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Conserved domains on  [gi|1955862585|ref|XP_038889233|]
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uncharacterized protein LOC120079123 [Benincasa hispida]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CcmH_N super family cl01179
N-terminal domain of cytochrome c-type biogenesis protein CcmH and related proteins; ...
 246-281 6.46e-03

N-terminal domain of cytochrome c-type biogenesis protein CcmH and related proteins; Cytochrome c-type biogenesis protein CcmH is a membrane-anchored thiol-oxidoreductase that is essential in the maturation of c-type cytochromes. CcmH consists of an N-terminal catalytic domain with the active site CXXC motif and a C-terminal domain of unknown function which is predicted to contain TPR-like repeats. Other members of this family include NrfF, CycL, and Ccl2.


The actual alignment was detected with superfamily member COG3088:

Pssm-ID: 470107  Cd Length: 149  Bit Score: 36.71  E-value: 6.46e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1955862585 246 SEEEVRDYFGRRYGDFIenihmqEAQPPEQPLYALL 281
Cdd:COG3088    75 SDEEIVDYMVARYGEFV------LYKPPLKGATLLL 104
 
Name Accession Description Interval E-value
NrfF COG3088
Cytochrome c-type biogenesis protein CcmH/NrfF [Energy production and conversion, ...
 246-281 6.46e-03

Cytochrome c-type biogenesis protein CcmH/NrfF [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442322  Cd Length: 149  Bit Score: 36.71  E-value: 6.46e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1955862585 246 SEEEVRDYFGRRYGDFIenihmqEAQPPEQPLYALL 281
Cdd:COG3088    75 SDEEIVDYMVARYGEFV------LYKPPLKGATLLL 104
 
Name Accession Description Interval E-value
NrfF COG3088
Cytochrome c-type biogenesis protein CcmH/NrfF [Energy production and conversion, ...
 246-281 6.46e-03

Cytochrome c-type biogenesis protein CcmH/NrfF [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442322  Cd Length: 149  Bit Score: 36.71  E-value: 6.46e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1955862585 246 SEEEVRDYFGRRYGDFIenihmqEAQPPEQPLYALL 281
Cdd:COG3088    75 SDEEIVDYMVARYGEFV------LYKPPLKGATLLL 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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