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Conserved domains on  [gi|2015600349|ref|XP_040140906|]
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protein GVQW3 isoform X2 [Ictidomys tridecemlineatus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 9-53 2.87e-08

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


:

Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 48.67  E-value: 2.87e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2015600349   9 RISIKFCVKLNKSASETHHLLKEAYGDEVMSRARVFDWHKRFKEG 53
Cdd:pfam17906   5 RHCILYEFLQGKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSG 49
HTH_32 pfam13565
Homeodomain-like domain;
43-108 5.50e-06

Homeodomain-like domain;


:

Pssm-ID: 463923 [Multi-domain]  Cd Length: 73  Bit Score: 43.05  E-value: 5.50e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2015600349  43 VFDWHKRFKE-GREDVRDDARSGRPVTHrTDENIQKVKDLVCSNRQLTVRMMAEELNLD------KETVRLIL 108
Cdd:pfam13565   2 VYRWRKRYNEeGLEGLEDRPRRGRPRKL-TDEQEARLLALLCEEPRWSPRLLAERLEEEfgvkvsRSTVRRIL 73
 
Name Accession Description Interval E-value
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 9-53 2.87e-08

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 48.67  E-value: 2.87e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2015600349   9 RISIKFCVKLNKSASETHHLLKEAYGDEVMSRARVFDWHKRFKEG 53
Cdd:pfam17906   5 RHCILYEFLQGKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSG 49
HTH_32 pfam13565
Homeodomain-like domain;
43-108 5.50e-06

Homeodomain-like domain;


Pssm-ID: 463923 [Multi-domain]  Cd Length: 73  Bit Score: 43.05  E-value: 5.50e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2015600349  43 VFDWHKRFKE-GREDVRDDARSGRPVTHrTDENIQKVKDLVCSNRQLTVRMMAEELNLD------KETVRLIL 108
Cdd:pfam13565   2 VYRWRKRYNEeGLEGLEDRPRRGRPRKL-TDEQEARLLALLCEEPRWSPRLLAERLEEEfgvkvsRSTVRRIL 73
Csa3 COG3415
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ...
 39-110 8.04e-04

CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system


Pssm-ID: 442641 [Multi-domain]  Cd Length: 325  Bit Score: 39.83  E-value: 8.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2015600349  39 SRARVFDWHKRFKEGRED-VRDDARSGRPvTHRTDENIQKVKDLVCS-----NRQLTVRMMAEEL------NLDKETVRL 106
Cdd:COG3415    51 SRSTVYRWLKRYREGGLAgLKDRPRGGRP-SKLSDEQRERLLELLREkspdqGSRWTLAELAELLeeefgvEVSPSTVRR 129


                  ....
gi 2015600349 107 ILKE 110
Cdd:COG3415   130 LLKR 133
 
Name Accession Description Interval E-value
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 9-53 2.87e-08

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 48.67  E-value: 2.87e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2015600349   9 RISIKFCVKLNKSASETHHLLKEAYGDEVMSRARVFDWHKRFKEG 53
Cdd:pfam17906   5 RHCILYEFLQGKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSG 49
HTH_32 pfam13565
Homeodomain-like domain;
43-108 5.50e-06

Homeodomain-like domain;


Pssm-ID: 463923 [Multi-domain]  Cd Length: 73  Bit Score: 43.05  E-value: 5.50e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2015600349  43 VFDWHKRFKE-GREDVRDDARSGRPVTHrTDENIQKVKDLVCSNRQLTVRMMAEELNLD------KETVRLIL 108
Cdd:pfam13565   2 VYRWRKRYNEeGLEGLEDRPRRGRPRKL-TDEQEARLLALLCEEPRWSPRLLAERLEEEfgvkvsRSTVRRIL 73
Csa3 COG3415
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ...
 39-110 8.04e-04

CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system


Pssm-ID: 442641 [Multi-domain]  Cd Length: 325  Bit Score: 39.83  E-value: 8.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2015600349  39 SRARVFDWHKRFKEGRED-VRDDARSGRPvTHRTDENIQKVKDLVCS-----NRQLTVRMMAEEL------NLDKETVRL 106
Cdd:COG3415    51 SRSTVYRWLKRYREGGLAgLKDRPRGGRP-SKLSDEQRERLLELLREkspdqGSRWTLAELAELLeeefgvEVSPSTVRR 129


                  ....
gi 2015600349 107 ILKE 110
Cdd:COG3415   130 LLKR 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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