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Conserved domains on  [gi|1958782841|ref|XP_038968087|]
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tRNA (32-2'-O)-methyltransferase regulator THADA isoform X6 [Rattus norvegicus]

Protein Classification

THADA/TRM732 family protein( domain architecture ID 10563587)

thyroid adenoma-associated protein (THADA)/TRM732 family protein is a DUF2428 domain-containing protein; similar to Homo sapiens thyroid adenoma-associated protein (THADA) and the tRNA -methyltransferase non-catalytic subunit TRM732

Gene Ontology:  GO:0030488
PubMed:  17889454

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF2428 pfam10350
THADA/TRM732, DUF2428; This conserved domain is found in Thyroid adenoma-associated proteins ...
938-1114 1.35e-29

THADA/TRM732, DUF2428; This conserved domain is found in Thyroid adenoma-associated proteins (THADA) and the yeast homolog, TRM732. Trm732 forms a complex with the methyltransferase Trm7 to 2'- O-methylate tRNA residue 32 (Nm32), being required for Trm7 methylation activity. In humans, mutations of the Trm7 homolog FTSJ1, which interacts with THADA, impair Nm32 modifications, associated with non-syndromic X-linked intellectual disability. It has been suggested that these proteins may play a role in additional biological processes not related to translation. This domain contains a RRSAGLP conserved motif that is required for tRNA modification activity (Funk HM et.al., Preprint from bioRxiv, 03 Jun 2021 DOI: 10.1101/2021.06.03.446962).


:

Pssm-ID: 463054 [Multi-domain]  Cd Length: 260  Bit Score: 119.00  E-value: 1.35e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  938 PVLGKLLLLSYRLSTVVSPVIQSSSPEGLIPMDTDSESASrlqvilneiqprdtndyfsqakilkecdsfdledlstsvs 1017
Cdd:pfam10350    1 SLLERLLLLCERIWSIVLPVLCDDSPEGHLPEDLDDMDDD---------------------------------------- 40
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841 1018 nidssaEIKGKEEKACDVTAQMVLTCCWRSMKEVALLLGTLCQLLPLQPVPESAAGLLTVQQVKEIGEYFKQHLLQSRHR 1097
Cdd:pfam10350   41 ------STIDESEETEGLTHQILLSCSWRALKESSLLLGTIVKRVPLTTSPSNGDQLLTVEQLERIGELFFTQLLELRHR 114
                          170
                   ....*....|....*..
gi 1958782841 1098 GAFELAYTGFVKLTEIL 1114
Cdd:pfam10350  115 GAFETVYVGFTALCRRL 131
COG5543 super family cl47095
Uncharacterized conserved protein [Function unknown];
394-1107 2.08e-06

Uncharacterized conserved protein [Function unknown];


The actual alignment was detected with superfamily member COG5543:

Pssm-ID: 227830 [Multi-domain]  Cd Length: 1400  Bit Score: 52.31  E-value: 2.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  394 EYVYTHWEHPLDALRHQTKIIFRNLLQMHRLTIEGADLvtDPFFLELTKSLLQLEWHIKGKYACLGYLVESLGIEHILAI 473
Cdd:COG5543    108 EEVRDFGHLGRYKEEEAKTDFFSKLLELQLGRCPKEAV--KDVLFNWMNHLLLLLSGADVASQLIIFLMFYKLAVKYKVY 185
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  474 DKTIPSQILEVMGDQSLVPYASDLLETMFKN-HKSHLKSQT-VTNTWMDKWHETwvfpvlsVLCGGNLDQRSYVIDYYL- 550
Cdd:COG5543    186 DPRFLHKSKTLLHLIHLARAVLKTIIAYLLNrVDLVFNEFEgEEVMWMNLWCPK-------DLKYIHDKQPADPDSIRAv 258
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  551 PRLLNYSPE-SLHYMVQILQtpidtetgscNHRGALGALMACLRTARAHGHLqsathawENLVCS---ARVKQGLIHQHC 626
Cdd:COG5543    259 KRLFSSMPKaSFRYSLRILK----------NKDERFFVYLPDLKISTGYSIL-------RELLGKlspDRVRSIIKIVGD 321
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  627 QVRIDTLGLLCESSRSTEVVSREEMQWVQFFLTYNLNSQSPGVRQQICSLLTKLFCRIQESsqvLYKLEQRNSTPDSEKR 706
Cdd:COG5543    322 EYKLQSFARLFLPLKMSDPQRFFTFRSVEVRIESLFHIDGVGLRRRFLESMQHFFIRSRSM---LKSLARYFRKFPDEQL 398
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  707 STREQpsvsLQQYKNFMSSVCNILFEALFPGSSYSTRFSALTILGSIAEVFPASKGNIQTVYQLSHD--------IDAGR 778
Cdd:COG5543    399 WLKEK----VEEAHKFLTMYLEVIKPMLRPTNAYQRVLGSLYLMDSLIAEGIDKSTPQKFLIQNKREfpfsaqllFDSDH 474
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  779 FQILMECFTSTFEEVKTLAFDLLMNLSSvtAGQLQGSEKLQDLFQAALELSTSTKPYDC---VTASYLLNLLIwqdalpa 855
Cdd:COG5543    475 ERLMIDLLVSNYADIRKLSTKILLGLES--MSESRGLFLDTLDANALKVKIESHQSHDVhgdAGATVYCVEFI------- 545
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  856 slsASSAQQPTCGageksavverNTLVVIKCLMENLE-DEISQAENSLlqaassFPMYGRVHCITRAFQKLPLHDlrlvS 934
Cdd:COG5543    546 ---KSCQSRSFVG----------HTKSILDSHMKNFVsGKKSMEEISI------GPHFAALSLILGLFNSEENHQ----D 602
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  935 EWKpVLGKLLLLSYRLSTVVSPVIQSSSPEGLIPmdtdsesasrlqvilneiqprdtndyfsqakilkecdsfdledlst 1014
Cdd:COG5543    603 TSK-ILSELIEHDIITWVDIVYVCCFDSLSGVLP---------------------------------------------- 635
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841 1015 svsnidssaeikgKEEKACDVTAQMVLTCCWRSMKEVALLLGTLCQLLPLQPvpesaaglltvQQVKEIGEYFKQHLLQS 1094
Cdd:COG5543    636 -------------GQEDDCGVPDQVILSVYWRNMKECSSLLCGMLLKYPLTR-----------GNLALSGRLVQVLLSHI 691
                          730
                   ....*....|...
gi 1958782841 1095 RHRGAFELAYTGF 1107
Cdd:COG5543    692 RHLGAFLQVSPYL 704
 
Name Accession Description Interval E-value
DUF2428 pfam10350
THADA/TRM732, DUF2428; This conserved domain is found in Thyroid adenoma-associated proteins ...
938-1114 1.35e-29

THADA/TRM732, DUF2428; This conserved domain is found in Thyroid adenoma-associated proteins (THADA) and the yeast homolog, TRM732. Trm732 forms a complex with the methyltransferase Trm7 to 2'- O-methylate tRNA residue 32 (Nm32), being required for Trm7 methylation activity. In humans, mutations of the Trm7 homolog FTSJ1, which interacts with THADA, impair Nm32 modifications, associated with non-syndromic X-linked intellectual disability. It has been suggested that these proteins may play a role in additional biological processes not related to translation. This domain contains a RRSAGLP conserved motif that is required for tRNA modification activity (Funk HM et.al., Preprint from bioRxiv, 03 Jun 2021 DOI: 10.1101/2021.06.03.446962).


Pssm-ID: 463054 [Multi-domain]  Cd Length: 260  Bit Score: 119.00  E-value: 1.35e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  938 PVLGKLLLLSYRLSTVVSPVIQSSSPEGLIPMDTDSESASrlqvilneiqprdtndyfsqakilkecdsfdledlstsvs 1017
Cdd:pfam10350    1 SLLERLLLLCERIWSIVLPVLCDDSPEGHLPEDLDDMDDD---------------------------------------- 40
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841 1018 nidssaEIKGKEEKACDVTAQMVLTCCWRSMKEVALLLGTLCQLLPLQPVPESAAGLLTVQQVKEIGEYFKQHLLQSRHR 1097
Cdd:pfam10350   41 ------STIDESEETEGLTHQILLSCSWRALKESSLLLGTIVKRVPLTTSPSNGDQLLTVEQLERIGELFFTQLLELRHR 114
                          170
                   ....*....|....*..
gi 1958782841 1098 GAFELAYTGFVKLTEIL 1114
Cdd:pfam10350  115 GAFETVYVGFTALCRRL 131
COG5543 COG5543
Uncharacterized conserved protein [Function unknown];
394-1107 2.08e-06

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 227830 [Multi-domain]  Cd Length: 1400  Bit Score: 52.31  E-value: 2.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  394 EYVYTHWEHPLDALRHQTKIIFRNLLQMHRLTIEGADLvtDPFFLELTKSLLQLEWHIKGKYACLGYLVESLGIEHILAI 473
Cdd:COG5543    108 EEVRDFGHLGRYKEEEAKTDFFSKLLELQLGRCPKEAV--KDVLFNWMNHLLLLLSGADVASQLIIFLMFYKLAVKYKVY 185
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  474 DKTIPSQILEVMGDQSLVPYASDLLETMFKN-HKSHLKSQT-VTNTWMDKWHETwvfpvlsVLCGGNLDQRSYVIDYYL- 550
Cdd:COG5543    186 DPRFLHKSKTLLHLIHLARAVLKTIIAYLLNrVDLVFNEFEgEEVMWMNLWCPK-------DLKYIHDKQPADPDSIRAv 258
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  551 PRLLNYSPE-SLHYMVQILQtpidtetgscNHRGALGALMACLRTARAHGHLqsathawENLVCS---ARVKQGLIHQHC 626
Cdd:COG5543    259 KRLFSSMPKaSFRYSLRILK----------NKDERFFVYLPDLKISTGYSIL-------RELLGKlspDRVRSIIKIVGD 321
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  627 QVRIDTLGLLCESSRSTEVVSREEMQWVQFFLTYNLNSQSPGVRQQICSLLTKLFCRIQESsqvLYKLEQRNSTPDSEKR 706
Cdd:COG5543    322 EYKLQSFARLFLPLKMSDPQRFFTFRSVEVRIESLFHIDGVGLRRRFLESMQHFFIRSRSM---LKSLARYFRKFPDEQL 398
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  707 STREQpsvsLQQYKNFMSSVCNILFEALFPGSSYSTRFSALTILGSIAEVFPASKGNIQTVYQLSHD--------IDAGR 778
Cdd:COG5543    399 WLKEK----VEEAHKFLTMYLEVIKPMLRPTNAYQRVLGSLYLMDSLIAEGIDKSTPQKFLIQNKREfpfsaqllFDSDH 474
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  779 FQILMECFTSTFEEVKTLAFDLLMNLSSvtAGQLQGSEKLQDLFQAALELSTSTKPYDC---VTASYLLNLLIwqdalpa 855
Cdd:COG5543    475 ERLMIDLLVSNYADIRKLSTKILLGLES--MSESRGLFLDTLDANALKVKIESHQSHDVhgdAGATVYCVEFI------- 545
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  856 slsASSAQQPTCGageksavverNTLVVIKCLMENLE-DEISQAENSLlqaassFPMYGRVHCITRAFQKLPLHDlrlvS 934
Cdd:COG5543    546 ---KSCQSRSFVG----------HTKSILDSHMKNFVsGKKSMEEISI------GPHFAALSLILGLFNSEENHQ----D 602
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  935 EWKpVLGKLLLLSYRLSTVVSPVIQSSSPEGLIPmdtdsesasrlqvilneiqprdtndyfsqakilkecdsfdledlst 1014
Cdd:COG5543    603 TSK-ILSELIEHDIITWVDIVYVCCFDSLSGVLP---------------------------------------------- 635
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841 1015 svsnidssaeikgKEEKACDVTAQMVLTCCWRSMKEVALLLGTLCQLLPLQPvpesaaglltvQQVKEIGEYFKQHLLQS 1094
Cdd:COG5543    636 -------------GQEDDCGVPDQVILSVYWRNMKECSSLLCGMLLKYPLTR-----------GNLALSGRLVQVLLSHI 691
                          730
                   ....*....|...
gi 1958782841 1095 RHRGAFELAYTGF 1107
Cdd:COG5543    692 RHLGAFLQVSPYL 704
 
Name Accession Description Interval E-value
DUF2428 pfam10350
THADA/TRM732, DUF2428; This conserved domain is found in Thyroid adenoma-associated proteins ...
938-1114 1.35e-29

THADA/TRM732, DUF2428; This conserved domain is found in Thyroid adenoma-associated proteins (THADA) and the yeast homolog, TRM732. Trm732 forms a complex with the methyltransferase Trm7 to 2'- O-methylate tRNA residue 32 (Nm32), being required for Trm7 methylation activity. In humans, mutations of the Trm7 homolog FTSJ1, which interacts with THADA, impair Nm32 modifications, associated with non-syndromic X-linked intellectual disability. It has been suggested that these proteins may play a role in additional biological processes not related to translation. This domain contains a RRSAGLP conserved motif that is required for tRNA modification activity (Funk HM et.al., Preprint from bioRxiv, 03 Jun 2021 DOI: 10.1101/2021.06.03.446962).


Pssm-ID: 463054 [Multi-domain]  Cd Length: 260  Bit Score: 119.00  E-value: 1.35e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  938 PVLGKLLLLSYRLSTVVSPVIQSSSPEGLIPMDTDSESASrlqvilneiqprdtndyfsqakilkecdsfdledlstsvs 1017
Cdd:pfam10350    1 SLLERLLLLCERIWSIVLPVLCDDSPEGHLPEDLDDMDDD---------------------------------------- 40
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841 1018 nidssaEIKGKEEKACDVTAQMVLTCCWRSMKEVALLLGTLCQLLPLQPVPESAAGLLTVQQVKEIGEYFKQHLLQSRHR 1097
Cdd:pfam10350   41 ------STIDESEETEGLTHQILLSCSWRALKESSLLLGTIVKRVPLTTSPSNGDQLLTVEQLERIGELFFTQLLELRHR 114
                          170
                   ....*....|....*..
gi 1958782841 1098 GAFELAYTGFVKLTEIL 1114
Cdd:pfam10350  115 GAFETVYVGFTALCRRL 131
COG5543 COG5543
Uncharacterized conserved protein [Function unknown];
394-1107 2.08e-06

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 227830 [Multi-domain]  Cd Length: 1400  Bit Score: 52.31  E-value: 2.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  394 EYVYTHWEHPLDALRHQTKIIFRNLLQMHRLTIEGADLvtDPFFLELTKSLLQLEWHIKGKYACLGYLVESLGIEHILAI 473
Cdd:COG5543    108 EEVRDFGHLGRYKEEEAKTDFFSKLLELQLGRCPKEAV--KDVLFNWMNHLLLLLSGADVASQLIIFLMFYKLAVKYKVY 185
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  474 DKTIPSQILEVMGDQSLVPYASDLLETMFKN-HKSHLKSQT-VTNTWMDKWHETwvfpvlsVLCGGNLDQRSYVIDYYL- 550
Cdd:COG5543    186 DPRFLHKSKTLLHLIHLARAVLKTIIAYLLNrVDLVFNEFEgEEVMWMNLWCPK-------DLKYIHDKQPADPDSIRAv 258
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  551 PRLLNYSPE-SLHYMVQILQtpidtetgscNHRGALGALMACLRTARAHGHLqsathawENLVCS---ARVKQGLIHQHC 626
Cdd:COG5543    259 KRLFSSMPKaSFRYSLRILK----------NKDERFFVYLPDLKISTGYSIL-------RELLGKlspDRVRSIIKIVGD 321
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  627 QVRIDTLGLLCESSRSTEVVSREEMQWVQFFLTYNLNSQSPGVRQQICSLLTKLFCRIQESsqvLYKLEQRNSTPDSEKR 706
Cdd:COG5543    322 EYKLQSFARLFLPLKMSDPQRFFTFRSVEVRIESLFHIDGVGLRRRFLESMQHFFIRSRSM---LKSLARYFRKFPDEQL 398
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  707 STREQpsvsLQQYKNFMSSVCNILFEALFPGSSYSTRFSALTILGSIAEVFPASKGNIQTVYQLSHD--------IDAGR 778
Cdd:COG5543    399 WLKEK----VEEAHKFLTMYLEVIKPMLRPTNAYQRVLGSLYLMDSLIAEGIDKSTPQKFLIQNKREfpfsaqllFDSDH 474
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  779 FQILMECFTSTFEEVKTLAFDLLMNLSSvtAGQLQGSEKLQDLFQAALELSTSTKPYDC---VTASYLLNLLIwqdalpa 855
Cdd:COG5543    475 ERLMIDLLVSNYADIRKLSTKILLGLES--MSESRGLFLDTLDANALKVKIESHQSHDVhgdAGATVYCVEFI------- 545
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  856 slsASSAQQPTCGageksavverNTLVVIKCLMENLE-DEISQAENSLlqaassFPMYGRVHCITRAFQKLPLHDlrlvS 934
Cdd:COG5543    546 ---KSCQSRSFVG----------HTKSILDSHMKNFVsGKKSMEEISI------GPHFAALSLILGLFNSEENHQ----D 602
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841  935 EWKpVLGKLLLLSYRLSTVVSPVIQSSSPEGLIPmdtdsesasrlqvilneiqprdtndyfsqakilkecdsfdledlst 1014
Cdd:COG5543    603 TSK-ILSELIEHDIITWVDIVYVCCFDSLSGVLP---------------------------------------------- 635
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782841 1015 svsnidssaeikgKEEKACDVTAQMVLTCCWRSMKEVALLLGTLCQLLPLQPvpesaaglltvQQVKEIGEYFKQHLLQS 1094
Cdd:COG5543    636 -------------GQEDDCGVPDQVILSVYWRNMKECSSLLCGMLLKYPLTR-----------GNLALSGRLVQVLLSHI 691
                          730
                   ....*....|...
gi 1958782841 1095 RHRGAFELAYTGF 1107
Cdd:COG5543    692 RHLGAFLQVSPYL 704
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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