRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLEseecclkLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPD 534
Cdd:COG4942 155 LRADLAELAALRAELEAERAELEALLAELEEERAA-------LEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
250
....*....|....*.
gi 2069483775 535 KLRRAEQQLRDVQEEA 550
Cdd:COG4942 228 LIARLEAEAAAAAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
184-717 |
1.79e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 184 IEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTT 263
Cdd:PRK03918 154 ILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 264 EELSKILEStrdhLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALLT 343
Cdd:PRK03918 234 EELKEEIEE----LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 344 QQAERAEESARQLAAKLQEKETQLaqalstssdwclrhSKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSR--TERE 421
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKEL--------------EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAkkEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 422 ELRDQFQHVSAENASTKLDN-----QRLTVQLTSSEEKLRGLQSEARRLKSTIKK-------------------HENLVE 477
Cdd:PRK03918 376 RLKKRLTGLTPEKLEKELEElekakEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcgrelteehRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 478 KYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKdqvkrelldRLRGLETLPDKLRRAEQQLR--DVQE-EADVHK 554
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKES---------ELIKLKELAEQLKELEEKLKkyNLEElEKKAEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 555 RRNV-EHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIA-------KEAT 626
Cdd:PRK03918 527 YEKLkEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKelepfynEYLE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 627 IRSVQQQLEEKVCECNVLSRKLQHTLDDAQR----------QVDDSMQRVLAKE-RASQSKALDLQSQLSRAKSEMSQLQ 695
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAEtekrleelrkELEELEKKYSEEEyEELREEYLELSRELAGLRAELEELE 686
|
570 580
....*....|....*....|..
gi 2069483775 696 RSKQEMERrfqsQLQNLKDRLE 717
Cdd:PRK03918 687 KRREEIKK----TLEKLKEELE 704
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
277-489 |
2.35e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 277 LESQLSRAETEKRHLnAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQ---QDREALALLTQQAERAEESA 353
Cdd:COG4913 240 AHEALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAeleELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 354 RQLAAKLQEKETQLAQAlstssdwclrhskEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRT-------EREELRDQ 426
Cdd:COG4913 319 DALREELDELEAQIRGN-------------GGDRLEQLEREIERLERELEERERRRARLEALLAAlglplpaSAEEFAAL 385
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2069483775 427 FQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLE 489
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
257-490 |
3.97e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 257 KENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEED-------- 328
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEelaellra 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 329 -QEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQalstssdwcLRHSKE--ATAKGQLEEEVSALKLQVAEL 405
Cdd:COG4942 113 lYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEE---------LRADLAelAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 406 SSQLRSAEdKSRTEREELRdqfqhvsaenastkldnQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQ 485
Cdd:COG4942 184 EEERAALE-ALKAERQKLL-----------------ARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
....*
gi 2069483775 486 ARLES 490
Cdd:COG4942 246 AGFAA 250
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
89-522 |
6.25e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 6.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 89 QRDAEEQEEELDAVSKNLSVLLREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVAVANQLTALKETIDSLAKdkRL 168
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE--RL 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 169 SKLHTASLRRQQELLIEKIEMfDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEK---- 244
Cdd:COG1196 417 ERLEEELEELEEALAELEEEE-EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAArlll 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 245 ------------EAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQAL 312
Cdd:COG1196 496 lleaeadyegflEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 313 QKELQTVKQQQRKEEDQEHDQQDREALALltqQAERAEESARQLAAKLQEKETQLAQAlstssdWCLRHSKEATAKGQLE 392
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIGAAVDLV---ASDLREADARYYVLGDTLLGRTLVAA------RLEAALRRAVTLAGRL 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 393 EEVSALKLQVAELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKH 472
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 2069483775 473 ENLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKREL 522
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
287-550 |
7.43e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 7.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 287 EKRHLNAQIQRMQQsydqQYKELQALQKELQTVKQQqrkeedqehdqqdREALALLTQQAERAEESARQLAAKLQEKETq 366
Cdd:COG4913 219 EEPDTFEAADALVE----HFDDLERAHEALEDAREQ-------------IELLEPIRELAERYAAARERLAELEYLRAA- 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 367 laqalstssdwcLRHSKEATAKGQLEEEVSALKLQVAELS---SQLRSAEDKSRTEREELRDQ-FQHVSAENASTKLDNQ 442
Cdd:COG4913 281 ------------LRLWFAQRRLELLEAELEELRAELARLEaelERLEARLDALREELDELEAQiRGNGGDRLEQLEREIE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 443 RLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEEcclKLEATQKEAREVTVSLEREKDQvKREL 522
Cdd:COG4913 349 RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE---ELEALEEALAEAEAALRDLRRE-LREL 424
|
250 260
....*....|....*....|....*...
gi 2069483775 523 LDRLRGLETLPDKLRRAEQQLRDVQEEA 550
Cdd:COG4913 425 EAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
176-579 |
1.24e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 176 LRRQQELLIEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAEN-----TRLLAKFTNKEKEAFKLA 250
Cdd:COG4717 83 AEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAelaelPERLEELEERLEELRELE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 251 KHLDF-EKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQ 329
Cdd:COG4717 163 EELEElEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 330 EHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQA--LSTSSDWCLRHSKEATAKGQLEEEVSALK-LQVAELS 406
Cdd:COG4717 243 ERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLglLALLFLLLAREKASLGKEAEELQALPALEeLEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 407 SQLRSAEDKSRTEREELRDQFQHV-SAENASTKLDNQRLTVQLTSSEEKLRGLQSEArrlksTIKKHENLVEKYKKKVQQ 485
Cdd:COG4717 323 ELLAALGLPPDLSPEELLELLDRIeELQELLREAEELEEELQLEELEQEIAALLAEA-----GVEDEEELRAALEQAEEY 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 486 ARLESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQeeadvHKRRNVEHSATLS 565
Cdd:COG4717 398 QELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELE-----AELEQLEEDGELA 472
|
410
....*....|....
gi 2069483775 566 EVRHKVEQQGSQLE 579
Cdd:COG4717 473 ELLQELEELKAELR 486
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
271-658 |
1.51e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 271 ESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKElqtvkqqqrkEEDQEHDQQDREALALLTQQAERAE 350
Cdd:pfam15921 495 ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE----------GDHLRNVQTECEALKLQMAEKDKVI 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 351 ESARQLAaklqEKETQLAQalstssdwclRHSKEATA----KGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRD- 425
Cdd:pfam15921 565 EILRQQI----ENMTQLVG----------QHGRTAGAmqveKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDl 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 426 QFQHVSAENAST---------KLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVE------KYKKKVQQARLES 490
Cdd:pfam15921 631 ELEKVKLVNAGSerlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEtttnklKMQLKSAQSELEQ 710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 491 EECCLK-LEATQKEAREVTVSLEREKdQVKRELLDRLRgletlpDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRH 569
Cdd:pfam15921 711 TRNTLKsMEGSDGHAMKVAMGMQKQI-TAKRGQIDALQ------SKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVAT 783
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 570 KVEQQGSQLEMFQQRNTLLqeennvhKEKMYNLERKLEDFKVENKEMSDTliakeatirsVQQQLEEKVcecnvlSRKLQ 649
Cdd:pfam15921 784 EKNKMAGELEVLRSQERRL-------KEKVANMEVALDKASLQFAECQDI----------IQRQEQESV------RLKLQ 840
|
....*....
gi 2069483775 650 HTLDDAQRQ 658
Cdd:pfam15921 841 HTLDVKELQ 849
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
255-722 |
1.65e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 255 FEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEED-----Q 329
Cdd:pfam15921 54 FPKYEVELDSPRKIIAYPGKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDamadiR 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 330 EHDQQDREALALLTQQAERAEESARQLAAK-LQEKETQLAQALST--------SSDWCLRHSKEATAKGQLEEEVSALKL 400
Cdd:pfam15921 134 RRESQSQEDLRNQLQNTVHELEAAKCLKEDmLEDSNTQIEQLRKMmlshegvlQEIRSILVDFEEASGKKIYEHDSMSTM 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 401 QVAELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLtsseeklrgLQSEARRLKSTIKKHENLVEKYK 480
Cdd:pfam15921 214 HFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---------LQQHQDRIEQLISEHEVEITGLT 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 481 KKVQQARLESEECCLKLEATQKEAREvtvslerEKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADvhkRRNVEH 560
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARN-------QNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE---KQLVLA 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 561 SATLSEVRHKVEQqgsqlemFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVCE 640
Cdd:pfam15921 355 NSELTEARTERDQ-------FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNME 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 641 CNVLSRKLQHTLDDAQRQVDDSMQRVLAKERAsqskaldlqsqLSRAKSEMSQLQRSKqEMERRFQSQLQNLKDRLEQSD 720
Cdd:pfam15921 428 VQRLEALLKAMKSECQGQMERQMAAIQGKNES-----------LEKVSSLTAQLESTK-EMLRKVVEELTAKKMTLESSE 495
|
..
gi 2069483775 721 AT 722
Cdd:pfam15921 496 RT 497
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
164-718 |
1.67e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 164 KDKRLSKLHTASLRRQQELLIEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLlakfTNKE 243
Cdd:TIGR00618 320 MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTL----TQKL 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 244 KEAFKLAKHLDFEKENVKTteelskiLESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQ 323
Cdd:TIGR00618 396 QSLCKELDILQREQATIDT-------RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 324 RKEEDQEHDQQDrealalLTQQAERAEESARQLAAKLQEKETQLAQALstssdwclRHSKEATAKGQLEEEVSALKLQVA 403
Cdd:TIGR00618 469 KEREQQLQTKEQ------IHLQETRKKAVVLARLLELQEEPCPLCGSC--------IHPNPARQDIDNPGPLTRRMQRGE 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 404 ELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKstikkheNLVEKYKKKV 483
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-------DLTEKLSEAE 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 484 QQARLESEECCLKLEATQKEARevTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEhsat 563
Cdd:TIGR00618 608 DMLACEQHALLRKLQPEQDLQD--VRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLA---- 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 564 LSEVRHKVEQQGSQLEMFQQRNTLLQEEnnvhkekmynlERKLEDFKVENKEMSDTLIAKEATIrsvQQQLEekvcecnv 643
Cdd:TIGR00618 682 LQKMQSEKEQLTYWKEMLAQCQTLLREL-----------ETHIEEYDREFNEIENASSSLGSDL---AARED-------- 739
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2069483775 644 lsrKLQHTLDDAQRQVDDSMQ-RVLAKERASQSKALDLQSQlsrakSEMSQLQRSKQEMERRFQSQLQNLKDRLEQ 718
Cdd:TIGR00618 740 ---ALNQSLKELMHQARTVLKaRTEAHFNNNEEVTAALQTG-----AELSHLAAEIQFFNRLREEDTHLLKTLEAE 807
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
246-575 |
1.92e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 45.21 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 246 AFKLAKHLD---FEKENVKTTEELSKILESTRDHLE--SQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVK 320
Cdd:NF012221 1517 EFKGTGHNDglgYILDNVVATSESSQQADAVSKHAKqdDAAQNALADKERAEADRQRLEQEKQQQLAAISGSQSQLESTD 1596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 321 QQqrKEEDQEHDQqdREALalltqqaeraEESARQLAAKLqekeTQLAQALSTSSDwclrhskEATAKGQLEeevsalkl 400
Cdd:NF012221 1597 QN--ALETNGQAQ--RDAI----------LEESRAVTKEL----TTLAQGLDALDS-------QATYAGESG-------- 1643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 401 qvaelssqlrsaedksrterEELRDQFQHVSAENASTKLDNQRLTV--QLTSSEEKLRGLQSearRLKSTIKKHENLVEK 478
Cdd:NF012221 1644 --------------------DQWRNPFAGGLLDRVQEQLDDAKKISgkQLADAKQRHVDNQQ---KVKDAVAKSEAGVAQ 1700
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 479 YKKKVQQARLESEECCLKLEATQKEArevtvsLEREKDQVKRELLD-------RLRG---LETLPDKLRRAEQQLRDVQE 548
Cdd:NF012221 1701 GEQNQANAEQDIDDAKADAEKRKDDA------LAKQNEAQQAESDAnaaandaQSRGeqdASAAENKANQAQADAKGAKQ 1774
|
330 340
....*....|....*....|....*..
gi 2069483775 549 EADVHKRRNVEHSATLSEVRHKVEQQG 575
Cdd:NF012221 1775 DESDKPNRQGAAGSGLSGKAYSVEGVA 1801
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
265-660 |
3.63e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 265 ELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQrKEEDQEHDQQDREALALLTQ 344
Cdd:pfam07888 45 ELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKY-KELSASSEELSEEKDALLAQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 345 QAERA------EESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVSALKLQVAELSSQ---LRSAEDK 415
Cdd:pfam07888 124 RAAHEarirelEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEfqeLRNSLAQ 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 416 SRTEREELRD---QFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEE 492
Cdd:pfam07888 204 RDTQVLQLQDtitTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQ 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 493 CCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHK----RRNVEHSATLSEVR 568
Cdd:pfam07888 284 LTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEvelgREKDCNRVQLSESR 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 569 HKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEdfKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKL 648
Cdd:pfam07888 364 RELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLE--TVADAKWSEAALTSTERPDSPLSDSEDENPEALQPPRPL 441
|
410
....*....|..
gi 2069483775 649 QHTLDDAQRQVD 660
Cdd:pfam07888 442 GHYSLCEQGQPD 453
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
206-715 |
3.90e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 206 EHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAE 285
Cdd:pfam05483 230 EYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSM 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 286 TEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQR--KEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEK 363
Cdd:pfam05483 310 STQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSfvVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKK 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 364 ETQLAQ--ALSTSSDWCLRHSKEATA--------KGQLEEEVSALKLQVAELSSQLRSAEDK----------SRTEREEL 423
Cdd:pfam05483 390 SSELEEmtKFKNNKEVELEELKKILAedeklldeKKQFEKIAEELKGKEQELIFLLQAREKEihdleiqltaIKTSEEHY 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 424 RDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKE 503
Cdd:pfam05483 470 LKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 504 AREVTVSLEREKDQVKRelldrlrgletlpdKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQ 583
Cdd:pfam05483 550 LESVREEFIQKGDEVKC--------------KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQ 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 584 RNTLLQEEN-------NVHKEKMYNLERKLEDFKVENKEMSDT-----------------------LIAKEATI--RSVQ 631
Cdd:pfam05483 616 ENKALKKKGsaenkqlNAYEIKVNKLELELASAKQKFEEIIDNyqkeiedkkiseeklleevekakAIADEAVKlqKEID 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 632 QQLEEKVCECNVLSRKLQHTLDDAQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRS-------KQEMERR 704
Cdd:pfam05483 696 KRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQleiekeeKEKLKME 775
|
570
....*....|.
gi 2069483775 705 FQSQLQNLKDR 715
Cdd:pfam05483 776 AKENTAILKDK 786
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
277-481 |
4.29e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 277 LESQLSRAETEKRHLN------AQIQRM-------QQSYDQQYKELQALQKELQTVKQQ--------------------Q 323
Cdd:PRK04863 899 IREQLDEAEEAKRFVQqhgnalAQLEPIvsvlqsdPEQFEQLKQDYQQAQQTQRDAKQQafaltevvqrrahfsyedaaE 978
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 324 RKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKeTQLAQALSTSsdwclRHSKEATAKgQLEEEVSALKLQVA 403
Cdd:PRK04863 979 MLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQY-NQVLASLKSS-----YDAKRQMLQ-ELKQELQDLGVPAD 1051
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2069483775 404 ElssqlrSAEDKSRTEREELRDQFQHVSAENAStkldnqrLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKK 481
Cdd:PRK04863 1052 S------GAEERARARRDELHARLSANRSRRNQ-------LEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
264-543 |
5.08e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 264 EELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYD-QQYKELQ---ALQKeLQTVKQQQRKEEDQEHDQQDReaL 339
Cdd:PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDvQQTRAIQyqqAVQA-LERAKQLCGLPDLTADNAEDW--L 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 340 ALLTQQAERAEESARQLAAKLQ---------EKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVsALKLQVAELSSQLR 410
Cdd:PRK04863 445 EEFQAKEQEATEELLSLEQKLSvaqaahsqfEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQR-HLAEQLQQLRMRLS 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 411 SAEDKSRTER--EELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKH-ENLVEKYKKKVQQAR 487
Cdd:PRK04863 524 ELEQRLRQQQraERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQlEQLQARIQRLAARAP 603
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2069483775 488 --LESEECCLKLEATQKEAREVTVSLerekDQVKRELLDRLRGLETLPDKLRRAEQQL 543
Cdd:PRK04863 604 awLAAQDALARLREQSGEEFEDSQDV----TEYMQQLLERERELTVERDELAARKQAL 657
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
270-736 |
5.44e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 270 LESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQ-YKELQALQKELQtvkqqqRKEEDQEHDQQDREALALLTQQAER 348
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIE------RLERELEERERRRARLEALLAALGL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 349 AEESARQLAAKLQEKETQLAQALSTSSDWC-LRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRDQF 427
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALeEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 428 QH-------------VSAEN---------------------------ASTKLDNQRLTVQLTSSEEKLRGLQSEARRLks 467
Cdd:COG4913 454 GLdeaelpfvgelieVRPEEerwrgaiervlggfaltllvppehyaaALRWVNRLHLRGRLVYERVRTGLPDPERPRL-- 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 468 tikkHEN-LVEK--YKKKVQQARLESE-------ECCLKLEATQKEAREVTVSLE-------REKD------------QV 518
Cdd:COG4913 532 ----DPDsLAGKldFKPHPFRAWLEAElgrrfdyVCVDSPEELRRHPRAITRAGQvkgngtrHEKDdrrrirsryvlgFD 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 519 KRELLDRLRG-LETLPDKLRRAEQQLRDVQEEADVHKRRNVEHS--ATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVH 595
Cdd:COG4913 608 NRAKLAALEAeLAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSDDL 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 596 KEkmynLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTLDDAQRQVD---DSMQRVLAKERA 672
Cdd:COG4913 688 AA----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEERFAAALGDAV 763
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2069483775 673 SQSKALDLQSQLSRAKSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATNRSLQNYVHFLKTS 736
Cdd:COG4913 764 ERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEED 827
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
194-731 |
6.86e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 194 NHSLRELLREWSEHERESLVWSEQKD--ALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILE 271
Cdd:TIGR00606 477 DQELRKAERELSKAEKNSLTETLKKEvkSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKS 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 272 STRDHLESQLSRAETeKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREA------------- 338
Cdd:TIGR00606 557 RHSDELTSLLGYFPN-KKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSsyedklfdvcgsq 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 339 -----LALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAE 413
Cdd:TIGR00606 636 deesdLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTE 715
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 414 dkSRTEREELRDQFQHVSAENASTKLDnqRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYkkkvqQARLESEEC 493
Cdd:TIGR00606 716 --SELKKKEKRRDEMLGLAPGRQSIID--LKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTI-----MPEEESAKV 786
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 494 CLKleatqkearEVTVsLEREKDQVKrelldrlrgletlpDKLRRAEQQlrdvqeeadVHKRRNVEHSATLSEVRHKVEQ 573
Cdd:TIGR00606 787 CLT---------DVTI-MERFQMELK--------------DVERKIAQQ---------AAKLQGSDLDRTVQQVNQEKQE 833
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 574 QGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEAtirsVQQQLEEKVCECNVLSRKLQhtld 653
Cdd:TIGR00606 834 KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ----FEEQLVELSTEVQSLIREIK---- 905
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2069483775 654 DAQRQVddsmqrvlakerasqskaLDLQSQLSRAKSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATNRSLQNYVH 731
Cdd:TIGR00606 906 DAKEQD------------------SPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
318-718 |
7.19e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 7.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 318 TVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCL---RHSKEATAKGQLEEE 394
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEvleEHEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 395 VSALKLQVAELSSQLRSAEDKSRTER---EELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKK 471
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRerlEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 472 HENLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKrELLDRLRGLET----LPDKLRRAEQQLRDVQ 547
Cdd:PRK02224 340 HNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIE-ELEEEIEELRErfgdAPVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 548 EEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEkmynlerKLEDFKVENKEMSDTLIAKEATI 627
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVE-------TIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 628 RSVQQQLE--EKVCECNVLSRKLQHTLDDAQRQVDDSMQRVLAKERASQSK---ALDLQSQlSRAKSEMSQLQRSKQEME 702
Cdd:PRK02224 492 EEVEERLEraEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELrerAAELEAE-AEEKREAAAEAEEEAEEA 570
|
410 420
....*....|....*....|
gi 2069483775 703 RR----FQSQLQNLKDRLEQ 718
Cdd:PRK02224 571 REevaeLNSKLAELKERIES 590
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
222-366 |
9.12e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 9.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 222 KIRLADSEAENTRLLAKftnKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQS 301
Cdd:PRK12704 32 KIKEAEEEAKRILEEAK---KEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2069483775 302 YDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDR-EALALLTQ-QA-----ERAEESARQLAAKL-QEKETQ 366
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQElERISGLTAeEAkeillEKVEEEARHEAAVLiKEIEEE 181
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
269-420 |
9.46e-04 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 42.03 E-value: 9.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 269 ILESTRDHLESQLSRAETEKR---HLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQehdQQDREALALLTQQ 345
Cdd:pfam00529 62 SAEAQLAKAQAQVARLQAELDrlqALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQID---LARRRVLAPIGGI 138
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2069483775 346 AERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAkgQLEEEVSALKLQVAELSSQLRSA-EDKSRTER 420
Cdd:pfam00529 139 SRESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQA--EVRSELSGAQLQIAEAEAELKLAkLDLERTEI 212
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
248-372 |
9.57e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 9.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 248 KLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQ--YKELQALQKELQTVKQQQRK 325
Cdd:COG1579 28 ELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEALQKEIESLKRRISD 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2069483775 326 EEDQEHDQQdrEALALLTQQAERAEESARQLAAKLQEKETQLAQALS 372
Cdd:COG1579 108 LEDEILELM--ERIEELEEELAELEAELAELEAELEEKKAELDEELA 152
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
338-551 |
1.17e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 338 ALALLTQQAERAEESARQLAA---KLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAED 414
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQlqqEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 415 KSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEEcc 494
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE-- 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2069483775 495 lkLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEAD 551
Cdd:COG4942 169 --LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
301-707 |
1.30e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 301 SYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALLtQQAERAEESARQLaaKLQEKETQLAQalstsSDWCLR 380
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLI-QKFGRSLKAKKRF--SLLKKETIYLQ-----SAQRVE 878
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 381 HSKEATAKGQLE-EEVSALKLQVAELSSQLRsaeDKSRTEREELRDQFQHVSAENASTK--LDNQRLTVQLT---SSEEK 454
Cdd:COG5022 879 LAERQLQELKIDvKSISSLKLVNLELESEII---ELKKSLSSDLIENLEFKTELIARLKklLNNIDLEEGPSieyVKLPE 955
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 455 LRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEEcCLKLEATQKEAREVTVSLEREKDQVKRE--LLDRLRGLETL 532
Cdd:COG5022 956 LNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSE-LKNFKKELAELSKQYGALQESTKQLKELpvEVAELQSASKI 1034
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 533 PDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQ--GSQLEMFQQRNTLLQEENNVHKEKMYN----LERKL 606
Cdd:COG5022 1035 ISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSllDDKQLYQLESTENLLKTINVKDLEVTNrnlvKPANV 1114
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 607 EDFKVENKEMSDTLIAKEATIRSVQQQLEEKVcecNVLSrKLQHTLDDAQRQvdDSMQRVLA--------KERASQSKAL 678
Cdd:COG5022 1115 LQFIVAQMIKLNLLQEISKFLSQLVNTLEPVF---QKLS-VLQLELDGLFWE--ANLEALPSpppfaalsEKRLYQSALY 1188
|
410 420
....*....|....*....|....*....
gi 2069483775 679 DLQSQLSraKSEMSQLQRSKQEMERRFQS 707
Cdd:COG5022 1189 DEKSKLS--SSEVNDLKNELIALFSKIFS 1215
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
277-556 |
1.43e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 277 LESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTV------KQQQRKEEDQEHDQQDREALALLTQQAERAE 350
Cdd:COG3096 841 LRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQAnlladeTLADRLEELREELDAAQEAQAFIQQHGKALA 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 351 ESARQLAAkLQ---EKETQLAQALSTSSDWCLRHSKEATAKGQLE--------EEVSALKLQVAELSSQLRSAEDKSRTE 419
Cdd:COG3096 921 QLEPLVAV-LQsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVVqrrphfsyEDAVGLLGENSDLNEKLRARLEQAEEA 999
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 420 REELRDQFQHVSAENASTkldNQRLTVQLTSSEEKLRGLQSEARRLKST-IKKHENLVEKykkkvqqARLESEEccLKLE 498
Cdd:COG3096 1000 RREAREQLRQAQAQYSQY---NQVLASLKSSRDAKQQTLQELEQELEELgVQADAEAEER-------ARIRRDE--LHEE 1067
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2069483775 499 ATQKEARevtvslereKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRR 556
Cdd:COG3096 1068 LSQNRSR---------RSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAG 1116
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
238-728 |
1.64e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 238 KFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQ 317
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLS 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 318 TVKqqqrkEEDQEHDQQDREALAL------LTQQAERAEESARQLAAKLQEKETQLAQALSTSSDwclrhskeatAKGQL 391
Cdd:TIGR04523 205 NLK-----KKIQKNKSLESQISELkkqnnqLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK----------IKKQL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 392 EEEVSALKlQVAELSSQLRSAEDKSRTEREELRDQFQHVSaenastkldNQRLTVQLTSSEEKLRGLQSEARRLKSTIKK 471
Cdd:TIGR04523 270 SEKQKELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQDW---------NKELKSELKNQEKKLEEIQNQISQNNKIISQ 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 472 HENLVEKYKKKVQQARLESEECCLKLEATQKEARevtvSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEAD 551
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELEEKQNEIE----KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 552 VHKRRNVEHSATLSEVRHKVEQQGSQLEMfqqrntlLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQ 631
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKD-------LTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQ 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 632 QQLEEKVCECNVLSRKlqhtlddaQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEMERR-----FQ 706
Cdd:TIGR04523 489 KELKSKEKELKKLNEE--------KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFElkkenLE 560
|
490 500
....*....|....*....|..
gi 2069483775 707 SQLQNLKDRLEQSDATNRSLQN 728
Cdd:TIGR04523 561 KEIDEKNKEIEELKQTQKSLKK 582
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
235-718 |
1.86e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 235 LLAKFTNKEKEAFKlaKHLDFEKENVKTTEELSKILESTRDHLEsQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQK 314
Cdd:COG4717 47 LLERLEKEADELFK--PQGRKPELNLKELKELEEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 315 ELQTVKQQQRKEEDQEHDQQDREALALLTQQAE---RAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATakgql 391
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEelrELEEELEELEAELAELQEELEELLEQLSLATEEELQDLA----- 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 392 eEEVSALKLQVAELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSeekLRGLQSEARRLKSTIKK 471
Cdd:COG4717 199 -EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAA---LLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 472 HENLVekykkKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPdklrraeqqlRDVQEEAD 551
Cdd:COG4717 275 IAGVL-----FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP----------PDLSPEEL 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 552 VHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKvenkemsdtliAKEATIRSVQ 631
Cdd:COG4717 340 LELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQ-----------ELKEELEELE 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 632 QQLEEKVCECNVLSRKLQhtlddaQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEMERRfqSQLQN 711
Cdd:COG4717 409 EQLEELLGELEELLEALD------EEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELL--QELEE 480
|
....*..
gi 2069483775 712 LKDRLEQ 718
Cdd:COG4717 481 LKAELRE 487
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
115-487 |
1.90e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 115 SNRRSKKADAGAEGRKvDVL--LRALVEAEIDGVAVANQLTALKETIDSLAKDKRLSKLHTASLR---RQQEllieKIEM 189
Cdd:COG3096 277 ANERRELSERALELRR-ELFgaRRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQtalRQQE----KIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 190 FDHTNHSLRELLRE-----------WSEHERESLVWSEQKDALKIRLADS----EAENTRLLA--KFTNKEKEAFKLAKH 252
Cdd:COG3096 352 YQEDLEELTERLEEqeevveeaaeqLAEAEARLEAAEEEVDSLKSQLADYqqalDVQQTRAIQyqQAVQALEKARALCGL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 253 LDFEKENVKTTEELSKILESTRDH----LESQLSRAETEKRHlnaqiqrmqqsYDQQYKELQALQKEL------QTVKQQ 322
Cdd:COG3096 432 PDLTPENAEDYLAAFRAKEQQATEevleLEQKLSVADAARRQ-----------FEKAYELVCKIAGEVersqawQTAREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 323 QRKEEDQEHDQQDREALAllTQQAEraeesARQLAAKLQEKETQLAQalstssdWCLRHSKEATAKGQLEEEVSALKLQV 402
Cdd:COG3096 501 LRRYRSQQALAQRLQQLR--AQLAE-----LEQRLRQQQNAERLLEE-------FCQRIGQQLDAAEELEELLAELEAQL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 403 AELSSQLRSAEDKS---RTEREELRDQFQHVS--------AENASTKLDNQrLTVQLTSSEEKLRGLQSEARRLKSTIKK 471
Cdd:COG3096 567 EELEEQAAEAVEQRselRQQLEQLRARIKELAarapawlaAQDALERLREQ-SGEALADSQEVTAAMQQLLEREREATVE 645
|
410
....*....|....*.
gi 2069483775 472 HENLVEKYKKKVQQAR 487
Cdd:COG3096 646 RDELAARKQALESQIE 661
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
496-725 |
2.11e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 496 KLEATQKEAREVTVSLEREKDQvKRELLDRLRGLE----TLPDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKV 571
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKE-EKALLKQLAALErriaALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 572 EQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKvcecnvlSRKLQHT 651
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE-------RAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2069483775 652 LDDAQRQvddsmQRVLAKERASQSKAL-DLQSQLSRAKSEMSQLQRSKQemerrfqsQLQNLKDRLEQSDATNRS 725
Cdd:COG4942 180 LAELEEE-----RAALEALKAERQKLLaRLEKELAELAAELAELQQEAE--------ELEALIARLEAEAAAAAE 241
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
537-673 |
2.35e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 537 RRAEQQLRDVQEEADVHKRRnvehsaTLSEVRHKVEQQGSQLEM-FQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKE 615
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKE------ALLEAKEEIHKLRNEFEKeLRERRNELQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2069483775 616 msdtLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTL--------DDAQRQVDDSMQRVLAKERAS 673
Cdd:PRK12704 112 ----LEKKEKELEQKQQELEKKEEELEELIEEQLQELerisgltaEEAKEILLEKVEEEARHEAAV 173
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
310-654 |
2.45e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 310 QALQKELQTVKQQQRKEEDQEHDQQDRE-ALALLtQQAERAEESARQLAAKLQEKETQLAQALSTSSDwcLRHSKEATAK 388
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEqTLALL-DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEA--LKDDNDEETR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 389 GQLEeevsalKLQVAELSSQLrsaedksrterEELRDQFQHVSAENASTkldNQRLTVQLTSSEEKLRGLQSEARRLK-- 466
Cdd:PRK11281 116 ETLS------TLSLRQLESRL-----------AQTLDQLQNAQNDLAEY---NSQLVSLQTQPERAQAALYANSQRLQqi 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 467 STIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEarevtvsLEREKDQVKRELLDRLRGLETLpdKLRRAEQQLRDV 546
Cdd:PRK11281 176 RNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQR-------KSLEGNTQLQDLLQKQRDYLTA--RIQRLEHQLQLL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 547 QEEADvHKRRnvehsaTLSEvrHKVEQ-QGSQLEMFQQRNTLLQEENNVhkekmynlerkledfkveNKEMSDTLIakEA 625
Cdd:PRK11281 247 QEAIN-SKRL------TLSE--KTVQEaQSQDEAARIQANPLVAQELEI------------------NLQLSQRLL--KA 297
|
330 340 350
....*....|....*....|....*....|....
gi 2069483775 626 TIRS---VQQQLEEKvcecNVLSRKLQ--HTLDD 654
Cdd:PRK11281 298 TEKLntlTQQNLRVK----NWLDRLTQseRNIKE 327
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
194-465 |
2.51e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 194 NHSLRELLREWSEHERESLVWSEQKDALKIRLAdseaentrLLAKFtnkekeaFKLAKHLDFE--KENVKTTEELSKILE 271
Cdd:COG3096 842 RQRRSELERELAQHRAQEQQLRQQLDQLKEQLQ--------LLNKL-------LPQANLLADEtlADRLEELREELDAAQ 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 272 STRDHLESQLSRAETEKRHLNAqIQRMQQSYDQQYKELQALQKELQTVKQQ--------QRKE------------EDQEH 331
Cdd:COG3096 907 EAQAFIQQHGKALAQLEPLVAV-LQSDPEQFEQLQADYLQAKEQQRRLKQQifalsevvQRRPhfsyedavgllgENSDL 985
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 332 DQQDREALALLTQQAERAEESARQLAAKLQEKeTQLAQALSTSsdwclRHSKEATAKgQLEEEVSALKLQVAElssqlrS 411
Cdd:COG3096 986 NEKLRARLEQAEEARREAREQLRQAQAQYSQY-NQVLASLKSS-----RDAKQQTLQ-ELEQELEELGVQADA------E 1052
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2069483775 412 AEDKSRTEREELRDQFQHVSAENAStkldnqrLTVQLTSSEEKLRGLQSEARRL 465
Cdd:COG3096 1053 AEERARIRRDELHEELSQNRSRRSQ-------LEKQLTRCEAEMDSLQKRLRKA 1099
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
303-704 |
2.60e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 303 DQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHS 382
Cdd:PTZ00121 1090 DEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEA 1169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 383 KEATAKGQLEEEVSALKLQVAElssQLRSAEDKSRTerEELRDQFQHVSAENASTKLDNQRltVQLTSSEEKLRGLQSEA 462
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEVRKAE---ELRKAEDARKA--EAARKAEEERKAEEARKAEDAKK--AEAVKKAEEAKKDAEEA 1242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 463 RRLKstiKKHENLVEKYKKKVQQARLESEECCLKLEATQK-----EAREVTVSLEREKDQVKRElLDRLRGLETLPDKLR 537
Cdd:PTZ00121 1243 KKAE---EERNNEEIRKFEEARMAHFARRQAAIKAEEARKadelkKAEEKKKADEAKKAEEKKK-ADEAKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 538 RAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKV------ 611
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKadeakk 1398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 612 ---ENKEMSDTLIAKEATIRSVQQ--QLEEKVCECNVLSRKLQHT--LDDAQRQVDDSMQRVLAKERASQSKALDLQSQL 684
Cdd:PTZ00121 1399 kaeEDKKKADELKKAAAAKKKADEakKKAEEKKKADEAKKKAEEAkkADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
410 420
....*....|....*....|
gi 2069483775 685 SRAKSEMSQLQRSKQEMERR 704
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKK 1498
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
231-651 |
3.15e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 231 ENTRLLAKFTNKEKEAFKLAKHLDFEKENVkttEELSKILESTrdhlESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQ 310
Cdd:TIGR04523 212 KNKSLESQISELKKQNNQLKDNIEKKQQEI---NEKTTEISNT----QTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 311 ALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLA------AKLQEKETQLAQALSTSSdwclrhSKE 384
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISqnnkiiSQLNEQISQLKKELTNSE------SEN 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 385 ATAKGQLEEEVSALKLQVAELSSQLRSAEdKSRTEREELRDQFQHVsaenastKLDNQRLTVQLTSSEEKLRGLQSEARR 464
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIK-NLESQINDLESKIQNQ-------EKLNQQKDEQIKKLQQEKELLEKEIER 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 465 LKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREK---DQVKRELLDRLRGLETLPDKLRRAEQ 541
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKqnlEQKQKELKSKEKELKKLNEEKKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 542 QLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNT--LLQEENNVHKEKMYNLERKLEDFKVENKEMSDT 619
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQEL 590
|
410 420 430
....*....|....*....|....*....|..
gi 2069483775 620 LIAKEATIRSVQQQLEEKVCECNVLSRKLQHT 651
Cdd:TIGR04523 591 IDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
440-559 |
3.93e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 440 DNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQarLESEECCLKLEAtQKEAREVTVSLEREKDQVK 519
Cdd:PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK--LQEEEDKLLEEA-EKEAQQAIKEAKKEADEII 590
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2069483775 520 RELLDRLRGLET------LPDKLRRAEQQLRDVQEEADVHKRRNVE 559
Cdd:PRK00409 591 KELRQLQKGGYAsvkaheLIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
521-737 |
4.24e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 521 ELLDRLRGLETLPDKLRRaEQQLRDVQEEADVHKRRNVEHSATLSEVRHKveqqgsQLEMFQQRNTLLQEennvhKEKMY 600
Cdd:COG5022 811 EYRSYLACIIKLQKTIKR-EKKLRETEEVEFSLKAEVLIQKFGRSLKAKK------RFSLLKKETIYLQS-----AQRVE 878
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 601 NLERKLEDFKVENKE---MSDTLIAKEATI----RSVQQQLEEKVCECNVLSRKLQHTLDDA--------QRQVDDSMQR 665
Cdd:COG5022 879 LAERQLQELKIDVKSissLKLVNLELESEIielkKSLSSDLIENLEFKTELIARLKKLLNNIdleegpsiEYVKLPELNK 958
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 666 VLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEMERRFQ---------SQLQNLKDRLEQSDATNRSLQNYVHFLKTS 736
Cdd:COG5022 959 LHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKelaelskqyGALQESTKQLKELPVEVAELQSASKIISSE 1038
|
.
gi 2069483775 737 Y 737
Cdd:COG5022 1039 S 1039
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
393-541 |
4.30e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 393 EEVSALKLQVAELSSQLRSAEDKSRTEREELRDQFQHVSAENAStklDNQRLTVQLtssEEKLRGLQSEARRLKSTIKKH 472
Cdd:COG2433 366 DEVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELT---EEEEEIRRL---EEQVERLEAEVEELEAELEEK 439
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2069483775 473 ENLVEKYKKKVQQARLESEEcclklEAtqKEAREVTvSLEREKDQVKRELLDRLRGLETLPDKLRRAEQ 541
Cdd:COG2433 440 DERIERLERELSEARSEERR-----EI--RKDREIS-RLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
245-526 |
4.51e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 245 EAFKLAKHLDFEKENVKTTeelskiLESTRDHLES-QLSRAETEKrhLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQ 323
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQD------LEQTLALLDKiDRQKEETEQ--LKQQLAQAPAKLRQAQAELEALKDDNDEETRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 324 rkeedqehdqqdrealalltqqaeRAEESARQLAAKLQEKETQLAQALSTSSDWclrHSKEATAKGQLEE---EVSALKL 400
Cdd:PRK11281 118 ------------------------LSTLSLRQLESRLAQTLDQLQNAQNDLAEY---NSQLVSLQTQPERaqaALYANSQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 401 QVAELSSQLRSAEDKSRTEREELRDQFQhvsAE----NASTKLDNQRLTV--QLTSSEEKLRGLQSEarrlkstikkHEN 474
Cdd:PRK11281 171 RLQQIRNLLKGGKVGGKALRPSQRVLLQ---AEqallNAQNDLQRKSLEGntQLQDLLQKQRDYLTA----------RIQ 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2069483775 475 LVEKYKKKVQQA----RL-ESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRL 526
Cdd:PRK11281 238 RLEHQLQLLQEAinskRLtLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRL 294
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
275-489 |
4.60e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.42 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 275 DHLE-SQLSrAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQ------QRKE--EDQEHD---------QQDR 336
Cdd:PRK10929 190 DELElAQLS-ANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQReaeralESTEllAEQSGDlpksivaqfKINR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 337 EALALLTQQAERAEESA---RQLAAKLQeketQLAQALST---SSDWClrhsKEATAKGQleeevsALKLQVAEL----- 405
Cdd:PRK10929 269 ELSQALNQQAQRMDLIAsqqRQAASQTL----QVRQALNTlreQSQWL----GVSNALGE------ALRAQVARLpempk 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 406 SSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQrltvQLTSSEEKLRGLQSEARR--LKSTIKKHENLV-EKYKKK 482
Cdd:PRK10929 335 PQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQADGQ----PLTAEQNRILDAQLRTQRelLNSLLSGGDTLIlELTKLK 410
|
....*..
gi 2069483775 483 VQQARLE 489
Cdd:PRK10929 411 VANSQLE 417
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
154-719 |
5.01e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 154 ALKETIDSLAKD-KRLSKLHTA--SLRRQQELLIEKIEMFDH---------TNHSLRELLREWsEHERESLVWSEQKDAL 221
Cdd:COG4913 222 DTFEAADALVEHfDDLERAHEAleDAREQIELLEPIRELAERyaaarerlaELEYLRAALRLW-FAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 222 KIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDfeKENVKTTEELskilESTRDHLESQLSRAETEKRHLNAQIQRMQQS 301
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIR--GNGGDRLEQL----EREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 302 YDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDrealalltqqaeRAEESARQLAAKLQEKETQLAQALSTSSDWclrH 381
Cdd:COG4913 375 LPASAEEFAALRAEAAALLEALEEELEALEEALA------------EAEAALRDLRRELRELEAEIASLERRKSNI---P 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 382 SKEATAKGQLEEE--VSALKLQ-VAELsSQLRSAEDKSRT--EReELRDQF-------QHVSAenASTKLDNQRLTVQLT 449
Cdd:COG4913 440 ARLLALRDALAEAlgLDEAELPfVGEL-IEVRPEEERWRGaiER-VLGGFAltllvppEHYAA--ALRWVNRLHLRGRLV 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 450 SSEEKLRGLQSEARRLkstikkHEN-LVEK--YKKKVQQARLESE-------ECCLKLEATQKEAREVTVSLEREKDQVK 519
Cdd:COG4913 516 YERVRTGLPDPERPRL------DPDsLAGKldFKPHPFRAWLEAElgrrfdyVCVDSPEELRRHPRAITRAGQVKGNGTR 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 520 RELLDRLRGLETL------PDKLRRAEQQLRDVQEEADVHKRRNvehsATLSEVRHKVEQQGSQLEMFQQrntLLQEENN 593
Cdd:COG4913 590 HEKDDRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERL----EALEAELDALQERREALQRLAE---YSWDEID 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 594 V--HKEKMYNLERKLEDFKVENKEMsDTLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTLDDAQRQVDDSMQRVLAKE- 670
Cdd:COG4913 663 VasAEREIAELEAELERLDASSDDL-AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEd 741
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 2069483775 671 RASQSKALDLQSQLSRAksemsQLQRSKQEMERRFQSQLQNLKDRLEQS 719
Cdd:COG4913 742 LARLELRALLEERFAAA-----LGDAVERELRENLEERIDALRARLNRA 785
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
333-555 |
5.23e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 333 QQDREALALLTQQAERAEESARQLAAKLQE-KETQLAQALSTSSDwclrhskeatakgQLEEEVSALKLQVAELSSQLRS 411
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEfRQKNGLVDLSEEAK-------------LLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 412 AEDKSRTEREELRDQFQHVSAENASTKLdnQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQarlESE 491
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVI--QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---EAQ 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2069483775 492 ECCLKLEATQKEAREVTVSLEREKDQVKRELLdrlrgletlpdKLRRAEQQLRDVQEEADVHKR 555
Cdd:COG3206 313 RILASLEAELEALQAREASLQAQLAQLEARLA-----------ELPELEAELRRLEREVEVARE 365
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
254-734 |
5.43e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 254 DFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQ---SYDQQYKELQALQKELQTVKQQQRKEEDQE 330
Cdd:pfam15921 131 DIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSM 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 331 HDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSS---DWCLRHSKEATAK--GQLEEEVSALKLQVAEL 405
Cdd:pfam15921 211 STMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQnkiELLLQQHQDRIEQliSEHEVEITGLTEKASSA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 406 SSQLRSAEDKSRTEREELRDQfqhvsaenastkldNQRLTVQLTSSEEKLRGLQSEARRLKSTikkHENLVEKYKKKVQQ 485
Cdd:pfam15921 291 RSQANSIQSQLEIIQEQARNQ--------------NSMYMRQLSDLESTVSQLRSELREAKRM---YEDKIEELEKQLVL 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 486 ARLESEECCLKLEATQKEA----------------REVTVSLEREKDqvkRELLDRLRGLETLPDKLRRA---------- 539
Cdd:pfam15921 354 ANSELTEARTERDQFSQESgnlddqlqklladlhkREKELSLEKEQN---KRLWDRDTGNSITIDHLRRElddrnmevqr 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 540 -EQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSD 618
Cdd:pfam15921 431 lEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 619 TLIAKEATIRSVQQQLEEKVCECNVLSRKLQHtLDDAQRQVDDSMQRVLAKE------RASQSKALDLQSQLSRAKSEM- 691
Cdd:pfam15921 511 AIEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTECEALKLQMAEKDkvieilRQQIENMTQLVGQHGRTAGAMq 589
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2069483775 692 -SQLQRSKQEMERRFqsQLQNLKDRLEQSDATNRSLQNYVHFLK 734
Cdd:pfam15921 590 vEKAQLEKEINDRRL--ELQEFKILKDKKDAKIRELEARVSDLE 631
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
129-355 |
5.45e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 5.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 129 RKVDVLLRALVEAEIDGVAVANQLTALKETIDSLAKDKRL---------SKLHTASLRRQQELLIEKIEMFDHTNHSLRE 199
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlqrlaeyswDEIDVASAEREIAELEAELERLDASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 200 LLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAK----HLDFEKENVKTTEELSKILESTRD 275
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlarlELRALLEERFAAALGDAVERELRE 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 276 HLESQLSRAETEKRHLNAQIQRMQQSYDQQYK--------------ELQALQKELQTVK--QQQRKEEDQEHDQQDREaL 339
Cdd:COG4913 770 NLEERIDALRARLNRAEEELERAMRAFNREWPaetadldadleslpEYLALLDRLEEDGlpEYEERFKELLNENSIEF-V 848
|
250
....*....|....*.
gi 2069483775 340 ALLTQQAERAEESARQ 355
Cdd:COG4913 849 ADLLSKLRRAIREIKE 864
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
150-489 |
6.78e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 150 NQLTALKETIDSLAKDKRLSKLHTASLRRQqelLIEKiemfdhtNHSLRELLREWSEHERESLVWSEQKDALKIRLADSE 229
Cdd:TIGR04523 335 KIISQLNEQISQLKKELTNSESENSEKQRE---LEEK-------QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 230 AENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKEL 309
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 310 QALQKELQTVKQQQrkEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTssdwcLRHSKEATAKG 389
Cdd:TIGR04523 485 EQKQKELKSKEKEL--KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE-----LNKDDFELKKE 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 390 QLEEEVSALKLQVAELSsQLRSAEDKSRTEREELRDQFQhvsAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTI 469
Cdd:TIGR04523 558 NLEKEIDEKNKEIEELK-QTQKSLKKKQEEKQELIDQKE---KEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
330 340
....*....|....*....|
gi 2069483775 470 KKHENLVEKYKKKVQQARLE 489
Cdd:TIGR04523 634 KNIKSKKNKLKQEVKQIKET 653
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
414-637 |
6.99e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 6.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 414 DKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLEseec 493
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 494 clkLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQ 573
Cdd:COG4942 99 ---LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2069483775 574 QGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEK 637
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
263-371 |
7.02e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 39.81 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 263 TEELSKILEStrdhLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALL 342
Cdd:PRK00409 515 KEKLNELIAS----LEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEII 590
|
90 100 110
....*....|....*....|....*....|
gi 2069483775 343 TQQAERAEESARQLAAK-LQEKETQLAQAL 371
Cdd:PRK00409 591 KELRQLQKGGYASVKAHeLIEARKRLNKAN 620
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
268-731 |
9.19e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.57 E-value: 9.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 268 KILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQqrkeedQEHDQQDREALalltQQAE 347
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQS------HAYLTQKREAQ----EEQL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 348 RAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQleEEVSALKLQVAELSSQLRSAEdksrTEREELRDQF 427
Cdd:TIGR00618 257 KKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHI--KAVTQIEQQAQRIHTELQSKM----RSRAKLLMKR 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 428 QHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEAREV 507
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 508 TVSLEREKDQVKRELLDRLRGLETLpdKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGsQLEMFQQRNTL 587
Cdd:TIGR00618 411 TIDTRTSAFRDLQGQLAHAKKQQEL--QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ-TKEQIHLQETR 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 588 LQEENNVHKEKMYNLERKLEDFKVE-NKEMSDTLIAKEATIRSvqQQLEEKVCECNVLSRKLQHTLDDAQRQVddsmQRV 666
Cdd:TIGR00618 488 KKAVVLARLLELQEEPCPLCGSCIHpNPARQDIDNPGPLTRRM--QRGEQTYAQLETSEEDVYHQLTSERKQR----ASL 561
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2069483775 667 LAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATNRSLQNYVH 731
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD 626
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
84-723 |
9.89e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.57 E-value: 9.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 84 GGTGLQRDAEEQEEELDAVSKNLSVLLREQESNRRS-KKADAGAEGRKVDVLLRALVEAEIDGVAVANQLTALKETIDSL 162
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQeLKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 163 AKDKRLSKLHTASLRRQQELlieKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNK 242
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEK---EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 243 EKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQA------LQKEL 316
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSaaklkeEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 317 QTVKQQQRKEEDQEHDQQDREALALLTQQAER---AEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEE 393
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEIleeEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 394 EVSALKLQVAELSSQLRSAEDKSRTEREEL--------------------RDQFQHVSAENASTK------LDNQRLTVQ 447
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLkvllalikdgvggriisahgRLGDLGVAVENYKVAistaviVEVSATADE 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 448 LTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLR 527
Cdd:pfam02463 560 VEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 528 GLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMynlERKLE 607
Cdd:pfam02463 640 SAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE---LKKLK 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483775 608 DFKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTLDDAQRQVDDSMQRVLAKERASQSKALDLQSQLSRA 687
Cdd:pfam02463 717 LEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKL 796
|
650 660 670
....*....|....*....|....*....|....*.
gi 2069483775 688 KSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATN 723
Cdd:pfam02463 797 KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE 832
|
|
| |
