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Conserved domains on  [gi|1955829675|ref|XP_038903862|]
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uncharacterized protein LOC120090344 isoform X1 [Benincasa hispida]

Protein Classification

TFIIS N-terminal domain-containing protein( domain architecture ID 10916803)

TFIIS (transcription elongation factor S-II) N-terminal domain-containing protein contains structural motifs that are responsible for interacting with RNA polymerase II (RNAPII) and mediating its catalytic activities

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BAH super family cl02608
BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). ...
 35-164 2.65e-61

BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.


The actual alignment was detected with superfamily member cd04713:

Pssm-ID: 470629  Cd Length: 146  Bit Score: 206.16  E-value: 2.65e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   35 FLKDGRKIHVGDCALFKPPLDSPPFIGIIRSLKSDKETNLRLDVNWLYRPADVKLPKGLSLDAA-PNEIFYSFHKDEIPA 113
Cdd:cd04713     14 FEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEdPRELFYSFHRDEVPA 93

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1955829675  114 ASLLHPCKVAFLRKGV--ELPSSISSFVCRRVYDTDNKCLWWLTDRDYINERQ 164
Cdd:cd04713     94 ESVLHPCKVAFVPKGKqiPLRKGHSGFIVRRVYDNVNKKLWKLTDQDYEDERQ 146
TFS2N smart00509
Domain in the N-terminus of transcription elongation factor S-II (and elsewhere);
327-406 4.40e-19

Domain in the N-terminus of transcription elongation factor S-II (and elsewhere);


:

Pssm-ID: 197766 [Multi-domain]  Cd Length: 75  Bit Score: 82.74  E-value: 4.40e-19
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   327 LQEVHKGKicdgNGMKGSDKTVEdFLLALLRALDKLPVNLNALQTCNVGKSVNHLRTHKNSEIQKKARSLVDTWKKRVEA 406
Cdd:smart00509    1 LLRAAKKL----DKVANNGKEVS-RCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWKKLVYS 75
 
Name Accession Description Interval E-value
BAH_plant_3 cd04713
BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH ...
 35-164 2.65e-61

BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.


Pssm-ID: 240064  Cd Length: 146  Bit Score: 206.16  E-value: 2.65e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   35 FLKDGRKIHVGDCALFKPPLDSPPFIGIIRSLKSDKETNLRLDVNWLYRPADVKLPKGLSLDAA-PNEIFYSFHKDEIPA 113
Cdd:cd04713     14 FEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEdPRELFYSFHRDEVPA 93

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1955829675  114 ASLLHPCKVAFLRKGV--ELPSSISSFVCRRVYDTDNKCLWWLTDRDYINERQ 164
Cdd:cd04713     94 ESVLHPCKVAFVPKGKqiPLRKGHSGFIVRRVYDNVNKKLWKLTDQDYEDERQ 146
BAH smart00439
Bromo adjacent homology domain;
41-155 8.40e-20

Bromo adjacent homology domain;


Pssm-ID: 214664 [Multi-domain]  Cd Length: 121  Bit Score: 86.58  E-value: 8.40e-20
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675    41 KIHVGDCALFKPP-LDSPPFIGIIRSLKSDKETNL--RLDVNWLYRPADVKLPKGLSLDaaPNEIFYSFHKDEIPAASLL 117
Cdd:smart00439    1 TISVGDFVLVEPDdADEPYYIGRIEEIFETKKNSEskMVRVRWFYRPEETVLEKAALFD--KNEVFLSDEYDTVPLSDII 78

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|...
gi 1955829675   118 HPCKVAFLRKGVELP-----SSISSFVCRRVYDTDNKCLWWLT 155
Cdd:smart00439   79 GKCNVLYKSDYPGLRpegsiGEPDVFFCESAYDPEKGSFKKLP 121
TFS2N smart00509
Domain in the N-terminus of transcription elongation factor S-II (and elsewhere);
327-406 4.40e-19

Domain in the N-terminus of transcription elongation factor S-II (and elsewhere);


Pssm-ID: 197766 [Multi-domain]  Cd Length: 75  Bit Score: 82.74  E-value: 4.40e-19
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   327 LQEVHKGKicdgNGMKGSDKTVEdFLLALLRALDKLPVNLNALQTCNVGKSVNHLRTHKNSEIQKKARSLVDTWKKRVEA 406
Cdd:smart00509    1 LLRAAKKL----DKVANNGKEVS-RCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWKKLVYS 75
TFIIS_I cd00183
N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a ...
 329-405 1.84e-17

N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme


Pssm-ID: 238107  Cd Length: 76  Bit Score: 78.50  E-value: 1.84e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955829675  329 EVHKGKICDGngMKGSD-KTVEDFLLALLRALDKLPVNLNALQTCNVGKSVNHLRTHKNSEIQKKARSLVDTWKKRVE 405
Cdd:cd00183      1 SEEVLRAKKK--LEKKDsNEEVSRLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWKKLVD 76
Med26 pfam08711
TFIIS helical bundle-like domain; Mediator is a large complex of up to 33 proteins that is ...
 354-404 2.72e-14

TFIIS helical bundle-like domain; Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably, the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small, active complex, whereas cdk8, cyclin C, Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5.


Pssm-ID: 462573 [Multi-domain]  Cd Length: 52  Bit Score: 68.31  E-value: 2.72e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1955829675  354 ALLRALDKLPVNLNALQTCNVGKSVNHLRTHK-NSEIQKKARSLVDTWKKRV 404
Cdd:pfam08711    1 KLLKKLEKLPVTLELLKSTGIGKVVNKLRKHKeNPEIKKLAKELVKKWKRLV 52
BAH pfam01426
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been ...
 41-149 5.90e-14

BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.


Pssm-ID: 460207  Cd Length: 120  Bit Score: 70.03  E-value: 5.90e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   41 KIHVGDCALFKPP-LDSPPFIGIIRSLK-SDKETNLRLDVNWLYRPADVklPKGLSLDAAPNEIFYSFHKDEIPAASLLH 118
Cdd:pfam01426    2 TYSVGDFVLVEPDdADEPYYVARIEELFeDTKNGKKMVRVQWFYRPEET--VHRAGKAFNKDELFLSDEEDDVPLSAIIG 79

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1955829675  119 PCKVAFLRKGVELPSSIS----SFVCRRVYDTDNK 149
Cdd:pfam01426   80 KCSVLHKSDLESLDPYKIkepdDFFCELLYDPKTK 114
TFSII TIGR01385
transcription elongation factor S-II; This model represents eukaryotic transcription ...
 353-429 5.83e-08

transcription elongation factor S-II; This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.


Pssm-ID: 273592 [Multi-domain]  Cd Length: 299  Bit Score: 56.39  E-value: 5.83e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675  353 LALLRALDKLPVNLNALQTCNVGKSVNHLRTHKNSEIQKKARSLVDTWKKRVEAEMDVNDA---KSESSRGVSWPSKSGP 429
Cdd:TIGR01385   24 LDILHQLKEFPPTEELLQETKVGVKVNKLRKHPNEDISKLAKKIIKSWKKVVDKNKSDHPGgnpEDKTTVGESVNSVKQE 103
 
Name Accession Description Interval E-value
BAH_plant_3 cd04713
BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH ...
 35-164 2.65e-61

BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.


Pssm-ID: 240064  Cd Length: 146  Bit Score: 206.16  E-value: 2.65e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   35 FLKDGRKIHVGDCALFKPPLDSPPFIGIIRSLKSDKETNLRLDVNWLYRPADVKLPKGLSLDAA-PNEIFYSFHKDEIPA 113
Cdd:cd04713     14 FEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEdPRELFYSFHRDEVPA 93

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1955829675  114 ASLLHPCKVAFLRKGV--ELPSSISSFVCRRVYDTDNKCLWWLTDRDYINERQ 164
Cdd:cd04713     94 ESVLHPCKVAFVPKGKqiPLRKGHSGFIVRRVYDNVNKKLWKLTDQDYEDERQ 146
BAH cd04370
BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). ...
 39-149 2.75e-20

BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.


Pssm-ID: 239835 [Multi-domain]  Cd Length: 123  Bit Score: 88.22  E-value: 2.75e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   39 GRKIHVGDCALFKP---PLDSPPFIGIIRSLKSDKETNLRLDVNWLYRPADVklPKGLSLDAAPNEIFYSFHKDEIPAAS 115
Cdd:cd04370      1 GITYEVGDSVYVEPddsIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEET--PKGLSPFALRRELFLSDHLDEIPVES 78

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1955829675  116 LLHPCKVAFLRKGVELPSSISS-----FVCRRVYDTDNK 149
Cdd:cd04370     79 IIGKCKVLFVSEFEGLKQRPNKidtddFFCRLAYDPTTK 117
BAH smart00439
Bromo adjacent homology domain;
41-155 8.40e-20

Bromo adjacent homology domain;


Pssm-ID: 214664 [Multi-domain]  Cd Length: 121  Bit Score: 86.58  E-value: 8.40e-20
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675    41 KIHVGDCALFKPP-LDSPPFIGIIRSLKSDKETNL--RLDVNWLYRPADVKLPKGLSLDaaPNEIFYSFHKDEIPAASLL 117
Cdd:smart00439    1 TISVGDFVLVEPDdADEPYYIGRIEEIFETKKNSEskMVRVRWFYRPEETVLEKAALFD--KNEVFLSDEYDTVPLSDII 78

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|...
gi 1955829675   118 HPCKVAFLRKGVELP-----SSISSFVCRRVYDTDNKCLWWLT 155
Cdd:smart00439   79 GKCNVLYKSDYPGLRpegsiGEPDVFFCESAYDPEKGSFKKLP 121
TFS2N smart00509
Domain in the N-terminus of transcription elongation factor S-II (and elsewhere);
327-406 4.40e-19

Domain in the N-terminus of transcription elongation factor S-II (and elsewhere);


Pssm-ID: 197766 [Multi-domain]  Cd Length: 75  Bit Score: 82.74  E-value: 4.40e-19
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   327 LQEVHKGKicdgNGMKGSDKTVEdFLLALLRALDKLPVNLNALQTCNVGKSVNHLRTHKNSEIQKKARSLVDTWKKRVEA 406
Cdd:smart00509    1 LLRAAKKL----DKVANNGKEVS-RCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWKKLVYS 75
TFIIS_I cd00183
N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a ...
 329-405 1.84e-17

N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme


Pssm-ID: 238107  Cd Length: 76  Bit Score: 78.50  E-value: 1.84e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955829675  329 EVHKGKICDGngMKGSD-KTVEDFLLALLRALDKLPVNLNALQTCNVGKSVNHLRTHKNSEIQKKARSLVDTWKKRVE 405
Cdd:cd00183      1 SEEVLRAKKK--LEKKDsNEEVSRLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWKKLVD 76
Med26 pfam08711
TFIIS helical bundle-like domain; Mediator is a large complex of up to 33 proteins that is ...
 354-404 2.72e-14

TFIIS helical bundle-like domain; Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably, the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small, active complex, whereas cdk8, cyclin C, Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5.


Pssm-ID: 462573 [Multi-domain]  Cd Length: 52  Bit Score: 68.31  E-value: 2.72e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1955829675  354 ALLRALDKLPVNLNALQTCNVGKSVNHLRTHK-NSEIQKKARSLVDTWKKRV 404
Cdd:pfam08711    1 KLLKKLEKLPVTLELLKSTGIGKVVNKLRKHKeNPEIKKLAKELVKKWKRLV 52
BAH pfam01426
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been ...
 41-149 5.90e-14

BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.


Pssm-ID: 460207  Cd Length: 120  Bit Score: 70.03  E-value: 5.90e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   41 KIHVGDCALFKPP-LDSPPFIGIIRSLK-SDKETNLRLDVNWLYRPADVklPKGLSLDAAPNEIFYSFHKDEIPAASLLH 118
Cdd:pfam01426    2 TYSVGDFVLVEPDdADEPYYVARIEELFeDTKNGKKMVRVQWFYRPEET--VHRAGKAFNKDELFLSDEEDDVPLSAIIG 79

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1955829675  119 PCKVAFLRKGVELPSSIS----SFVCRRVYDTDNK 149
Cdd:pfam01426   80 KCSVLHKSDLESLDPYKIkepdDFFCELLYDPKTK 114
BAH_BAHCC1 cd04714
BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. ...
 42-122 7.79e-13

BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.


Pssm-ID: 240065  Cd Length: 121  Bit Score: 66.66  E-value: 7.79e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   42 IHVGDCALFK-PPLDSPPFIGIIRSLKSDKETNLRLDVNWLYRPADVKLpkGLSLDAAPNEIFYSFHKDEIPAASLLHPC 120
Cdd:cd04714      4 IRVGDCVLFKsPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKG--GRKPNHGEKELFASDHQDENSVQTIEHKC 81


                   ..
gi 1955829675  121 KV 122
Cdd:cd04714     82 YV 83
TFSII TIGR01385
transcription elongation factor S-II; This model represents eukaryotic transcription ...
 353-429 5.83e-08

transcription elongation factor S-II; This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.


Pssm-ID: 273592 [Multi-domain]  Cd Length: 299  Bit Score: 56.39  E-value: 5.83e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675  353 LALLRALDKLPVNLNALQTCNVGKSVNHLRTHKNSEIQKKARSLVDTWKKRVEAEMDVNDA---KSESSRGVSWPSKSGP 429
Cdd:TIGR01385   24 LDILHQLKEFPPTEELLQETKVGVKVNKLRKHPNEDISKLAKKIIKSWKKVVDKNKSDHPGgnpEDKTTVGESVNSVKQE 103
BAH_Orc1p_Yeast cd04720
BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the ...
 37-147 1.78e-06

BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.


Pssm-ID: 240071  Cd Length: 179  Bit Score: 50.11  E-value: 1.78e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955829675   37 KDGRKIHVGDCALFKPPLDSPPFIGIIRSLKSDKETN-LRLDVNWLYRPADVK--------LPKGLSLdAAPNEIFYSFH 107
Cdd:cd04720     48 SDGLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNeVELWVMWFLRWFEINparyykqfDPEFRSE-SNKNELYLTAE 126

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1955829675  108 KDEIPAASLLHPCKV----AFLRKGVELPSSISSFVCRRVYDTD 147
Cdd:cd04720    127 LSEIKLKDIIDKANVlsesEFNDLSTDDKNGERTFFCRYACEPD 170
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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